Array 1 25143-25752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVRP01000042.1 Staphylococcus epidermidis strain 165_SEPI 825_46243_1201144_222_,...,199+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 25143 36 100.0 36 .................................... CATTGAGTTTTTTATAACCAACTACATAAAAATCAG 25215 36 100.0 36 .................................... CCTTTATATTTTTGCATTGCTTCTAATAATCCCATG 25287 36 100.0 36 .................................... AATATAAGCGTAAAAAGTATTGTCTTTATATTGACT 25359 36 100.0 36 .................................... TTCTGAAAGCCAACAATTATTTTAAATTCTTTTCGC 25431 36 100.0 37 .................................... CTTTAAGGTAACTGAAATTGATAACACTCTTCCAGAT 25504 36 100.0 34 .................................... GGTGCCAACCTGTGCCCCCTAAATCATTTCTGTA 25574 36 100.0 37 .................................... TGTTCGTCTATGCCGTCATAATGTAAATCACTTACTA 25647 36 97.2 35 ...................................T ACATCGTCAGCCATGTGGTTTGGTAAGTTTACAAG 25718 35 86.1 0 ..........T.................G.-...GT | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 98.1 36 GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Left flank : GCAAAAATGGATTTTCGTTTCTTATGATATGCAATTAATCCTCCAAAAAATTAAGCATAATGAAAATTGTAAGTTTCATGCGGTTCCTCATCTTAATTTCTATGAAATGAGGTACGACCTGAGGAGTAGGTTTACTGAGAAATAATGTATTTACGCTGGGGCTTCAAGTCCAATTTAGTTTTTACATTTCATACTTGCACATTATCAAACAAAATCAATTATTAAAATAGATGTTTAAGTATTTTTCTTCTTGTAGTGAGGGAACGTCTAATTTTTATTCGAAATATAAAAAGAAATGAAAGGTTAAATTAATATTAATTTTATTAAATGAATAGGCTAAACCATCTTAAATGTAGTATACTATTAATATAAATGTAATTATTATAAAATTTGTCAAAAAAAGTGACATATCCTATAATCTTGTACTAGTGATTGTCATATTTTTTGACAGCAAAAATGATGCTTGAAATATAGTTGTGATGGCATTTGTTAAAGTATCT # Right flank : TGTAAATCTAACAACACTCTAAAAAATTGTAGATTTTGAATAAAATACGCATTGATTAATTTCTAGGGGATGGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGCGAAGGAAAATAGCATTAAATTTAGAAATGTCATAGATAAAAGTGAAAAATTTTATTTGTTTGAAGAAATTGAAGCTATTATTTTTGATCATTATAAAAGCTATTTTTCACATAAATTGGTAATTAAATGTATAGAAAATGATATTGCGATTATATTTTGTGACAAAAAGCATTCTCCAGTTACACAGCTCATTTCTTCATATGGCATGGTTAATCGTCTTAAAAGAATTCAAAGTCAATTTCAGTTATCGGGAAGAACAAAAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTTTTAACCAAACACGATGTCTTGAAAATAATTTACATAATGAAAATGTTAAGCTGATGTTAGGTTTTGCAAAAGAAGTGAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 11912-12376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVRP01000051.1 Staphylococcus epidermidis strain 165_SEPI 834_13117_337127_292+,...,153_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11912 37 100.0 34 ..................................... ATGCAACAGCAGAAGCCTATCGTAATGGATTGGT 11983 37 100.0 32 ..................................... CAAGCAATAAAAATGGTTCAAGACCATATTAT 12052 37 100.0 35 ..................................... ATAGGAATAGTAGAAGTTAACAACGTTATATATTT 12124 37 100.0 35 ..................................... CCAGTTTCTTGTATTTCTTTGCTAAATAAACCACC 12196 37 97.3 34 ....................................G ATAAATATCTATAATTAACAATTTTCTTATTGAA 12267 37 100.0 36 ..................................... CCAACTTACTATTTCCTTCTTGAAAAGTAAACTTCA 12340 37 86.5 0 AT..........C....G..................C | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 97.7 34 GATCGATAACTATCCCGAAGAACAGGGGATGAGAACT # Left flank : TTTTTTAGTAAAACCACTAATAAGGGGACAGAAAGCTTATGAACACAAAAATACTTGAGATTGGCTTCTGTCCTTTAGATTTTACAATCGATTTATAGACCAAATAAAATTTAACTATTTTGTTTATTCAAATTCAGAAGAGCTATCCTCGTGTGATGTGACTGATCTTTCTAAACCGTATAGAAATTTTTCAGATTATTGTTAATAAGCAATCTCTTAAAAAATAAAAATTAAGGAAATTTATATTACTATTATCTAGGTACTAATTTTATCTTTTCTTTTAAATTAAAAAGGAAGAAAAAGTTAAATTTTTATTAAGTTATACACACGATTAATTATTAGCGTGTTAAATGTAGTATACTGTTAATATAAGAAAAGTCATCATAATATTTGTCAAAAAAAGTGACATTCTATATAGTAGTGTGTCGTTAGTTGTCACATTTTTTGACAGCCAAAATAATAATTGAACCCTAATGGTTATGCTATTTAGTGAAGCATCG # Right flank : CTCATCTTGGTGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAACCCTCGTAGAATAGAGAACAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTTTTGCAATTAATCAACATTCAATTTTTAAATAAACAGAAACAAAAATAACTTTCATACAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAGTTTGATGCAGTGTGGTCCAATTTCGAGAGCTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAATCAAGATATAAAAACAAATAGTTTTACCATAACTACATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGCATTAGTATTATGAAAGAGCAAGATTATCATTTAGAAAATGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTATCCCGAAGAACAGGGGATGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //