Array 1 164991-166912 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021131.1 Meiothermus taiwanensis WR-220 plasmid pMtWR-220, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 164991 37 100.0 33 ..................................... GCGCCAGCCACTTTTCCATCATATGGAAAAAGC 165061 37 100.0 37 ..................................... CCTGGGAGCCCCGCTGGATTGCTGGAAGCCGAAGGGT 165135 37 100.0 36 ..................................... GTTTTTTGGGCTCGACTCCTGCCCACCACCTTCGCA 165208 37 100.0 36 ..................................... ATGGAAATCTTTGATCGGCTCAAGGCAAAGGGAATC 165281 37 100.0 37 ..................................... TCGTGGCTCCAGCAGGCGATTCCCTCGATGCCCCCGC 165355 37 100.0 35 ..................................... CAGGTAGGAAAGCTCTATGCGGGGAAACTTCAGGG 165427 37 100.0 34 ..................................... ATATATCGTCCTGGATGTGATTCCATACCGCTGC 165498 37 100.0 37 ..................................... CGGCGAAACGGGCAGGGCTGCGCCACTGGGGCAGGGT 165572 37 100.0 38 ..................................... TTAGGCATGCGCCACCTCCACCAACTCCATATCACATT 165647 37 100.0 36 ..................................... GAACAAATACTAGAACCAGTTAATCCGGAGGCCACC 165720 37 100.0 35 ..................................... CAGCAACACACCGTATGCCATCGAGGTCTGCGAAC 165792 37 100.0 36 ..................................... AACGAGTGGCTCGAGGGCGTTGGAGTCGGTGAGTCG 165865 37 100.0 32 ..................................... GCTTCACTGGCCGCGCTCTCAGCGGCCACTGG 165934 37 100.0 34 ..................................... CCCCGAGATGGGGAAGTTTGTGATGCTGGTGGGG 166005 37 100.0 36 ..................................... TATGGGCGCTACCGGCTGTACAACCCCTCCGGGCTT 166078 37 100.0 35 ..................................... CTGCTCGACCACGGGGACATGCGGCTCGACCTCGA 166150 37 100.0 37 ..................................... TAGGGCGGACAGCGGAGATAGTATGAAGTAGACGCGC 166224 37 100.0 37 ..................................... TTCCGCGACGGCAGCTACCACATCATCCAACTCCAAC 166298 37 100.0 38 ..................................... TGCCGCAATGCGTAATATTCACCCAACGCCGGTGGAGG 166373 37 100.0 36 ..................................... TGGGGAACCCTCAACTCGCATACCTGGGTAGATAAG 166446 37 100.0 36 ..................................... TGGGGAACCCTCAACTCGCATACCTGGGTAGATAAG 166519 37 100.0 32 ..................................... AGGGGGCCTCCAGCGGGGGAACAAGGCAGTGC 166588 37 100.0 33 ..................................... TTGGATATGCGCCGTGCTGTACGCCCTGTATTC 166658 37 100.0 35 ..................................... TGCGATGGGCCAACAAAATCCACATTATAGTTGTT 166730 37 100.0 35 ..................................... GGCAAACCGCGCCAGAATGCCATCCAGCACCAGGC 166802 37 100.0 37 ..................................... ACCGATATGCCCAGCAGACAGGCCTTTGGTGGCCCCG 166876 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 36 GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Left flank : GCACTGGCAGGTAGAGAACCGCCTGCACCACCCCCGCGATACCGTCTTTGGTGAAGACGCTTCCCGCAGCCGCAAGGGGGCCGCTGGGTTGATGTATTTCCGTGATGTGCTCATCAACCTTTTACATCTCCACAACCTATCCCCACTGCGCTCCATTCGCTACTTCTCTGCCAACCCCAACGAACTCTACCAGTTGTTGTGCCCTTCGTGATAAAAGCCTAGTTAGTTTAGAGGCTTTTATCGTATACGCCGTATGATACTATGAAGCCGAGGTATGCGCGATGGAGGCATCCTCTTTTTTGTAGCCGGTCTCACCTTTGCGCGAACCCCAAGCAGGTGGCAAAACCCGGGGGGGTTCGCGCAAAGCGAGAAAGCGGCTAGGGGACATTGAAAACCCGTTTTCCCCCCACCTTCCCCCACCCTGCGTCGGAGGCCTTTTTGAGGGGGTTCGCGCAAACGGCCTCTTGAAACCCGTCCAGCACGTACGCTAGGATGAGGCC # Right flank : CCCTGCTCACGCCTGTTCTCGATAGCCTGGGTGGATCCAGGAGTGGCGCGACTGGCTGCTTTCCATGGGCTTTGGCCGAAGAAAAAGCGACACATCCCTGCCCGCCCAGGCTCTACCGCTTCCTGTGGGCCCTGGAAGAGCAGGTCGTCGCCCTGGAAAAGGCCCTGCCCTGGCCTTTTTCGGCAGGGGTCACTGGGCGATAGAGAACAGGCTTCATCACAAGAGGGATATCGTGCTGGGAGAGGATGCCTGTCGCACCCGCAAAGCGGCCCAGGCCCTGGCCGCTTTGCGCAACCAGCTGCTGGGCTTCCTGCACCGGCTTGACGTTCCCGTGCTGCGCAGTGTGCGTAGCTTCTCCGTCAATCCCATGCCCCTCTTTCGCTGGCTCAGTGGGTGTATGTGAGGGGTGCATACGATAAAAGCCTGTGGCTTTACGAGTGATCGCTTGCTCATCGAGCCTTTTATGTTAGACTCTGCAACTGAGCAGACCTGACATACAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 1 11717-11974 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021130.1 Meiothermus taiwanensis WR-220 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 11717 35 100.0 36 ................................... TTGGGTTTACGCATAACAAACACCCCTCACGCTTGG 11788 35 100.0 42 ................................... ACTGACCTTGCCTCTACATCCGTGCTTGGCGGATATCGGCCA 11865 35 100.0 40 ................................... CCGACCGCCGCCGCGATGTGTTCTGCCGCCCGCGTGACAT 11940 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 4 35 100.0 40 GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Left flank : ATCCGGGCAAACTGGGCCAGCTCGAGGCGGGTGGCCGCTTCGGGCTTGGGCAGCGCCTCCAGCAGGTACTGCTGGATGGCCGCCCGCACCTGGGCCGGAGAAAGATCGGCAACCATGCCCAAATACTACCCCCACACGCCCCCGCCCGACACCGCCTGCCAAAAATGCCTGCGCGATCGCACCCACCCCACACCAAACTCAACCCGAAACCAGTCCAGAACATCACGGAAGCACTTTCACCAAATAACCCATTCTGTTTTGCGCAAAATGCTATAATGCTCCCGTCGAGCAGTTCGATAGCGCACTTTGAAAGCCAGCTTTTGCGATGAAAAAGGCAAACCCACGCCACAAAAAATCTAAAAGCGTGGAAAAGTAAGCCCTCATCGCAAAAAACGCACTTTTTACCCCAGTTATCCACAGGGGAGCTGTGGATAACTCCACTTTCTCATAAATACCCCCTCCAGCACCCCTGTACAGCACGGCGTTTAACGGGGTATGCT # Right flank : CAAAGCCAAACTTCGTGGCTTGGCGCGGCGAGGAAGAATGCTTCCGTGTGCCAGCGTGAGGGTGGGAACTGGTGGGTTTTCTGCTATTCCAATAGCTTCATCAGTTGCTCGGGGCGGATTATCCGGGTTTTTCCCACTTTTTTTAGGGATAAGACGTGCTCTTCGTCCAGACTAACCAGGTAGTTGGCTTTGCCTTCGGTGGCAATAAGCAGTATCAGGTCGTCGTCGGTGTCTTGTGACAAGGGTTTGGCTTTACCGTGCGGCACCAGCTCGGCTCTGGCCTTGAGGGTGTTGATCATTGCCCCGGCTTGGGCAGGCCGGATAATATCTTTGAACTTGGCGTAACGGCTTACGCGACGCAGCTCAGCAAGCTGTGCCCTGGAGGTGAGGAGGGTAAACTGGCCGCTCCGCCAGGCCCAGTACACCCGGGCTACGCGGGACGCAGGGGCAATGAGAGTAGAAATGTAGATGTTGGTGTCGAGGACTACCCTCACTGTTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 1527797-1526235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021130.1 Meiothermus taiwanensis WR-220 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1527796 37 100.0 36 ..................................... AATATTCTATTGATGTTTTTGAGGTTTTAGATATTA 1527723 37 100.0 35 ..................................... CGTGATGGGGCGAAGGGGCCGCGGGCCCCAGGGGC 1527651 37 100.0 35 ..................................... ATTCGTGGATGGGCGAACTATTACCGTCACTGCGC 1527579 37 100.0 33 ..................................... GGAGAATTGCACGAGGTGCCGGCATGAAGGAAT 1527509 37 100.0 36 ..................................... GTAGACCTCGGCATAGCTCCGGGGCTTGCGCAGCAG 1527436 37 100.0 34 ..................................... TGCTCCTTTGCCTACGCCAACCTTTCGGAGGCGG 1527365 37 100.0 35 ..................................... TGATAACCTTCACTAATAGGCGTGACTGCTACAAC 1527293 37 100.0 35 ..................................... AATCTCGACCTCTCCAACAGGAGAGATTTCTTTTA 1527221 37 100.0 35 ..................................... TTATCAACATATACTCTTACAACAACACTACAATC 1527149 37 100.0 40 ..................................... TAGGACCTCCCTTTCAACCTCCTCCAGGGCAATGAAGCCC 1527072 37 100.0 34 ..................................... AAGGGGGCCCAAGAGGCCGCCAGGCTGTTCTCCA 1527001 37 100.0 36 ..................................... CCAAGGACAGGGATGATCCTCGGAAGGCAAAAAGGC 1526928 37 100.0 35 ..................................... GTCCACCTGGACCGCTATGTCCCTGCTCTCCAGAA 1526856 37 94.6 37 ..C............G..................... ACGGCTGATGCGATGACGCTAACCGATACAGCCACAG 1526782 37 94.6 36 ..C............G..................... ACCGCCTGATTAGCAATGTGTTGGGTCAGGATGCTT 1526709 37 94.6 38 ..C............G..................... GCCAATCCATTGCCAGCGCCCCGCATATCCCGTAGGGT 1526634 37 94.6 34 ..C............G..................... ACCGTCAACCGCCCGGATGTCCGGGAGGTGCTCG 1526563 37 94.6 36 ..C............G..................... TTGACCGGCGCCGTTGTGATGGTCCTCCAGGGATCA 1526490 37 94.6 35 ..C............G..................... GCGGATATTGGGCTGGTTCCTACCTGGCGGATGAT 1526418 37 94.6 37 ..C............G..................... CTTGCCCGGGGCTTATGTGAAGGTGCAGGTGGGCAGC 1526344 37 94.6 36 ..C............G..................... TCGCAAGAATCCTTTTATGCGGTTTTTTACGTATGT 1526271 37 86.5 0 ...............G..........CA..CA..... | ========== ====== ====== ====== ===================================== ======================================== ================== 22 37 97.4 36 GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : TGGAACGGCTGGATATTCTGGTTACCTACGACGTAAACGTGACCTCCGCAGACGGTCAGGCGCGCCTGGCCCGTGTTGCCAAGATTTGCAAAAACTTCGGTCAGCGGGTGCAGATGTCGGTCTTCGAGTGCCGCGTCTCGCGGGCCCAGCTAGAAGACATGGAGGCCAAGCTGCTCAAAGTGATCGACCCGGACAAAGACAGCCTGCGCATCTACACCCTGCCCGGTGGTCGCGAGCGTTGTTTGCGCGTGCACGGTCAGGACAGGTACACTGATTTTGACGATCCACTGGTGGTCTAAGCCACCCTGGCACTTGCTTTGCGCGAACCCCAAGCAAGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCACCCTGCGTCGGAAGCTTTTTTGGGGGGGTTCGCGCAAACGGCCTCTTGAGCCCCGTCCTGCACGCACGCTAGAATGAGGCC # Right flank : GAATGGGGGTTAGTCCTGGTCTGTAGACTCGCCAGGGTTGGGGGCTTCCTTGCGCGGTTTGAGCAAGGGAAAGAGAATCACATCGCGGATGCTTTCTTGATTGGTGAGCACCATAGCCAGCCGGTCTATGCCCAGGCCCATCCCGGCGGCGGGGGGCATGCCGTACTCGAGGGCCAGCAGAAAATCCTCGTCAATCTCGGGCTCTTCATCGTCGCCGGCTTCGCGACGCTTGGCTTGTTCCTGGAAACGGGCGCGCTGATCGAGGGCATCGTTTAGCTCGGAGTAAATAGGGGAGAGCTCGAAGCCTGCCACAAACAGGTCGGCGCGCTCGGTGAGGTTGGGTTTGTTGGGGTCGCGGTGGCGTTTGACCAGGGGGCTGATAGCGAGGGGCACATCCACCACAAAGGTAGGCTGAATCAGGGTGTGCTCCACATAGTGCCCAAACAGCTTGTCCAGCAACTTGTAGCTGGGTACGCTGCGCAGCTCGGGGTGCTTCTGAT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 3 1546185-1548113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021130.1 Meiothermus taiwanensis WR-220 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1546185 37 100.0 37 ..................................... AATGGAGTAGGGAATGCGCGGGGCCCCGAATGCATGG 1546259 37 100.0 35 ..................................... CTCGGCTACCTGGAGGTGGCCGGGTACAGGCACCC 1546331 37 100.0 36 ..................................... CTGCAAACGAAGGTGAAAGGGGTCTGCGGAGGCACC 1546404 37 100.0 35 ..................................... ATGCGGCCTCATAAGGAATATGAGCAGTGGTTGCC 1546476 37 100.0 36 ..................................... CTGCAAACGAAGGTGAAAGGGGTCTGCGGAGGCACC 1546549 37 100.0 35 ..................................... ATGCGGCCTCATAAGGAATATGAGCAGTGGTTGCC 1546621 37 100.0 38 ..................................... AGGCTTACCGTTGTCTGCATGGCCTCCCTTTCCCTAAG 1546696 37 100.0 36 ..................................... CCATGCCCTTTTGCCTTCTGTTGCCCCTAAACCCTT 1546769 37 100.0 38 ..................................... TATTTAGGGGAAAAGCTCTTGGGGGCCCCGGATAGGCA 1546844 37 100.0 36 ..................................... AAGCCCGGCAAGGAGGACACATGACCCAGGATATGC 1546917 37 100.0 37 ..................................... TCAACCCGCGTATTTACGCCCTGGTAGGACGGGTGGC 1546991 37 100.0 36 ..................................... ACCTCTAGCCTTTGAGCCTCTACCCGCATCGCCAGG 1547064 37 100.0 36 ..................................... GCGCCAAGCGTCACCAGGCCTGCGGAACCCAGCCCG 1547137 37 100.0 36 ..................................... GCGCCAAGCGTCACCAGGCCTGCGGAACCCAGCCCG 1547210 37 100.0 34 ..................................... CGCCATAGCAAAGGAAGAAGATTGCCAGAAAGCC 1547281 37 100.0 36 ..................................... GTCCAGGATGATGCCAGCCTCATTCGGGAAAATGAC 1547354 37 100.0 37 ..................................... ATTTTGCGAGAACAGCACCGGCAAGCCTTTGCCATAT 1547428 37 100.0 35 ..................................... CTCAAGGCCTGGATCCCGGTTGAAGCTATAGGCCG 1547500 37 100.0 37 ..................................... ATTTTGCGAGAACAGCACCGGCAAGCCTTTGCCATAT 1547574 37 100.0 35 ..................................... CTCAAGGCCTGGATCCCGGTTGAAGCTATAGGCCG 1547646 37 100.0 35 ..................................... TTGAGCTTCGCCATTTTGGCTAACCCTTTAGTTTT 1547718 37 97.3 35 ...............A..................... TTGAGCTTCGCCATTTTGGCTAACCCTTTAGTTTT 1547790 37 97.3 36 ...............A..................... AGCACGCCCCCTAACAGCAGCCACACCACGGCCTGG 1547863 37 97.3 34 ...............A..................... GGTTGCCATATCTACCATAGCTATTACATCTGCT 1547934 37 94.6 33 .........A.....A..................... CGCTTCAACAGCTTGTCCATTTCAGGGCCAGAC 1548004 37 100.0 36 ..................................... TGATCCTCCATCCAGGTTTTTAGCAGTTTCTCGGTT 1548077 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 99.5 36 GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Left flank : CTGCGGCAGTTTACGGCGGTGGACACGGTAAGCCGCTGGGGGACGGCGGGGGTGTACAGCCGGGCGAGTGCTAAGACGGCGCTGGATTTTCTGCAGCAGCTGGTGCGGCGATGTCCTTGTGTCATCCGTGCGATCCAGGTGGATGGGGGCAGCGAGTTCATGGCGGAGTTTGAGGAGGGTTGTCGGGTATTGGGGATAGAGCTTTTTGTTTTGCCGCCGAGGAGTCCGAAGCTGAACGGGATGGTAGAGCGGCTGCAGCGGACGTTTCGGGATGAGTTTTACACGCGGGCTTTACCGCTGGGGATAGAGGCTATTCAAGGGGAGCTGGAGGGTTATCTGGAGCACTACAACCTGCACCGGCCGCACATGGCCCTGGGGGGGTTGGCGCCGGTGGAGTACCTGGCTAAGCTACAGGAGGTGTCGGTTCCCCTGGAGTCTCAAATGTATTGACCGATTACAGCCTCTTGAAACCCGTCCAGCACGCACGCTAGGATGAGGCC # Right flank : CTACTACGAAATTTCAAATATCCGTCATTCCCCTCTCATCAAAAAGCCCAATAGGATTAGAGCCATGCGCTTATGCATAGCCCTTCTGGTTGCTCTGGGCCTGGCCTGGGCTCAGAATACCCCCGCACAGACAAACCCCTATGCAATTGCTCGCATCGTTGCGTTGGGTCAAGAACGTGCAACGGTGCGTATTGGTAATCAGGTGGCGGAAGCTGAGATGCCCACAGACGGAATCGACTTTCGCGTTGGGCAGTTGGTAGTGGTCTATCAGGCTGACGGAAAAACCTATCTTACAGAACCCTACCGCTTGCATTATCTGTGGGCTTTACTTGGATTGTTTGTGCTTTTCACCATTGCACTAGGACGCGGTAAAGGCTTGCGAGGGCTGCTTGGCACAGCAGCCAGCATGGGCGTTCTGGCCTACGTTGTGGTGCCTCAAATTGCCGCAGGCAGCAACCCTTTACTGGTTACCTTCCTGGGTGCGTTCGGCATTTTGGCGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 4 2426874-2427207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021130.1 Meiothermus taiwanensis WR-220 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2426874 37 94.6 37 CC................................... ATGTGGGCCTTGAGCGATGCGGCCAGGGCATCCAGAG 2426948 37 100.0 37 ..................................... GAGCCACAGCCGGGACAAACCCGGAAGGACGTATCCG 2427022 37 100.0 37 ..................................... CCGGGGGTTGAAAGCTCGCTCTCGGTTGGCTGATAAA 2427096 37 100.0 37 ..................................... TTACCACTGCCTGGATCTGCCCCCGCTCGTCCCTAAT 2427170 37 91.9 0 ............................A....G..G | G [2427202] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 97.3 37 GTTGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Left flank : CCATCCTGGGTCTGGTGCCGCGCATCGTGCTGGCGAGCCTGGTGGCCTACTGGGTGGGTGAGTTTGCCAACAGCTATATTCTGGCGCGGCTTAAGGTAGCCACCCAGGGGCGCTTTTTGGCCTTGCGCACCATCGGCTCTACCCTGGTAGGACAGGGCCTGGACACCGCCATCTTCCTGCTGGTGGCCTTTTATGGCATCTGGGACAACAGCCTGCTCTGGACGGTGTTTGTTTCGAACTACATCTTCAAAGTTGGCATAGAGGTGCTTTTTACACCCCTTACTTACGCCGTGGTGGGATTCCTAAAGCGCGCCGAAAACGAAGACTATTACGACCGCGACACCCGTTTCAACCCCTTTGCGTTCCGCTAAGCAACTAGCCCCGCATATCTGGTAGAATGCGCGAACCCCAAGCAGGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCCAGGGGACATTGAAAACCCGCTTTTCCTTTACCTTCCCCCAC # Right flank : GCATGACCCTTCTAGAGGAGTTGGGCAGGTTTTTTCCGCCGGGGCGCTTGTTGCACAAGCCGGGTGAGCTGGTGCCCTACGAATCCGACGCCCTTACGGCCTTCCGGGCCCGGCCCCTGGCGGTGGTGCTGCCCGAGAGCCACGAGGAGGTGGTGCAGGCGGTGCGCTGGTGCGCCAGGCACCGGATACCCTATGTGGCCCGGGGCTCCGGCACCAGCCTTTCGGGGGGCTCGCTACCGATTGATGGCGGGCTTTTGATTGGCCTCAACAGAATGAACAAACTGCTGCGGCTGGATCCGCAGGAACGCATCGCGGTGGTGGAGCCGGGCTTTATCAACCTGCAGGTCTCGAACGCTGCCGCCCCCTACGGCCTTTACTATGCCCCCGACCCCTCCTCCCAGCCGGTCTCGACCATTGGCGGGAACCTGGCTTTTAACTCGGGCGGGGCCCACTGCCTCAAGTACGGCATGACCTCCAACCACGTGCTTGGGGCCAAGGTG # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 5 2762951-2760170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021130.1 Meiothermus taiwanensis WR-220 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2762950 29 100.0 33 ............................. GTCAACCACCACCACTTTGAGTGCGTAGTTACC 2762888 29 100.0 32 ............................. CGCACTGGGGCTATACCGCCAAGGAGGCCTCC 2762827 29 100.0 32 ............................. AGAAAAGCCCTAAATCAGGGGCGGTTGCAGCC 2762766 29 100.0 32 ............................. GCAAACCTGGCAGTAGGAACCATCGAGCACAT 2762705 29 100.0 32 ............................. GGTGTTAATACCTCGCCTCTTCATTGTCTCAA 2762644 29 100.0 32 ............................. AACGTCGTGGTGCAGATGTCGGGCGGCAAGGA 2762583 29 100.0 32 ............................. AGCAACCCAGGACAGGAATATGACATTAGACC 2762522 29 100.0 33 ............................. TGGGGTTGCGGTGCGCTACATCCCCCCTGCTGC 2762460 29 100.0 31 ............................. GCTGAAGCGGACGGCTGAAGCGGACGGCTAA 2762400 29 100.0 32 ............................. TGATGAACTGCTCTCGCCCCTGGATAATCTTC 2762339 29 100.0 32 ............................. CCGTCAAAGCCAACCCCGAGGTAGTCCAGGCC 2762278 29 100.0 31 ............................. CCCGCCTGCGCCAGGACGGAACCCTGGAGCC 2762218 29 100.0 33 ............................. AGGAGTACCTGCCCGCAGCGCTGGCCCTCGGGC 2762156 29 100.0 32 ............................. AGCGCAACAGTACCGCTCGGGTTCCCTGCATC 2762095 29 100.0 33 ............................. CGCCTATCGCTATGCTGAGGACATCCTGCATGA 2762033 29 100.0 31 ............................. AACACCTCCCGGCAGTGCCCTGCCTGCGGGC 2761973 29 96.6 32 ............................T ATTGCAAAAATCCTTGGGGAGAGCGGCCAGGG 2761912 29 100.0 32 ............................. CTGGGAAAAGGCGCGGAGCTTCCTCTTCCCCA 2761851 29 100.0 32 ............................. CTGTCGGTTAGCTCCTGAAGCGACAAAACCCC 2761790 29 100.0 32 ............................. GAGGAGAACATGCTAAACTGGAACGAAACCGT 2761729 29 100.0 32 ............................. TTTCGGGTCAGGGGCCAGATTACCCCCCAGCC 2761668 29 100.0 32 ............................. CGGCTGGGGCCAGTGCGTGCGAGGGGTACGCG 2761607 29 100.0 32 ............................. GTCGAACGGCTTGATGGTCCCCCCGAGCGGAT 2761546 29 100.0 33 ............................. GCCCTATGGCGGCCCCGCCCCCTACGCCTACCC 2761484 29 100.0 34 ............................. CTGAGGACGCAACCTTTGAGGAAATCCCCAGCGC 2761421 29 100.0 32 ............................. ACCTGATGGCCGCGCTGGAAGAACTACGAGCC 2761360 29 100.0 33 ............................. AGGCAGAGGCAGAGGCGGTGGGCTCTGAGGAGC 2761298 29 100.0 32 ............................. ATATTGACCGCCCGCAGGGGCAGAGGGGAGGG 2761237 29 100.0 33 ............................. CCGCCCTCGAGGCCGCCATCATGCAGGCCATGC 2761175 29 100.0 32 ............................. GAGCGCTTCCGCTACACCCCCTGCCCTGAACT 2761114 29 100.0 33 ............................. CATCTCTTGATCTAACAGCTTAGCTTTCACGGA 2761052 29 96.6 32 ............................A GCCGGGGTGGTGCCCATGCTACCCCCTGCGGC 2760991 29 100.0 32 ............................. GCGGTAATGGATGGTGGTTCGGCTAGGGGATA 2760930 29 100.0 31 ............................. TGCCGCACGCAGGCCCGGAAGACCTCAGCCC 2760870 29 100.0 32 ............................. GCGAGCGTCCCCACCGGACGGCAGCGCGGAGG 2760809 29 100.0 31 ............................. GGCCACCAGATTGCTCATAAAGGCGCGCAGC 2760749 29 100.0 32 ............................. AGCATCAGCGCTTCCCCTCTCCCAGCCGATAC 2760688 29 100.0 32 ............................. GGAATCCCGCTTAGATCACCTCCGGCGGCCTG 2760627 29 100.0 33 ............................. TTCCTGGAAGGCCCGCTTGACCGCGCGGGTCAG 2760565 29 100.0 32 ............................. TTGTCCGTACTTTTGATCCTGATACTCTCTCT 2760504 29 100.0 33 ............................. GTCTACGGGAGCTTCCTCGTCTACTGAGATCTC 2760442 29 100.0 33 ............................. CGCGGACAGTCCCATGGTTATTGCGTGATGAGC 2760380 29 100.0 32 ............................. GCTACAGTAGCCAGAGTATTCACCGCCTCCAG 2760319 29 100.0 32 ............................. CGAAGGATTGGAAAACGTGCCGGTTGAAGTGG 2760258 29 100.0 31 ............................. GGCCTTCGCCCAGCTCGAATACCGTCAAGGT 2760198 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 46 29 99.9 32 GTATTCCCCGCACCCGCGGGGATGAACCG # Left flank : TCTTCGATGCCCTCGAGACCCCCGACCCCTACGCTGCCGACCCCGCAGCACCGGGCGATCTATGGGATCCCGACGGCCCGGTTCCAGGTGGGATAGCCTATGGTAGTGATCGTCCTGGAGAAGGTACCCAAGACCCTGAGGGGTGAGCTCTCGCGCTGGATGCTCGAGGTGAGTACCGGTGTGTTTGTGGGCAGCGTTTCGGCGCTGGTGCGCGACCTGCTCTGGGAAAAGTGCGTCGCCAAAAAAACTGCTGGACGCTGCTGCCTGCTCTACCGCACCAACAACGAACAGGGCTTTGCCATCCGAACCCATGGCGACACCACCCGCACCCTCGTAGACTTTGACGGCCTGACCCTGGTGGCCGTGAAGAATGCCGAGTGGGAGCGTATGCACCAAAAGCGAAGTAGAAAAGCCAAACCAGGGGTGAATCTTGACAATCAGACTCGGGATTCTGACACTTCCGGGGGCTCGAGCGGCTAGTTTTGCTGTTAGAATCAAGT # Right flank : TTGGCCCCGATTGGGGTCAGGGTATGGGTTGGCGAGATTGGCTCGATTATACGGGATTTTTTTCTGCTGCGCGGCTTTCGGCAACCGTCTTTTGCCACGCATCCCGAAGCCAGTCCTCGGGGGTCAGCATCCGCACTGTACTCAGCAAATCCCAGTCGTTATTTTGGCGGGCAATTTCCACCATTTGCGGCCAGAGCCGCTCAAAGTCCTCGCGGGTATAGCGGCCTTCTCGGTACAAGATGTACATTTCGTCGTACAGTTCGGATATCGGGTGGGGAGCCATAACTACCTCAAGCTGTTCAGAAACCAGTCTTCGGGTTCAACATACGCACCGCATTAAGTGCCTCGTAATCTCCGCCAGAAGCCTCGATTGGTTACAGCCAGAGCTGCTCAAACTCTTCCTGTGTATAACAGCCATCGTGCCAAGATGGTGGTCGTTCAGGTTTGCGACGGCTGGCTTGTTAGTTGTCACGTAAACTCCCGGGCAGTCCCTACATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //