Array 1 119820-119974 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRU01000024.1 Streptomyces cinnamonensis strain JCM 4019 sequence024, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 119820 28 96.4 36 ........................A... CAAAGGGCTCGCTGACGCCGTCCGTCAGGAGCGCGC 119884 28 100.0 35 ............................ GCAGAGGCTCGCAGGCGCGTGATGGAGACGTGTGT 119947 28 96.4 0 ................T........... | ========== ====== ====== ====== ============================ ==================================== ================== 3 28 97.6 36 AGCGATCGATGGCGGCCTATGTCCGGCC # Left flank : CGAAAGACTGCCGGGAAGCCCCCAAAGGAACGGGCCGGGTGTTCCTTTTCAGGGACGGGCGATTGCCCTGCGCGGGCGAAGCCCGGGGCGCGTCTGATCGCTACGCGCTCCTGACGGACGGCGTCTGCGAGTCTCTGTGGCTGGTCATAGGCCGCGCTCGATCGCTACGCGCTCCTCGACGACTGCGTCCGGCCCTCGTCTGGGGCTGAGGGGGGCGGAATCGAGGGGCGGGAGGGCGATCCATCGGCTCAGCCGATGCCAACCCCTATCAAGACCACGGTGAGAGCCCACCCGCCGGTACAGGCAGGGGTAATTGGGGCATATTGGAGGCTCTTTGGGGCGCGCGCTCGTCCAGGCATGGATTGGCATCGCTCCAGCCGTCATCTGACGCTTTTCCTCCCCACGCAGGGGCCAGACGCCGTCCGTGAGGAGTGCCGGAAGGTTTCTGCGGCCTATGGTCAGCTCCAGACGGACCGCAGACGCGTGATCGAGAAGCGCGT # Right flank : CACAGGGGCTCGCAGACGCCGAGCCTTCAGGAGCGCGTAGCGATTGGACGCGCCCCGGGCTTCGCCCGCGCAGGGCCGACGCCCCGTCTCTGAAAGCTGAGACCGGCCCGTTCCTTTGGGGGCTTCCCGGCAGTCTTTCGTATTTCCGTGGCGGGACGGGCGGTCAAGGGTGGCCGAAGGCCATCACGAAGTGACGCGACCGCAGGGAGCGCCCTTGACGGGCCGGCCCGACGCGGAGAGACGATGGGACTGACGGGAAACCCCCAAACCCTCCCTGATCCCGACCCGTATAGGTCCCGCCCGGCGTGGCCCCCACGTCCGTCCGGCTCCGGCCGCGCGGCTCCGCCCCCGACACCACCGGCGCGCCCTTCCGGTCCCGCCCGAGTGGGACCCCCGACCCGACCGTCCTCAGTCGTTCAGCAGGCGGGCCTTCGCCGTCGTGAACTCCTGGGGGGTCAGCAGGCCCTCGCGGGCCAGGTCGGCCAGTTGGCGCAGCTCCG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCGATCGATGGCGGCCTATGTCCGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 10234-11345 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRU01000090.1 Streptomyces cinnamonensis strain JCM 4019 sequence090, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 10234 29 100.0 32 ............................. TTCCACCATGCCGTCGCCAGCGTCCTTGATCT 10295 29 100.0 32 ............................. ATCGTGCCCTCGCTCAACAAGGCCGCGGAACA 10356 29 100.0 32 ............................. GGGACGCGGCCCTTCGAGCCGCGGGCGGACTT 10417 29 100.0 32 ............................. GCCGGCACTCTCCGCACGAACCGCACCGGCAA 10478 29 100.0 32 ............................. TCATCCAGATGGCCCGCAAGTGCGGCATCAAG 10539 29 100.0 32 ............................. CACGCACAAGGAGGAAGGAAGCGGCGTGAAAG 10600 29 100.0 32 ............................. TCGACGGGCTGCGGGCCGACTCGCTGGCCGGG 10661 29 100.0 32 ............................. GCGTACGTCGGCTGCACGCTCTCGGGGAGCTG 10722 29 100.0 38 ............................. TTGGCGTGTGCGGTGCGGCGCTGGGCCTGCTCCTGCTC 10789 29 100.0 32 ............................. GGTACCGCCACCATTGCGCCGGAGGCATTCCG 10850 29 100.0 32 ............................. AGACATCATGCGCCTCGCTTCATCTCAGGAAT 10911 29 96.6 32 ..............T.............. CCCTCTGCGGGCCCGAGCACCGCGTCGCGCTG 10972 29 100.0 73 ............................. TACAGCGGGCGGATGGTCCGTACGAGGTGCAGCCGCCCCCCGCACCGTCAGTGGCAGGCGCTACCGTTGCCGT 11074 29 93.1 32 G............T............... TGCTGCAGGGACTTCTCGCCGGCCTCGGAGTT 11135 29 96.6 32 ............................T GGTGAGCGTGGCTTGCCTGACCGGCTGCGTCG 11196 29 96.6 32 ............T................ GTCATCGTCCCCGACGGACTGCTGATCCCGGA 11257 29 96.6 32 ................T............ ACCGGGTGACGGATCCGGCCCGTGTTCATGAC 11318 28 82.8 0 ....A................T.A.-..T | ========== ====== ====== ====== ============================= ========================================================================= ================== 18 29 97.9 35 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ATCGTCACCCTCCAGTCAGACCGAGAGGTGACCGTTCCCGCTGGCCGCAACTACGCCGAAGCGGTGACCTGGTGACAGTCATCGTCCTCACTCACTGCCCGCCCGGCCTGCGGGGATTCCTGACCCGCTGGCTCCTGGAGATCTCTCCGGGAGTCTTCATCGGAGGCCCGTCGGCGCGCATCAGGTCAGTGCTGTGGCAAGAGGTGAAGCAGTACGCGGGAAACGGGCGTGCCCTCCTGGCGTACAGCTCGGACAACGAACAGGGATTCGCGTTCGAGACGCACGACCACAAATGGCACCCGGTCGACCGTGAGGGAGTCACCTTGATCCACCGCCCCAGCGCCCCCACCGCACAGATGCCACCACCGTCCTCAGGCTGGAGCAAGGCCTCCAAACGCCGACGGTTCGGAACACGTTGAATGCATTTGAGCTCTATGTCTAAATATCAAGAAGTAGTTCGTGGCGGCCTTCACACCGACTAAAACCTCAGGTCAGGAAGT # Right flank : TGGCCGGGCCCAGCCAGAGGTGCTTTCCTGGGGATGCCCGGTGCCAACGGACCTACCCTTCACACCAGCGGGGGCTGGAGTGAGTTGGTACCCGGCGGACGCTGCCGCTGCCAGAATCTCGGAGGGCTGACAGCCTGAGCTCTCGTAGCTATTGGGTGAGTCTGGTGGGCGGAAGGCAAACTTCGGTCACTTCCTCGGCCCGGTTTCGCAGGAGCGGGGCCAATTCGACGTACCAGCCACGGCCCACGGCCTGAAGCATTTCGGCGAGGGCGATCTGTTCGCCGATCCGGCCGGCGGGGGTGTCGAGGACGTGGGCGAACTCGGCACGGATGCGGTCGGCGACGGCGGGGACGCGGAGGCTGTTCACGTACAGCATTGCGGGGTCGTAGCCGACGGGGACGGCGCCCCAGCGCTCCCAGTCCAGGATGACGAGGGGGTCGTGGGTGAGGTTGGCCCACTGGAGGTCGGCGTGCCCGGTGACGCGTTCGGTGATGGCCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2326-2597 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRU01000081.1 Streptomyces cinnamonensis strain JCM 4019 sequence081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2326 29 93.1 32 .....C..............T........ CTGAAGGACCGGATCACTCTCTGCCCCGACTT 2387 29 86.2 32 ...T.CT.......T.............. ATGTCGCCGATGGTCACCTCGCCGGAGTTGGC 2448 29 100.0 32 ............................. ATCACCCGTGCCGCGGACCTTGCCCAGATCGG 2509 28 96.6 32 .....-....................... CTGCGTGAGGCGACCATGACCACACCTGACTT 2569 29 96.6 0 .....C....................... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 CTGCTTCCCGCACCCGCGGGGATGGTCCC # Left flank : TCCGAGGGACTGGCGTCGATCAGACCGATGGCAAGGGCACGGCTGATGGCCAAGCGGTTGGAGCCCCACCGGTCCCTCGCCCCGGTAGGCGCGCTACTGGAGCGCGCGAAGGGCTAGCGGGTGGCCCGGTTGATCCAGTCCAGGTACTCGGCACGGCCGGCGTCGATCGTGAACGCGATGACCTCAGGCGAGTCATAGGGGTGGTTGTCCACCAGATGCTTCTCCAGTGCCTCGCGCCGGTCACCGGTCGTACGAAACGTCACCTGATACTCGATGCCCTCGCAGACCTCCCCGAGATGGCGGTACGTCGTTTCAATGGGCCCGGTCACCTGCCCGGAAGCGGCTAGGCTCGCCTCCACCGCCGAGCGCGACAACTTACGCGCAGCATCCTGATTGTCCACGGTCGTGATTACGATCAAGAAGTCAGCCATAGGGGCAACGTACCCACCCAACCAGTCGCACTCATATAGGAGGCAGTGAGACTTTGGGAGCACCGGCAC # Right flank : CGACACTGGCCCTTCGCCTGGGTCATGGCCGCGCTTTGACTCCTACCGTTCCGAGCCGTCCCGGTCTTCCCCAGCGCCCTCGTCGCTGTCTCCGAAGATGGGACGAAGTACCTCTCACAGGTCGAGGTCGAGGCGCTGAGCGGGGATGGACAGAGACCGCTGGACTTCACTGCTGACGTTGGTCGCCGTCGCTCGCCACTCCGCGACGAAGGGGTCGGCTTCCTGGCTGCTGTAGACCGTGATCGGATCCAGCGTCACGGTCTCATGGGGACGAAGGTCCACCGGAACGAAGCGGATGAGGGTGCGGTCCTCCTGCTGCTCGATGTCTGGGGAATGCAGGGACGGCAGCTGGTAGGCCGGCGGCTGCACCCCGAGCATCCTCCGGTAGCCGCCGAGGGCGGGGATGGTGCCCGCTCCGTATTTGGCTGGCTGGGAAGGCCAGTCGATCTCTTCGTCTGTGTCGGCCGTGACATGCGCCGAAACGGTGTCGGGGAGGCTCA # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTTCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7854-10152 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRU01000081.1 Streptomyces cinnamonensis strain JCM 4019 sequence081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 7854 29 89.7 32 G..........CG................ TACGTGCAGGACACCCCCGGCAGCGACATCGG 7915 29 100.0 32 ............................. TTTCCGGAGGCGACGCGGTTGGTGACGAACAC 7976 29 96.6 33 .......G..................... ACCTGCAGCACCGCGAGCACCTGCAAGTCCTGC GA [7997] 8040 28 96.6 32 .................-........... GCCGGCCGCCCCCTCCGCGGCGAATGCGGAAG 8100 29 96.6 32 ....................A........ CTGAGCTCCAGCTCCGGCGCGTCCGTGACGAA 8161 29 96.6 32 ................T............ GTCCCGTCCGCCTCCGGGCCGCTCGCGCTGCC 8222 29 96.6 32 .............T............... GCCGGCACCGGGTACGAGGACTTGAGGCGGGA 8283 29 100.0 29 ............................. CTCCGGGTCTCGATTCCCGCCGTCTCGGC 8341 29 79.3 32 GA...G.T.C..............C.... TCCAGCCCGACGAAAGGGGAAGCCATGCTGCA 8402 29 93.1 32 ...T................C........ CAGTAGGAGCCGGTTTCCGGCGCCGTTCGGCC 8463 29 100.0 32 ............................. TCGACCTGACCCGCCGCCGGGAACTGCTCGTC 8524 29 100.0 32 ............................. TCTGCCCCCGGGGCTGCGGCTACGCTGGAGCC G [8541] 8586 29 100.0 32 ............................. AAGCTCCTGCCGTCGATCGGGCGGTTCAGCGG 8647 29 96.6 32 ..............T.............. GGGCAGGAGGAGTCGGCATCCAGGTCCAGGAA 8708 29 96.6 33 ........T.................... ATCGGGCACCTGGCCGTGTTCGATGCGCCTTCG 8770 29 100.0 32 ............................. TGGCTCGGCGCGATCCCCGGTCACCTCTACAA 8831 29 96.6 32 ..............G.............. GCCGCTGCCCAGACGAGGATCGGGCCCGTCAG 8892 29 93.1 32 ............T....A........... CACGTGCCCTGGCCGCCGCCGACGTTCATGCT 8953 27 86.2 30 ...........-...A.-..........A CCGCGGCTGGCGGAGAAGTCGGTGCCGTGG 9010 28 89.7 32 .....-...........A......C.... GCCCTCAAGGCCGGCGGATCCCTGGCCGAGGC 9070 29 89.7 32 ................T....T.T..... ATCGCAGCCCCGCTGGATCAGCTTCGCCCCTG 9131 29 96.6 32 ..............T.............. GAGACCGGCATGCACGACATCAGGAACATCTT 9192 29 96.6 32 ......................C...... AAGGCCACCGTGCGGTACGCGTGGGGCCGCCC 9253 28 93.1 31 T....-....................... GTCCCGAGGTGGCATCGGACTGCCTGGTGCC 9312 29 100.0 32 ............................. TACCTGGCGAACCTGCGGCCGGACGGCTCGGG 9373 28 96.6 32 .......................-..... GCCTTCTGCACCGCCCGGTCCAGGCCGTCCCC 9433 29 93.1 29 ................T........C... GCCACCGGCGGCGGTGGTTAGAGCGGCTG 9491 29 93.1 32 ......T.......T.............. ACCAAGGGCAAGTTGGTCACGATCGAGGCGCT 9552 29 93.1 32 TC........................... TGCGGGGCGCCAACGTGGTTCAGCACGTGCGG 9613 29 100.0 32 ............................. GCGGTCGTGATGCCGGTGACCGTGCCAGCCGT 9674 29 93.1 32 ......A.................A.... TTCTGGGGCCGGATCCAGATCGGCCCGGACGT G [9689] 9736 28 89.7 32 ........T.A......-........... ATGCCGGTTCGCGCGGCGGACGACGCCTGCGT 9796 29 93.1 32 T.............T.............. ACCGACCTGTCGCTGGACCTTGCGGGCGCGCC 9857 29 93.1 32 .A...............A........... ATCCGCTGGTGCACGAAGTAGGGCGCCTCGAA 9918 29 89.7 33 ........T..C..T.............. TGCGCCGGCACCCGGCGGGTAACGACGAGTCCG 9980 29 96.6 55 .......................A..... TCCTGGGCGGTGGTCTGCTCCCCGCACCCTCAGTGGCAGGCGCTACCGTTGCCGT 10064 29 96.6 32 ...G......................... CACACCCTGCGCAGCCTGGCGGAGGCCACCTT 10125 28 86.2 0 .......A.......A......-.A.... | ========== ====== ====== ====== ============================= ======================================================= ================== 38 29 94.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCTGAGCTTGCCGGTGAGGAGCCGCTCGAACGTGAACTCCGCCTCCCCGTCCGCGCTGGTGGTGTCGACGAGCCACGCGGTCTGGAGCAGGTGCTGGAGCGCCTTGCGTTCGGTGTCTGCGGTGAACCTGCTGGCCTCCCCGTCGTAAAGGCCGTCCTGAGGCCGCGGCGCGAGGTTGAAGTCCCCGCAGATCAGCAGGGCCGCCCGCCCTCGGCGGCGGCAAGCGTCGCGAGCTCGCCAAGCTGGGTTGTGCGCGCCGCGCTGGTATAGGCGTCGAGGTGGACCTGAAGGACGGTGAGCCAGCCCAGTTCCACTCGCTGCGCCCAGCCGGTCGGTGCGGAGGCGGATGTCCTCGCGGACCCAGGTGGCGAGGTAGCCGTTCCCGCCCGCGAGGACGTACCCGGGCAGGAGCGGCGGGCGCCGGTCGACGGGCTTGTACGGCTCCTGCGCAACCCGCGAGGTGGTCCGGACGCGTCAGCGTAGGGGATGATGCTGCCCTC # Right flank : CCACCGGCCACCTGCCCATGGTCGAAAGCCCCGGGGAATGGCAGCGGCTCATCACCGACTTCCTCGCCGAGCACGACGCCTGAGAGACGCACGACCCCGAGCCCGAGGGAGGGGTCCCGGGCTCGGGGTGTGGGGCCTGCCGGCGTCCGCCTACTTGAAGGTGACGTCCGAGCAGGAGTAGAAGGCCTCCTCGCTCTGGAAGGAGCCGTCGGGCCGCTTCAGCCCGTGCCAGATCGTGTAGATCAGGTGCTTGCCCTTCTTCTCGGGGAGCACCGTCTTGAACGTGAACGCCTTCGCGCCGAGGAAGCCCGAGGGGGCGGCCGTGGCCGCGGTGTTGTCAGCGCTGAGGAAGGGGGTGTCCTCCAGGTCGGACCACTTCAGCGGCTTCTTCGGGTCGTAGCCGTCCTTGGTGACGTACATCTCCATGCGGTACGGGTTGTGCAGCGCGCTGATGTCGTAGCGGAGGTCGTACTCGGCCCCGCCGGGTAGCGTCGTCGAGG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [19-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //