Array 1 374561-370007 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWS01000004.1 Bombiscardovia coagulans strain DSM 22924 Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 374560 29 100.0 32 ............................. ACTAAAGTACGACACGCCGCCCTGTATCTGAC 374499 29 100.0 33 ............................. GCCAGCGTTTGCTTGTTGAAGCCAGTAGGTAGT 374437 29 96.6 32 ............................T GGTTCCTCTGTTATCGAGCTAATCCTGTTTTC 374376 29 100.0 32 ............................. ATTTCCACCCCATCCGGGTACTCGACCGTGAG 374315 29 96.6 32 ............................T TTATGGCCAACGAAGCTAGCGACAGCTACAAC 374254 29 100.0 32 ............................. CGAGGACAATGGCAAGCAAAACATCGACTACA 374193 29 96.6 32 ............................T ATCGGTACACGCTCTGACTTGTCGACATCAGC 374132 29 96.6 32 ............................T ATATCGGCGCAAAGTCCTATCACTCACACCAA 374071 29 96.6 32 ............................T CGCCTGCGCTTTAGGCGGGATGAAGACCGTGC 374010 29 100.0 32 ............................. CCTCCAGACACCCTCTGGAGACTCTCTTGCCT 373949 29 100.0 32 ............................. CGTAGAATGTATTCACAGAATGCTTGGGACCC 373888 29 100.0 32 ............................. TATGCGAACGATAAAGCTGCATAGAAAGTAAA 373827 29 100.0 32 ............................. CCGTACGTAAATCGCTGTAAAATCCTGTCATC 373766 29 100.0 32 ............................. TGATTGTGATCATATTGTTCCAGGTGATGACA 373705 29 100.0 32 ............................. CAGATCCTGCAAAGCGCGGTAGCTGATCGTAT 373644 29 100.0 32 ............................. GTCTTTCTTTTGGTGTCTTAGGCTCCGTCTTC 373583 29 100.0 32 ............................. TTTCACTATTGCCACCTCTACCATCCCTCACG 373522 29 100.0 32 ............................. AAAAGCAATCGTAAAAACTGTCAGCCAAAATT 373461 29 100.0 32 ............................. GCCGAATCGTGCTTAATAACACCTTGCGGGCC 373400 29 96.6 32 ............................T AGCTCACTCAGAGATTCCGGAATTGGATTTAC 373339 29 100.0 32 ............................. TAATATCACCATGTACTTCAGGATGTGGTAGA 373278 29 96.6 35 ............................T TAGTGTTCCTCCCGTTTCCGTGATGTCCATAAGTG 373214 29 89.7 32 T.CC......................... ATCGCTAAAGGCAGGTACGCTGATGATGTTTT 373153 29 96.6 32 ............................T GGTACGCAATTTATCACTAAATATTGGCGTAT 373092 29 100.0 32 ............................. TCTTCAAAGGGCGTATTCCACGAGTAGCTATA 373031 29 96.6 32 ............................A AGTCGAAAAGCTACCTTGTAAAAGCTACCTGT 372970 29 96.6 32 ............................T GTTCTTTTTAATTTTTAGTAGTTTCTTGTATT 372909 29 96.6 32 ............................T AGACGTGTCCCCACTGAATGCCTTTGGTCCCT 372848 29 96.6 32 ............................T GTACGTTCCGCAAATGCGATTGACAAGAGCAT 372787 29 96.6 32 ............................T CATGGCGGGATATTGTGCCCCGCCAGCGCGTG 372726 29 100.0 32 ............................. AAGGAGTATGGGAAGCCTATGATCCCGGTATT 372665 29 100.0 32 ............................. CGTTTCGCCATTTGACGTTGGGCTTGCCGTGG 372604 29 96.6 32 ............................T TTACGCCGATAGGCTTAAAGGATGTGGGATTA 372543 29 100.0 33 ............................. ACTGAAGTACGACACGCCGCCCTGTATCTGACA 372481 29 96.6 32 ............................T GGAGTGCAGCAGCGAAAGCATCTGCACGCTCA 372420 29 100.0 32 ............................. AGCCACTTGTTGTTCACTTTGTGATCCGTGGG 372359 29 96.6 32 ............................T GGCAGGCTGATGGCTGGGCTGTAGAGGATTCT 372298 29 96.6 32 ............................T TTAGAAGAATCAATAGTACCATCTACTACCGA 372237 29 100.0 32 ............................. CTAAAAGCGCCGATAATGCCGACACTCACCAG 372176 29 96.6 33 ............................G TGAGCTCCATGCCGTCACTACTAGTGATATGCG 372114 29 100.0 33 ............................. AAAAGCGAGGTCAGCGTGCTGTATGGTGCCACG 372052 29 100.0 32 ............................. GAAAGCATGATAGCGACTATGCTCGATAAAAG 371991 29 96.6 33 ............................T GAGACGAAAGCGACAGATTATAGCGATTTAAAA 371929 29 100.0 32 ............................. GTCACATACACCAACGAAAAATCACCATCCTA 371868 29 96.6 33 ............................T CCATTTTGCTAGCGCTCTTCTACCTCCCCATGA 371806 29 96.6 32 ............................G TCTAAATTGTAATTATCTGTATGCTCATAGGT 371745 29 100.0 32 ............................. CTATCGGCGTAAATTACACATATGATAGAGTA 371684 29 100.0 32 ............................. TCCGAATCATGCTTGATGATACCTTGGGGACC 371623 29 100.0 32 ............................. ACGCTACTAGGCTGTTACTAAAACCTGCAATC 371562 29 100.0 32 ............................. TACGGAGGAAGCGCAATGAGCAGGATGGGGCA 371501 29 100.0 32 ............................. ATCGCGAAACGTATTATACACCTGATACTCTC 371440 29 100.0 32 ............................. CGCAGTAGTATAGTCGGCCGCTACATTAGCTC 371379 29 100.0 32 ............................. TGCTTGCTGTGAGTGCAAGGATTCACTGAATC 371318 29 100.0 32 ............................. CGATATGTGGAAAGCAATCGAAAACACAACTT 371257 29 100.0 32 ............................. AGGCAGCACGCCCGAGCCGATATAAGGACGTG 371196 29 96.6 32 ............................T CAGACTCAATCTTAATCAGCCCTTCACAAATC 371135 29 93.1 32 .....T......................T AGCGGCATCACGCCCTCATTGATACTCATTAA 371074 29 100.0 32 ............................. TGTTTACTTACTTGTATGCTCAGTCTCACTGA 371013 29 96.6 32 .....T....................... TCGACAAGCTCAATCATCGCCACTAGACCGAG 370952 29 96.6 32 ............................T AGTCCGAATCTGCCTAAAACCTCGTAGCCATC 370891 29 96.6 32 ............................T AGATGCTGCCATCTGGTTAATTTTTGCCTTGT 370830 29 96.6 32 ............................T CCATGCCTTCGTCTCCGGGGATTCAGCCGAAG 370769 29 100.0 32 ............................. CAGGGAGAGAACGAGGCAGACCGACTGGAAAT 370708 29 96.6 32 ............................T CCTTGAGCTGCTTATCGGCTGTCTTGAAAGCA 370647 29 100.0 32 ............................. ATCTTTAGTATGAGCTATTATTGCCTCACCTC 370586 29 96.6 32 ............................G GACCCAACACCGCCACGAGGTAGCGTTAAAGA 370525 29 100.0 32 ............................. GTATGCATCGCAACGATTTTGTCACTCATACG 370464 29 100.0 33 ............................. TGCAAAACAGGAATGCCACTGCTCATCAGCTGA 370402 29 96.6 32 ............................T GGTTCGACGAAGAAATGTCCCTTATTAGGTAT 370341 29 100.0 32 ............................. TGTCCTAGTCAGGGACGGTACGCGATTATCGG 370280 29 100.0 32 ............................. TACGGTGGGACTTGTTGTCGTAATACCAGAAG 370219 29 100.0 32 ............................. GTTGCAGGGCAATATGTGGTGACGCTCCACAC 370158 29 96.6 32 ............................G CGGACAGGCTCACAGACGAGCTTACCAATCGC 370097 29 96.6 33 ............................T TGGTGCGGTACATTTACGTTGGCAAATTTTTTA 370035 29 86.2 0 ............T..........AG...T | ========== ====== ====== ====== ============================= =================================== ================== 75 29 98.2 32 GTGTTCCCCGTGCATGCGGGGATGATCCC # Left flank : CTAGAAGGGCAAACGAACAAGCACTTCGACTGCATGGTGATGTCGCTGCTCTTATTCGACAAGGTGACAGCGCAGGCGCTCGTAGTGCAATGGAAAGTATCGTTGATGAATCCGAACAGGCTATCGAAGTCATGGCTTGTGCAAATGCCTGCAATGATGGTGACTCTCGGTAAGTGTTGATCATCAGTCTCGCTGTGAGTCTGCTTTTCTAATGATTTCTCAATGGTACCAATGGGCACATGACTGTTCCGGATAATTAAGTGAAGCAAGAGGTGTTAATTCGCTATGATTGCATGCGGGAGAATACAATAGTAAGGCTGTACTCTATGGCAGAGTGTCATTTTTTGGGGGAAGGGGGGTGAAGCACTGAGGTGAGCCCGTGTAATATGCGCATGAGTCTATGAACAAATAGAATAAAAATATGTACAGATACAGAGCAAACTAATAAAATTACGCTACAATGCTATAATTAAACCGCTTTATTACAGTGTTTTCTAAGT # Right flank : TGTCCGGTCGATGCTCCTAGGTGTGCTTGTGTTCTCCTCACCTGCGGACGGGGGCAAGTGATGTGCTCGCTGATTTGGCTTTGGCAATAGCTGGGTACAAATTGCGCACAAGTCTTGCTCGGACTCGCTTCGGGAAGAGATAAAACAGAACCCCTATTCCTTTGTGGGAGTAGGGGTTTGATCTGGGGTGGCTAACGCGGCTCGAACGCGCGACCTCCTGAACCACAATCAGGTGCTCTACCGACTGAGCTATAGCCACCATGCGCAGTGCATGTGATATACGCTGCAACAGATGACTACTTTACACTAACCTCTGACTAAGCGCGCCGATAGGATGAAATTAGCTGACAGGTACATGTTTTGGGCTATTACAAGTTGTTCTGTGTTTGAAAGGAAGAAAGCGTTTGAATATGACTTGGGCGTCGTCTGAGATGGTAAACATGGGATCGTTATGCTCAGCTGTATTCTCGAGGCTGGCCCAAAACATCTTTACGGTTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 628179-627723 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWS01000004.1 Bombiscardovia coagulans strain DSM 22924 Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 628178 29 100.0 32 ............................. TTCATCTACAACAACTCTTTCTTTTTTTTCTG 628117 29 100.0 32 ............................. TTGGACGAGAGCCAAGTAGCAAAAGGTCACCA 628056 29 100.0 32 ............................. CCCTTAGACTGCGCAAATTTCCAACCCTTTAT 627995 29 100.0 32 ............................. GGGGTATTTTGGTGGGTCTTGGGATATCAGGA 627934 29 100.0 32 ............................. AACCAGCTACAAGCACTATTATTATTGACGCT 627873 29 96.6 32 ............................T AGCTGTTGCACATGGTGTCAGCATCCAAGCTA 627812 29 96.6 32 ............................T TTGTACTTAATGGAATATTTCCTTTAGGTGAA 627751 29 75.9 0 ..............T.T......TG.GTT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTGTTCCCCGCACCCGCGGGGATGATCCC # Left flank : AAGATGACATTCTCTCCTTGCTGGGGTGAGGTAGGTTAGCATTTTTGTGCACATGAAATATTTGGCTTTGACTGTTGCAGACAGTAGAAACTTTTAGACGCGCCATGCAAGATTGATGCGGAAGGGGAGGGGACTGTGTTATGCTTTTTAGCGAGCACTTGCTTCGCGGATGTAGCTCAATGGTAGAGCCTCAGTCTTCCAAACTGATTACGCGGGTTCGATTCCCGTCATCCGCTCCACATATGTAATTCTGTTCGTCTCAGTCATACTGTTTTTATTGTTGGATGGAGTATGTAATAGCAGTTATGGGTAGTCTTCTGTGTTTTTGTGTAGTAATAAGCACCCCTGTGTTGATATGAGATTGAGAATTACATATGTTTTTGTAGGTTTATACATCTTTGTAAGCTGAGATAAATGGATATTTGTACCATATTGATCAAACTGATAAAAAATCGTTTAAACGAAATTCATGATCCGCGGTATTATTAACTTTGTTAAGT # Right flank : TGCGCATTTGCTTACAGTTAGCAAATGCGCAAACTTTTATAATAAAACAACCTACTGGTATTGCGTGTTTTGACTCTTAAAGAGGGCGCTCTAGTCGTTTCTGGTATCATGCTAAGTCTCCGTCATTAGTAGAGCAACGATCGGTATTTTCGGTGATCGATTGAAGATAGAACTGGTCACTAGCGTCTACTCTATACTCGGCCTGTCTAGTTGGGTGCTCACGATTTCGTCATTACCCCCATATCGGCTTCAGTAGCTGGTTTCCATGCAGATATAAGCGCAGATTATGCTGCTGATAGCTTTGCCTTGGTTGGTGCGTTAATCATTCAGTCAGCGAGACTGTAGAGAAATTTCCAATATCCCAACCATGTCTGGCGTCTTTTCTGTGCCTTTATCGACCAATATCAACGGTACTATATTCGACAAATTCTGTATATACCTATATACCATTTATTAACCTTATCTCCTAGGTGTTGACTGCAATGACTTCAGTTCTTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGATCCC # Alternate repeat : GTGTTCCCCGCACCCGCGGGGATGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //