Array 1 801042-799813 **** Predicted by CRISPRDetect 2.4 *** >NC_012912.1 Dickeya chrysanthemi Ech1591, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 801041 28 100.0 32 ............................ CGTCATACTTGATAGGATGACCGGTCGCGAGA 800981 28 100.0 32 ............................ GTGACGAGGTGGACAATCTAATCGCTGCAGCT 800921 28 100.0 32 ............................ AGCAATGCCAGGCTTTGACCGTGACGAGGTGG 800861 28 100.0 32 ............................ GCAGAACCCAACAGAAACTGAAGGAGTCCGAC 800801 28 100.0 33 ............................ CAGGGGTGAGTTGGCAACACCTGAGAGCCTGGC 800740 28 100.0 32 ............................ TAAACAAAACCCCTTAACCGGGGTTTTTTATT 800680 28 100.0 32 ............................ ACAGCTCCAGCGCGACCCGACGGCGGATGTGG 800620 28 100.0 32 ............................ TTCGCTCTGGGTAGCGCGATCAAGGCGGTCAA 800560 28 100.0 31 ............................ TGAGCAACGGCGTTTCGTTGACGAACTGCTC 800501 28 100.0 32 ............................ TGTCCGGCGCTCGCGGTATGAACGAGGATTTT 800441 28 100.0 32 ............................ ATAGCGGCGGCACTGGGGCTTACACTGAGACA 800381 28 100.0 32 ............................ CACCAGCTCGGCGTCGTTGCTGGTTTTTAGCT 800321 28 100.0 32 ............................ GAATGCAACTGGCACGAGGCGCATGGGAAGAG 800261 28 100.0 32 ............................ ACGAAGGCGCATGAGAAACTGCCCATCTGGTC 800201 28 100.0 32 ............................ CGTTGGCGCCAGCGGCCTGGCACAGTTTATGC 800141 28 100.0 32 ............................ GGGATGCAACATGCCCGCTCCAGCGCGTCACC 800081 28 100.0 32 ............................ AGAAGCTGGCAAAAGTGCTGACCCCCACCCGG 800021 28 100.0 32 ............................ ATTCCATCTCTTCCGGCTCTATGAACCGGGCT 799961 28 100.0 32 ............................ ATACGTCGTTGAAATAGTACAGCGCGATAGCG 799901 28 100.0 32 ............................ AATCTATTTCTGATAATAGTAGTTATCGGAAA 799841 27 82.1 0 ...........C.C.........-..CG | GG [799818] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGTCCGCCATTGACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGGAATAAGACGCAGGCTAATAATTGATTGGAAAACACGTAATGCACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCAGGAAAGTGAATGACGCCCAAAATACTTTTCTTATTTTTATACCCTTTTTTCCGCCGCTATTTTCGATACTTAAAAATCAATCAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGACAATTGCAGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : AGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGTGTGGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCGCGTCACAGGCGGTCCGAGCAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATAAAGCCGCTAAGAGACGATGCGGTTAATCACGCACGAAACCCTCATTCTACCGATAATCCTCACTATCTAACGCCCGGGAAAGGGCAACCTGTCAGAACGACGTCCAGTCGCTATTGCTGCCGATGGCAGCGGCCCGTCTTTCAGTCACGGCCGGGCGAACCGGCAGCGCCGGAGATAGCACCGCTGACTGACGGGCTGGCGACGTTGCGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 810332-812878 **** Predicted by CRISPRDetect 2.4 *** >NC_012912.1 Dickeya chrysanthemi Ech1591, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 810332 28 100.0 32 ............................ GCCTCAACATCACACTGGAGCCACGCAAGGCC 810392 28 100.0 32 ............................ ACGGTCATTGATGACAAGTCATAAGCTTTTTC 810452 28 100.0 32 ............................ TGTCAACAAATCTTTTTTGAGTAAATCAGAGC 810512 28 100.0 32 ............................ AAAGGTACCCACACGAATTTTGGCATCAAGAA 810572 28 100.0 32 ............................ TTAGACGCCGCGCTGAAGCTACTGGAAGCGCT 810632 28 100.0 32 ............................ CGTCAGACGAAGGCGCTGGCCGATTTGGAGCA 810692 28 100.0 32 ............................ TTTGTTGGCAGGCTTTCTATCTGCTTATGCCT 810752 28 100.0 32 ............................ GTAACGGATGCGGATGTGGTTCGTGTTCGTGT 810812 28 100.0 32 ............................ CGACTCCGTTCGCATCCGCAACAATTTTCAGA 810872 28 100.0 32 ............................ ATTGCCGCACGTGGAGATGCCACCACGCCTTT 810932 28 100.0 32 ............................ CTGAAAATGCCAAAGCATAGAGATGCCCCTTT 810992 28 100.0 32 ............................ CGTCGATCCCGTTAGCTTCCAGCGTCGCGCAC 811052 28 100.0 32 ............................ TACCAGCGTAAGTTGGTCATCCTGCAAATCGC 811112 28 100.0 32 ............................ TGAAACCGACGAGAGTTGGGATGAAAAACGAT 811172 28 100.0 32 ............................ GCTAATCCCTGCTGTTGCGAGAATCATGTAAA 811232 28 100.0 32 ............................ TACAGCCTCAGCAATGCGCAGTTGTCCGGTAA 811292 28 100.0 32 ............................ AACTGATGAGTATCTCTTCTTCCCAGCTTCCC 811352 28 100.0 32 ............................ TGATTCTTGGCTTTCTTGTCGCCTTCGATCCA 811412 28 100.0 32 ............................ CGCTACCGTTTTTCTCATCCGAATACGAAACC 811472 28 100.0 32 ............................ GATTCTTGGCTTTCTTGTCGCCTTCGATCCAT 811532 28 100.0 32 ............................ GCCACGAGGCGGTTTTTTTGTGCCTGTAACTC 811592 28 100.0 32 ............................ AACATTCCGGGAATATCAGAAGATGCCTGCCC 811652 28 100.0 32 ............................ ATGATGTTCCGACAGCTGTCCCGTCATGTCTA 811712 28 100.0 32 ............................ ATTGATGATGTGCAGATGATGCACATAGCAAT 811772 28 100.0 32 ............................ TGCAGCGCATCGTTGAACGTTCTGTACAGCCC 811832 28 100.0 32 ............................ GGTAGCCAATTTGCGCAGAGTATCGTCGCGAT 811892 28 100.0 32 ............................ AGAGTGCGCCGCGTACTGGCTTGCTAGCGGTG 811952 28 100.0 32 ............................ TGTTTCGATTTTCGCAACGCTCCGGGCACGGT 812012 28 100.0 32 ............................ ATCATCGAGTTTCTTAATTGCCATAAGAACAC 812072 28 100.0 31 ............................ GAGTTAAGATTAATATCGTTTTAATAGCCTT 812131 28 100.0 32 ............................ AGCATAAATCCCATTTATATAGGATATGACAT 812191 28 100.0 32 ............................ AGGTGAATCATTTATTCGAAGCCAGGCTGAGA 812251 28 100.0 32 ............................ AAATGCGTTCATCCGGCACCGCTGGTGCTGGC 812311 28 100.0 32 ............................ GGCTTTAAAAACGGCGTTCTCAGCGCACTTGT 812371 28 100.0 32 ............................ AATACGTGATCAGCTTAAACTCAATATCACCT 812431 28 96.4 32 ...........A................ AAGGACGTCCGGCACCTACCGGGCTTTACGCC 812491 28 100.0 32 ............................ GAGGAGACGCGGGAATCAGAATTCATACTCAA 812551 28 100.0 32 ............................ GTAATGACGGTCTTCCAGCGTCACTTTGCCAT 812611 28 100.0 32 ............................ TCAGATTGCCGAGTACACCCGATCGCCGTTAT 812671 28 96.4 32 ......A..................... ATCCGTAACAAGGACTGGGAAGCCACTGTCGA 812731 28 100.0 32 ............................ TGGAATGATGTTGTGACCCCCGAATAGCGACC 812791 28 96.4 32 ...........A................ GTCATCAGCCGAAAAAACGCTTTTGCGTAGGC 812851 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 43 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGTTGGCTGACTGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTACCGCTGCGTAGCCTTTCCAGTGGACAACCGTTTTTACTGTTTGTCGAGCACGGCCCGCTACAGGATAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTCCGGAAAAACGGCGGTTTTTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACA # Right flank : AGGACAACTGACAAGTGCTAGTTGACTGTTGGAGTTCACTGCCGCACAGGCAGAGGTTTATGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGAACCACCGCTCTCTCATACATTCGACAAACGTATTTGTCAGCCATACCCCGGCTGTGTGTCAACAGCCCTATTCCTGCACAGGAATAAAAAAATCCCCCGGCCGTTGCCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAAGCGGCGGCGACGCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 819170-818059 **** Predicted by CRISPRDetect 2.4 *** >NC_012912.1 Dickeya chrysanthemi Ech1591, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 819169 28 100.0 32 ............................ CAAGTCTCGCGGCTACGCGCCGGGTTGGGCAC 819109 28 100.0 32 ............................ GCATTGAGTACCTCGCAGACGCGATGCGCAAC 819049 28 100.0 32 ............................ TGAACTCAGAACAAATGTTTGCAATCTCATCC 818989 28 100.0 32 ............................ GCTAACCACCACCGCCAAGCGCGGGGCAATTA 818929 28 100.0 32 ............................ TGCGTGGCATTGCCGTCTTTCAGATATTCTGC 818869 28 100.0 32 ............................ GCGAACCGGCAGATGTTGGCGGCTATGGCTAC 818809 28 100.0 32 ............................ ATGCGTGGCTATTGTCTGCGCGCTCTCGGCCA 818749 28 100.0 32 ............................ CTTGGGACAACCCCAACCTAGCCCGTTCTGAT 818689 28 100.0 32 ............................ GTTGGCATCGGTTCAGTGACCGGCTGGCCGTC 818629 28 100.0 32 ............................ GGCCCCATTTGACCAGAGATAAACGCCCGTGC 818569 28 100.0 32 ............................ TGCATTGCCCGTGAGTAGCGTTCGCGCCTGTC 818509 28 100.0 32 ............................ TGACAACAAATGGGGGCTGATGCAAGAGATAT 818449 28 100.0 32 ............................ ACTGACCCACACCCAGTTACCAATAACCTCGT 818389 28 100.0 32 ............................ GTTTCAAATCGAAACGGAGCTTGACCACAGGC 818329 28 100.0 33 ............................ TGGCCTATATTGGCTGCGCCGGGATGGACAGGG 818268 28 100.0 32 ............................ ACTATGACGCTGATAGCAAATGCCTTAAAAGC 818208 28 100.0 32 ............................ CTGCTGCTGGGCCTGCCGTGTGTAGTCGGCCT 818148 28 100.0 32 ............................ TGTGGACAACGGATGATGAACGCCCTTGCAGC 818088 28 75.0 0 ..T........C.C.........G.TGG | GG [818063] ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.7 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGGAAATCCGGCATCAGGGTTTTCCAACTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGAGCGGGCCATCGCGATGTCGATCCCTTCGTAATCGCTATCCGCACGCAGCGAGGTATACGGCTTGTAATCGCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGCACCTGGTCAAGATGAGACGCCGCGCCGGCACTGCCGGCCAGCCCCAATAACAACATCAGTGAAAATCGTTTTTTCATACACGTTCCTTGCACGCCTGTCTGGCAAAAGCGCCACTGTAGCACGCTGTTTCCGCCGATGCCGGTTTTGACCCTTTTTTTTCACTCCGTTATAACTCATTGATTTTTAATGACGATAAAGAACGGTTCAACAAAAGGGTTTCGCAGGGAAAAACGCTATTTTTCCTTTTCACATCAAGCCATAAGCGATAAATTGCTACG # Right flank : GGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCAAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGATACGCGATTGCCTATCCCGCACGAAACCGCTCACCGCCCCAACATAAATCAGGCCGCAGCAAAATCCTTGCTGTTTACCAACAGCCCGAAAACGCTATTCCGCCGCCAGTACCGACTGCGCCCCTTTGCGCTTTTTGATGGCATAACCCGCACCCAACGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGAATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1053306-1045897 **** Predicted by CRISPRDetect 2.4 *** >NC_012912.1 Dickeya chrysanthemi Ech1591, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1053305 28 100.0 33 ............................ CATATACTCAGCGCTGTTAGCGTTTCACATGCG 1053244 28 100.0 33 ............................ TCTTACGGCCTATCTCCGCATCGAAGTTTTCAG 1053183 28 100.0 33 ............................ CGAAACGCCGCTGCTCAGGAGTCAGCCTTTCCT 1053122 28 100.0 33 ............................ TTAGTCCGCGAAACGCGAGCGGAAAACGGGTTC 1053061 28 100.0 33 ............................ TAACCGGGCTTTGTGCATAGCATCTGGCGGCTC 1053000 28 100.0 33 ............................ CGCATCAGCCAGCCTTGACCCGCAAACCGGCGT 1052939 28 100.0 33 ............................ TGAAAATCTTCTGTGGGTTTTCGTTGGCCGCCA 1052878 28 100.0 33 ............................ TGTAAGCCGCGGTCAAATCGGTGTAGCTTTTGG 1052817 28 100.0 33 ............................ TTATACGACATCGGGGTTAGCCAAGCCGCGATC 1052756 28 100.0 33 ............................ TCAAGGGCAGAAGGTATCTAACCGCATCTGTGA 1052695 28 100.0 33 ............................ CGTTACGTTTGCGTTCAGCGCCTCGACGCTAAA 1052634 28 100.0 33 ............................ TTCGCATTGCTGGCGCTGAGCCTTCAGCGCTTT 1052573 28 100.0 33 ............................ TCCGATATCGATGAAACGCTGCGTCGCTGCTGG 1052512 28 100.0 33 ............................ TGTCCCGGACTTTTAAACATTTAGGGGCGCTTC 1052451 28 100.0 33 ............................ CATCACCCGATCGCCCGGTGTCACTGCGCGGAG 1052390 28 100.0 33 ............................ TGTCCACAATGCGACGGGGCTTTCGAGCCCGAC 1052329 28 100.0 33 ............................ CCTGAAAAGCTTGGAGTGGTGATCATGGCGGCC 1052268 28 100.0 33 ............................ CGAGAGTTGCGACAGCGCGATCGTCGATGCCGC 1052207 28 100.0 33 ............................ TACTAAATTTGCTTGCTCCTGCATAAGAGCTTG 1052146 28 100.0 33 ............................ CTTGTATTCCTGCCAGTCCTGCAATGGCAAATC 1052085 28 100.0 33 ............................ CATGGCTGTTTTACCCCCGCGCCGAGCAGCCTG 1052024 28 100.0 33 ............................ CGGCAAATCTTGCATTCGCGCCGCATGTAAGCG 1051963 28 100.0 33 ............................ CTGGTTCATTTGCATTCGCTATTCTCCAATTGT 1051902 28 100.0 34 ............................ GCGACGCGGTCGATGTGCTGGTGGAGCATCAGCG 1051840 28 100.0 33 ............................ TCGGACAAGCTAAGGAGCTGGCTGCGTTGTTTA 1051779 28 100.0 33 ............................ TGACATAATTTCGGTTCCTTTTCGGTTGGGCCG 1051718 28 100.0 33 ............................ CATTGAAGCCATTGAATCCGGCTTCTTTCCCTT 1051657 28 100.0 33 ............................ TACGTTCCGGCGTGTATGCGTCCCAAGCCGGAA 1051596 28 100.0 33 ............................ CAAAACTAATGCCCGCAAATGGCGTTCATATTG 1051535 28 100.0 33 ............................ CATTCTTCCAGCCCTTCAAGACCGTATCGACAA 1051474 28 100.0 33 ............................ TGATTCCAAATAGTCTTTAGCCTTGATGATTTG 1051413 28 100.0 33 ............................ CTCCTTCGAAGTTAAGAAAAAGGGCGGGAACTT 1051352 28 100.0 33 ............................ CAGTTCGCAGCGCCGAAGCTTGTTCTTGCTGAA 1051291 28 100.0 33 ............................ CAAAGCTTATTTTTTCGGCGAAAACCTGCGCGG 1051230 28 100.0 33 ............................ CGTTCGCTTCGGAAACGTAACCGAACAGCGCCG 1051169 28 100.0 33 ............................ TCCATTTGAATTGGCCGGGGTCAAGGCGAACAG 1051108 28 100.0 33 ............................ TTGCGTTGCTTCTTTGTGCGGTAAAGTCGGATA 1051047 28 100.0 33 ............................ CTATACGACTGCCCTTCGATGTTGTCAAGCGGT 1050986 28 100.0 33 ............................ CGCCAATCTTCGACGATTGCTTAAAAGCGATTG 1050925 28 100.0 33 ............................ TGTCGGTTCCAGCCGGAAGCGTCTTCGTCTTTG 1050864 28 100.0 33 ............................ CTTTAACGCCTTCGATATAAATTTGATGCCGCG 1050803 28 100.0 33 ............................ CCGAAGAACGTTTGCGTCGGCAGAAGGTCAAGC 1050742 28 100.0 33 ............................ TTGCCGAAGCGAACGAATTTTCTTTGCGAATGT 1050681 28 100.0 33 ............................ CATTCAGCAATTCCCGTTGTTGCTTGGCTGCGG 1050620 28 100.0 33 ............................ CGTTCAAAAGCTACAAACTTTCCGTTCGCCAGA 1050559 28 100.0 33 ............................ TCCGCCAAAGCTGCGGTCAGTTCCAACGCTTCT 1050498 28 100.0 33 ............................ TGAGCTGCAGTGTTAGTCCAGACCTTTTCCTGC 1050437 28 100.0 33 ............................ TGGAGGGACGTGGACAGCCTGGAGCAAGACGGC 1050376 28 100.0 33 ............................ CATTCAGGATATTTTCTATTTGCCCTGCGCTTT 1050315 28 100.0 33 ............................ TGCCTCAGTGATGTTTATCATCGCTTATGGTCA 1050254 28 100.0 33 ............................ TTTCTTCGAGCGAGACGGGGTAACGCGCAAAAC 1050193 28 100.0 33 ............................ CAGTAACGCGCCCGAAGCCCACAGGATAAAAAG 1050132 28 100.0 33 ............................ CTGATGGGCATCATGCACGACTCAACCCGCGAC 1050071 28 100.0 33 ............................ CCCGCTGTCTGCGCCACAAGCCTTGTTCGTGTC 1050010 28 100.0 33 ............................ TAGTAACGTGGATTACTAAGGCTACTGATAGCC 1049949 28 100.0 33 ............................ TGGTTAGATAGCGCCCTGTACATGGTCGATGTC 1049888 28 100.0 33 ............................ CGTTTGATTTACCCGTTGAGATGATCGGCGATT 1049827 28 100.0 33 ............................ CCCATCACTACACAGGCTCACCACGCGGTGACT 1049766 28 100.0 33 ............................ TCATCTACCTATTCGTGCGCCGGTAGCGGCTAC 1049705 28 100.0 33 ............................ TGTGAGCGGCACCGCTTCCGGTCGCCACGCGAT 1049644 28 100.0 33 ............................ CCCATCTCCGCCAAATGCACGCCTTACGGCATG 1049583 28 100.0 33 ............................ CTCAGCAAGCTGCTCCGCTGACGCCGGAAGAGA 1049522 28 100.0 33 ............................ TCTATTCCGACAAAGCTAGGCATGATGGAGCGC 1049461 28 100.0 33 ............................ CCTTTGGCGGCGCTGGCGGATCTGGATAAACTA 1049400 28 100.0 33 ............................ TGGACGCAACTACCGGACGCACTGAAGGCCCGA 1049339 28 100.0 33 ............................ CATTGATCGGATGACGAATCTCATGCTCTTACC 1049278 28 100.0 33 ............................ TCCCTCATTCATTTCACACAAGTGTTCAGCAGT 1049217 28 100.0 33 ............................ CAACACTTAGCAAGATCACCAACCACTTCCTGA 1049156 28 100.0 33 ............................ TCCGGGTCTACGGTGTGCGCAGAACCTTGGCTA 1049095 28 100.0 33 ............................ CTGGAGCTGTCCTCAGATGACATTCAGCAAGCG 1049034 28 100.0 33 ............................ CGCTTATCTACGGCTGTGATCGAACGGAGCCAA 1048973 28 100.0 33 ............................ TACGGTCTGGACTACCGTGACGGGCCAGAACGG 1048912 28 100.0 33 ............................ CGCGATAGCGACCGGTTCGGCATTCGTCAGCCT 1048851 28 100.0 33 ............................ TGCGCTTTGCCATCGTCGCTTATGAGTTCCAGG 1048790 28 100.0 33 ............................ TTAAAAGGGCTTTCGAAGAAACCGCAAAACGGC 1048729 28 100.0 33 ............................ TACTCCGCTCTACGCCGCCCCAATCATCACGGA 1048668 28 100.0 33 ............................ CAGGGGATTTACATGCAAACCATCACAAACAAA 1048607 28 100.0 33 ............................ TGAAGCTGTTTCTCCAGTGTGACTATTCTGTCG 1048546 28 100.0 33 ............................ CAGCAGGGTCGCGAACATCTGCGCGTAGCATCA 1048485 28 100.0 33 ............................ CCGCAAACCGGCCCCGCCGTGCAAGTCGTAATC 1048424 28 100.0 33 ............................ TCTGTCGTTGGGATATTTCAGGATGATTCATCG 1048363 28 100.0 33 ............................ TCAAAATTATCGCAGCATTTCTGTTTCACCCTA 1048302 28 100.0 33 ............................ TCATTGTGGCGACATCCAGCGTGTCAGATGCTG 1048241 28 100.0 33 ............................ TCCGTGCATTATTTGGTTTTTGGAATGGCAGTA 1048180 28 100.0 33 ............................ CGAGATTCAGCAAACTGCCGCTGCCAGACACAA 1048119 28 100.0 33 ............................ ACTGGTAGGCCTGCAGCAACTTTTGGTTATCCC 1048058 28 100.0 33 ............................ TTGTCCCCTGGCGTTGAGCCGGAACGGGCGGTG 1047997 28 100.0 33 ............................ CAGGCTGTCATACTCGATATCGTCCGGGTAACC 1047936 28 100.0 33 ............................ TAGGGATCGCCCCACCGATGAGTTACAGCAAGT 1047875 28 100.0 33 ............................ TGTTGTCATTACCGGCAGGGATGAGGATGAAGA 1047814 28 100.0 33 ............................ CACTTACGGCAAAAAGCAAAACCTACTCGCGCA 1047753 28 100.0 33 ............................ TCAAGATGCATCCGCTCTACATGATAAAGCAGA 1047692 28 100.0 33 ............................ TCCGTAGCGCAAAAGTGTCAGTACGTGGGTCTG 1047631 28 100.0 33 ............................ CGATTTGCACCAGTTAGAGGGCGCGGACGCTGT 1047570 28 100.0 33 ............................ CCCGGCGTTGCCATCTTGGCAAAGGTGCCAGAC 1047509 28 100.0 33 ............................ CGTTGCCCACTTTGCGAAAATTGGCGGTAGCTA 1047448 28 100.0 33 ............................ TATCAGCGACTGGAACCCAGCGCCCCCGAATGG 1047387 28 100.0 33 ............................ CCAGGCACCCATGCTCTGGACGTCATCAACGCT 1047326 28 100.0 33 ............................ TTTAGTAGGTGCTGTATTAGATAGGATTATTCC 1047265 28 100.0 33 ............................ CAATTGCAACGATTATTGTAACAGGGTCGGCGG 1047204 28 100.0 33 ............................ TTCACCGAGGAACGCCTGCACGTCTGCCGCTGT 1047143 28 100.0 33 ............................ CAAGAGCGCGGCAACCGGGTGGACTGGCAGCAC 1047082 28 96.4 32 ............T............... TACCTGCGAGTTACCGAGCGTGCCGGAGGGGG 1047022 28 100.0 33 ............................ TTTCTGGCGGTGGTATTGCAACCACAATCAGAG 1046961 28 96.4 33 ............T............... TTGAAAACCCGACCAGGACCCGGCGTCAGCCCC 1046900 28 100.0 33 ............................ CAAAGTTGCTGAGTTGATCAGGAGTTAATGTGA 1046839 28 100.0 33 ............................ TACAATCAGGGGCAGCATGGATGCTCAAAGGAG 1046778 28 100.0 33 ............................ TGCTTACGCTCAGCGACAGGTTACCGAGGCAGC 1046717 28 100.0 33 ............................ CAATTGCAACGATTATTGTAACAGGGTCGGCGG 1046656 28 100.0 33 ............................ TTCACCGAGGAACGCCTGCACGTCTGCCGCTGT 1046595 28 100.0 33 ............................ TGTTGTCATTACCGGCAGGGATGAGGATGAAGA 1046534 28 100.0 33 ............................ CACTTACGGCAAAAAGCAAAACCTACTCGCGCA 1046473 28 100.0 33 ............................ TCAAGATGCATCCGCTCTACATGATAAAGCAGA 1046412 28 100.0 33 ............................ TCCGTAGCGCAAAAGTGTCAGTACGTGGGTCTG 1046351 28 100.0 33 ............................ CGATTTGCACCAGTTAGAGGGCGCGGACGCTGT 1046290 28 100.0 33 ............................ CCCGGCGTTGCCATCTTGGCAAAGGTGCCAGAC 1046229 28 100.0 33 ............................ CGTTGCCCACTTTGCGAAAATTGGCGGTAGCTA 1046168 28 100.0 33 ............................ CACATACGGCAAAAAGCAAAACCTACTCGCGCA 1046107 28 100.0 33 ............................ TATCAGCGACTGGAACCCAGCGCCCCCGAATGG 1046046 28 100.0 33 ............................ CCAGGCACCCATGCTCTGGACGTCATCAACGCT 1045985 28 100.0 33 ............................ TTGTCTACCGCACGATTATCAAAACTGACCCGG 1045924 28 89.3 0 ............T...........C..G | ========== ====== ====== ====== ============================ ================================== ================== 122 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAGCCGCTGTGTATTGATCTGGCATTTTCTCTCTCACGAGAAATGGCTGGTCATTATGATAAATACAAAGTATCTGACGCATTCAGGAAGCGAGTTATTGCCATTGATTTGCTTAATCAAATCACCGCAGATGTTAATGAGTTGATGGGGGTTAAACATGCTCGTCGTACTCGCAAATGACCTACCACCTGCGGTTCGTGGGCGTATGAAACTTTGGTTCGTGGAGCCTCGCCCGAATGTGTTTGTCTCAGGTGTGAAAGACTCCGTGGCACAAACCGTGGTTGATTACTTGATGCAGTATTCACCAGCAGAGTCTGGTCTTATGCTGTTTCGAAGTATTCCACAACCGCCTGGTTACGAAATTCGTTACAAAGGCGAGATAAGAAAGCCAATTACTCATATCAGTGGATTGCAACTGATTATCGAAACCCTGAAATCCCTGTAACCCACAGATATAGTGTTTCAATTATCGCTCTTTCACAATATATTGGT # Right flank : TTTGCAACGGGGCCTGACGCCGCCGTCTCCCCCACTCTATTTGGGAGTACCACCAACTCATTTCATTCTGCCACCGCACTACGGTGGCATTTTTCGGGTATAGCTTGGCTTTAATCGCCGTTAATGTCTTTTCCCTGTCGTTGCGGCGTCATGCGCCGATAGCGCGACGGCCAGATTTCTTGCGGTGTTTTCTCTACTGCCTGCGCAATCAGTCTTTCCCCTTTCGGCCAATGCCGGGATAACGCATTCGCCAACGTTGACGAGGCCAGCCCATGCTGGCGCGATAGTGCCGCCAGCGTGGTGCCCCGTTTTCTTAATGCGGCAATGATATCTGCCGGATGCCAGTCACCTGTTTCCATTACTGCTCTCCTTTTGCCTGCAACCAAATATCCCATTTTGGGATATATCGAAACATGACAGATATTCGATTTTAGGATATTCGTCAAGAGCATCATGTTATGGCATCAACTTATTCAGCAGAGTACCAGCGCATTATCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //