Array 1 595-322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRMV01000121.1 Actinomyces sp. S6-Spd3 contig121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 594 29 96.6 32 ........................C.... TGGACAGCATCACCAGGATCAATAGATACAGG 533 29 100.0 32 ............................. TGGTACAACAAACAACACGCAGGCAAGGCAGC 472 29 96.6 32 ............................G TCCAAGAAGCATGGATCTTAGAACTCGGCGAG 411 29 100.0 32 ............................. TGCGAGATAGCTGTGGTGATTATGCTGGTTGC 350 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 ATGTTCCCCGCGCCTGCGGGGATGACCCC # Left flank : TACAACGCCGGGTCTTTCCGGTGCACAG # Right flank : CCGGCTAACCCCAAGCCAGCTCATAATCTACGGGCAACCAATCAGTCGCGATTACGCGAACACGCGCGTAACCTACTATGGCAACGAGCAAATCAACCGGCTAAGGAGAATCACAAATGACCCGCACTAACCCTAAGAACCCCCGCCGCCTCACCATCCAAGAAAAGTGGGCGTTAGACACCGGCGAGAAAGCAACCGGAGGAGGCAAGCAGTTCAAAGAGGCGCGTGAATACATTAAGCAATACGAGGCTAAAGAAGCGAAGCGAGAAAAACAAGCCAAGAAAGACAAGCGCACCAAGTAACAACACCAAACACAATCCCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCCTGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 167857-169302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRMV01000272.1 Actinomyces sp. S6-Spd3 contig277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 167857 36 100.0 28 .................................... GTGAAATGGTTTGCGCTTCGGGACGATA 167921 36 100.0 28 .................................... ATCGCTGTCAACATTAGGAGTGTTGAAA 167985 36 100.0 28 .................................... AGTCACAAACATGTATTTTGGGCACATG 168049 36 100.0 28 .................................... CGCGCCGACGCCTTGCATAGCCGCTGAG 168113 36 100.0 28 .................................... CTGATATGGAACAGTTGAACAGCCTTGT 168177 36 100.0 28 .................................... GGACGGAACGCACATCGTTTACACTCGC 168241 36 100.0 28 .................................... CCAGCGTCACGGTCTTGTTCTCGGTGGT 168305 36 100.0 28 .................................... CCGGCGAGTATAGCGAGTACAGCTGTGA 168369 36 100.0 28 .................................... CTGTCGAGCTTCCAGCGCCTGCCAGGCG 168433 36 100.0 29 .................................... TCCAGTAAGGACGATGCTGGGGACGTTAA 168498 36 100.0 28 .................................... AATGGTCTCGCGTTCGCGAGATGTTCCC 168562 36 100.0 28 .................................... ATCTCAGCCGTAGCCGGAAGAATCTTAA 168626 36 100.0 28 .................................... AATTAAGCTGCATATCGTCCTCAATATT 168690 36 100.0 28 .................................... AATCGTGACAGATTTGCGTGATCTTTCC 168754 36 100.0 28 .................................... TGATCCCGCCTGCATCCATATGGAATGA 168818 36 100.0 29 .................................... CCAAGTCCTCGGCGGACGGTATCGCTTCG 168883 36 100.0 28 .................................... CCGGCGGGATGAGTAGTCAGATCAGGTC 168947 36 100.0 28 .................................... ATGCGGGAACGCTGGTCTCGGTTAGTTT 169011 36 100.0 28 .................................... CCCATCCGAGAAGCGGTACGCCAGGATG 169075 36 100.0 28 .................................... TCGTAAAGCCCGGACAGCTCCCACATAA 169139 36 100.0 28 .................................... GAAGATCACCATGTCCCCCAAGCTGGTC 169203 36 97.2 28 ..................C................. GCCTCTCCTCTTACGAGAGAGCAGCCAC 169267 36 72.2 0 ...............C.G..A.CTG.A....AG..G | ========== ====== ====== ====== ==================================== ============================= ================== 23 36 98.7 28 GAAGTCTATCAAGAGGATTGGTAACTGATTCCCAAC # Left flank : TTCCTACGTTTTGGGGCCGACGATTTCTGCGGATGACTGGTGCAATGCCCTGATTGACCTGGGGATTCGTCCTGGCCGCGATGTCTCACTGGTAGCCAGCGGCTGGTCTGCCGAGCGCGCGCACTGCCTATTCGATGTCGATCACTTTGATACGCGCCCCGACGAACTATTGAGGCGTGCGGTTGAAATGTTGGTCGCCCAAATTGATGGCGAGCCCCGAAAGGAAGCCGCCGCGGAAGCTGTAGCCGCCGATGCCGCGACCTCGGCAGATTCCGAGGCCAAGATCCGCCGTCCCGTGCATGGCCTGACCTTGCTTGATCCGATCTTCGTGCCTGGGAATACGGTTGTTGGTGCTGATCGGTCATAGCGTGAGGCCGTCTTTGGCCTTCAGTTTTTCTTTCGTAGATGCCGAAAAGTGCCAAAAATAGCGTTCGGGGCTCCGAATTTTAATCGTTCGAAGCCCCGAAAACCTTGCTATTCCACGGGAAAACCAATCCTCT # Right flank : GATAGTGAGCTGCTCAGGAGCCCCCTCCGTTTTCTGTTTCTTAGCCTGTTCAAAATGAAGTCCAGTTGCCCACTGACGATCCGTAATCCCGATAACTCGCACTTGACCTCCCTCTGGGAGATGAGACTGAATCTGTCGAAGAGTCGCATGGTTCTGCCCACCGCTTGGCCAGTATTTTGCATAAACACTGAACTGGACCATTGTGAATCCCCAATCCAGCAACGCCTGTCTAAATCGCGTTGCTTCCCGCCTCTGGGCTTTTGTTTCAACTGGAAGATCAAACATGACCAGACACCACATGGGACTATCCACCATCTCAACCACTCAGATCAGTGGATGCGGGTCCCTGCCATGCGGGAACTTTTAGGCGCTCTTCTTCTCCTTCAACATAACGCCCGTATTGCTGCGCAAGATCTTGAGCAACTGCCGAAATTCCATAACCATCCGAATCGAATTTCTGTGAAGCCGCAGCAACCAATATCCGCTTCACATCACTATCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGAGGATTGGTAACTGATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //