Array 1 31634-30096 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065718.1 Salmonella enterica strain FDAARGOS_878 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31633 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 31572 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 31511 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 31450 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 31389 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31327 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31266 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31205 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31144 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31083 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31022 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 30961 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 30900 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30839 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30778 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30717 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30656 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30594 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30491 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30430 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30369 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30308 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30247 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30186 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30125 29 96.6 0 A............................ | A [30098] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49746-47766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065718.1 Salmonella enterica strain FDAARGOS_878 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49745 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 49684 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 49623 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 49562 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 49501 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 49440 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 49379 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 49318 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 49257 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 49196 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 49135 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 49074 28 93.1 32 ..A.....-.................... GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 49014 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 48953 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 48892 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 48831 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 48770 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48709 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48648 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 48587 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 48526 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 48465 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 48404 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 48343 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 48281 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 48220 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 48159 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 48098 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 48037 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 47976 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 47915 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 47854 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 47793 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //