Array 1 269139-270325 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGN01000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N45412 N45412_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269139 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 269200 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 269261 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 269322 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 269383 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 269444 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 269505 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 269566 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 269627 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 269688 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 269749 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 269810 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 269871 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 269932 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 269993 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 270054 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 270115 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 270176 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 270237 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 270298 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 286486-287753 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGN01000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N45412 N45412_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 286486 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 286547 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 286608 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 286669 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 286730 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 286791 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 286852 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 286913 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 286974 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 287035 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 287096 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 287157 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 287218 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 287279 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 287358 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 287419 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 287480 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 287541 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 287602 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 287663 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 287724 29 96.6 0 ............T................ | A [287751] ========== ====== ====== ====== ============================= ================================================== ================== 21 29 99.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //