Array 1 43972-45220 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPE01000013.1 Escherichia coli strain MOD1-EC5917 MOD1-EC5917_13_length_125461_cov_29.2284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43972 29 100.0 32 ............................. TCCGTAATAGCCGAACAAATCACCGAGTTTGA 44033 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 44094 29 100.0 32 ............................. TTTTCGGTAGTCGCGGCGGCGGGTACGTGATT 44155 28 96.6 32 ....................-........ ATGATCGCCGCCATGATTACTTGCCTTTTTTG 44215 29 100.0 32 ............................. TAAATTAAAAATCGCCCGCACCGACTACCGAT 44276 29 100.0 32 ............................. CGGGCTAGTCCGTTGTGATCGCTGCGGCCACG 44337 29 100.0 32 ............................. TTGGCTGGGGCCGGAATCCGGCTGGCGGGGAT 44398 29 100.0 33 ............................. CGGATCGTGTGCGTGCCGTCACTGCGGCCTGGC 44460 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 44521 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 44582 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 44643 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 44704 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 44765 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44826 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44887 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 44948 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45009 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45070 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45131 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45192 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60737-61681 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPE01000013.1 Escherichia coli strain MOD1-EC5917 MOD1-EC5917_13_length_125461_cov_29.2284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 60737 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 60798 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 60859 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 60920 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 60981 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 61042 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 61103 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 61164 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 61225 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 61286 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 61347 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 61409 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 61470 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 61531 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 61592 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 61653 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //