Array 1 289906-289413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000001.1 Clostridioides difficile strain CDI-09 20161320_1_length_482120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 289905 29 96.6 38 ................T............ AAGAATGTCTAAAGAATTACCACCATCCTTCTCGATAT 289838 29 100.0 37 ............................. GACACAAAATCTTTATGTTGTAGGCGGTGGAGCATGT 289772 29 100.0 36 ............................. GGTCCAAATACTTTTGATTGCAGTGGGTTCACTCAA 289707 29 100.0 38 ............................. ATGTCAGTCACTAAAGTAAAATATTGTTGTTCTGCCAA 289640 29 100.0 38 ............................. AAAGAAATTATGACTAGCTTTAGCTTTGAAACATACGA 289573 29 100.0 37 ............................. GTAAAAAGAGAATGCAAATCCCAAGGCAAACTAAAAG 289507 29 100.0 37 ............................. GATAGAATCGGAGAATGGCTGTCTAATACATCAAAAA 289441 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTATTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTAGG # Right flank : ACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAATAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTTAACTCTCTTAAACCATTTTCATATCCTTTAGTAGATACTTTTGTTATTTTTTAATCTTTAGTAACTTATTCTTGAGTGAATCTCTTATTTTTTCTAAGCTATTTCAAGCTTCTCAAAAAATTCTATATTTATATTCATCACATATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 26725-26435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000022.1 Clostridioides difficile strain CDI-09 20161320_22_length_62914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 26724 29 100.0 36 ............................. TGGTATTAGAAAGTTTGCTGATAGAATCTAGCATAC 26659 29 100.0 36 ............................. TATAGTTGTAACCGCTGATTTTAAGGAATTAAACCC 26594 29 96.6 37 ............................G CCAAGTTGAAAATTTAGAATCTATGTCTTTACACCAT 26528 29 89.7 37 .................CA.........G ATGGGAGCATTAACTTTAGCATTTGGAGCATTAGCAG 26462 28 86.2 0 ...............T....AC.-..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 94.5 37 GTATTATATTAACTAAGTGGTATGTAAAT # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAGGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTCGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAGTGAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAAAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGGATTTAAAATGCTCAATTTATTTTGGG # Right flank : TTTGAACAAATACAGAAAACACTTATTTAAATAGTAAGTGTTTTTGTTGTGCTTAAATTTAATCAGTTATGTGAAATTATTATGGAATAATATTACAAATAATTAATGAAAAAATTATTAATATATTATATAATTGAACTAGAAAATACATTTAATTTATAGTGAAGGAGAATGTTATGGCATTATTTGGGGATAAAGTTGATAAAGAAGATAAAAAGAAATTAAAAGAGCAAGAAGAAATACAAAAATTCATGAATAAGTATCAATTACAAGATTTAAATGAAAAAGATTTAACTATTTTAAGAAGAATAGCAGATGATTTATTTGCAACTGGACTTATAAAAACAGGATTAGCATTGAGTTTTACAAAAATAGAAGAACAAACTAAAATAAATTATCTTAGTGCTTTAGTTGAGCAAAACTGGATGATAATTAGACAATTATCTCAATTGAATAGCAATATAGAAAAACTTGTAGAAGATAAAAAATAATGGACTGAA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 53895-53343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000002.1 Clostridioides difficile strain CDI-09 20161320_2_length_393340, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 53894 29 100.0 37 ............................. CAAAATGTCTAAAGAATTACCACCATCTTTTTCGATA 53828 29 100.0 37 ............................. TAGTCTTATTTTCAGCGCAGCCATTTACTACAAGTTT 53762 29 100.0 37 ............................. CGATATGCATCTGTATAAGTTTGATGTATTTCATCAA 53696 29 100.0 36 ............................. GTTGAATTTATGGATGATGCAATGGCAGCTCTTAGA 53631 29 100.0 36 ............................. AAAATAATTATATTCTTTTCTAACCTGTCAAGAAGC 53566 29 96.6 36 ...............A............. TTTTTTGAGGATGAAAAAGAGGAAACAAGAACAGCA 53501 29 96.6 37 ...............A............. GTTTATATGTTAAAAAGAAGTGTGGAAGAAGTCGAAA 53435 29 96.6 36 ...............A............. TCTTCTTTTGAGATAAACAGTAAAGTAATAGTAAAT 53370 28 75.9 0 AA......C...........AC.-....A | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 96.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGATTGCAGGTGAAAAGAAGAATTATCATGTAGTATATAAAATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGTGTGAGAATTTACTTGATATGGATAGAATAGAACTTATTAAAGAACTTGAAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGGTAGGAAAAAAGAAAAGAAAGAGAATAAATAATATAAATAAAGCACTTGGATATTATGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGAGCGATTTTTATGTTTAAGTATGGTTTAACAATTGGAATACAAGGTATTGAGAGTATACGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGTAAATACTCAATTTATTTTGGG # Right flank : TTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATGTGATGATAATGAAAAAAGTAATAAATAGGAAAAATATGTAAGAGTTATATGTTATAATATTCATGCAAGGAAAAAATGATTGAAAAAGTGTAAGAGTAGTTATTTCCATATTAAACGCCAAATTCCATAGTGGAAGGAGGTGGAGCGATATGGTAATAGATTTTTTATTAAGTGTACTAGCTGGTGTTGTATCAGCTTTTATGTATGAGAAAATAAAAAACTACTCAAACGCCAATAAGAGTAGTTTAAAAAAGTAATTAATTTTTAATCTGAATTGGAAATAACTGCTCTTGTATAAAGTAAATCATTATTTCCTTGCTTTTATTATAGCATAAATTAGAAAAAATATGCAAATAAATAAACAATGCTTATTAAATTTAATAGGCATTGTTTTTATTTTAATATTAAATAAGGAAGTGAATATATGATGAGAAAACTGCAG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 56511-55695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000002.1 Clostridioides difficile strain CDI-09 20161320_2_length_393340, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 56510 29 79.3 36 GAG..........A.T............T GGAGTAAACATAAATACTTTTGGTCATGGTTACACA 56445 29 96.6 36 G............................ TTCATTGTTGGCACTATATGAGTACCATTTTTACTA 56380 29 100.0 37 ............................. ACTAAAACATATTTAGTACTACCTTTTTTCTTAACTC 56314 29 96.6 37 ...............T............. TCTTCAACTTCTTGTGCAACTTTTTTAGCTGCTTCTA 56248 29 96.6 37 ...............T............. GTTTTTATTGAAGTTTTTACTGTATTAGAATAAGCTA 56182 29 93.1 36 G..............T............. AAAAATACAATAAAAATATCTATAAATATGTTATTA 56117 29 89.7 37 G..............T............T TTAAATGATGCAGCAAAAGGTGCAAAAGACACAGCAG 56051 29 100.0 36 ............................. GCTGGAATTAATGCGACTACAGTAGAAGAAAAGAAA 55986 29 100.0 37 ............................. TTGTAAACATATAAGTTGCCTTGAATCATATAAGCAT 55920 29 100.0 37 ............................. GTCGCAACAAAAGCATGATAAGATTTGTTTCCACCAA 55854 29 86.2 37 ................A...C......GT CAGCATTCTAAGTGGGTGGTAAAACACCATATACCTC 55788 29 89.7 37 G............A.T............. TTTATAAATTTATCTATAAAGGTTCGAAATACCTTAC 55722 28 79.3 0 G..............T....-..TC...A | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 92.9 37 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTCAGATGGCTGTTTGTGAAATCATTAAAAAGATAAAATTAGAAGAAAATGAAGTTAAGGAAATTTGGGAGACAAATGGTTCTTGGACTGGTACTGTAAATAAGTATACACAAAGTGTAATAGATAAGGTTAAGTGCTGGATAGATGATAATAATAAGCCTGCTAAGATACAGGGTGAAAAGAAGAATTATCATGTGGTTTATAAGATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTCTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAAATGAGAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGTTAGGAAATCAGAAGAGAAAGAGAATAAATAACATAGATAAAGCACTTGGATATTACATAGTTTCAAGTGCTTTGTTTGGTATAAAATGGTATAATAGAAGTAA # Right flank : TTAAATAAAGAAAAGGAAGCACTTACAAACATGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAACTAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCAATAATCATACAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAATGGAAACTGCTATGAATAAAAGAATTACAGTTAGATTGGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATGGTATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAGGAATAAAAAATAAGGGTCACTCTCCCCGACCAAAGATTGAGTAACCCCTATTGATGTATACTACAAATATACTAATGTTAGTATACATCATTCCTTAAAAAAATTCAAACTTAAGGAGTGTAATATTATGAAAAATTTAATAGTAAAAGAGTTCAATGGAAG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : TTTTATATTAACTATGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 59505-59148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000002.1 Clostridioides difficile strain CDI-09 20161320_2_length_393340, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 59504 29 96.6 37 A............................ CTTAAAGCTGTTGTAGATTTTGTAAGTAATGGATTTT 59438 29 100.0 37 ............................. GGTGCTTATATAAACTTTATCTCAGCTAAGAGGGCAA 59372 29 93.1 37 ...............T.......A..... ATTGCAATAACTGGGAAAGATATAGCAGAAGCATTAA 59306 29 100.0 36 ............................. ACTAGTGATTGTGTCTGAGCACCATTTAAAGTTTTA 59241 29 100.0 36 ............................. AAAAGAGCTGCAACAGCTATGAGAAAATATGGAATA 59176 29 89.7 0 A......................A....T | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : GAAGCTAAGAAAAAAGAGGAAATAGAGAAAAAATCCTCAGAGGAGAACAAAGGAAACATGGAAACGAAAAAACAAACATTAACTGGTGAAGAATTAAAGAAAAAAGTTGATTCTATAATTCCAGCAGAGTATAAAGGAAATTACTACACAAATGATGTACTAGATACAGATGGTAGCTATGTACTTAGTTTACAAGTTCAAAATGCAAGTTTTGACAACGAAAGTAGTTGTAAGGCATTTACTAAAGACTTGATTAACAAGTTAAAAGAATTCAGAATAGATTCAGCAGAAATTTATTTCGTGGGTTCAAGCGGTCAAACAACATATCAAATTAACATAGATGACTTTTTGAAAGTTCAAGATAATATTGATAGCATAGACGATATGGAGTTTTTCTCTTTTAAAGATTTTAAAAATTAGAAACAAAATAGAGACATTTGCTTAAATAGCATGTGTCTCTATTTTGTCAAATTATGTTATAATAGTACTTAAGAAATATA # Right flank : ACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTTAAAATTAAATAGAAAAAGGAAGCACTTACTTTTTGGTATGTGCTTTTGTTTTGTCTTATATTGGAAATTTGTCTAAAGATAAATTATAATGATTATATAGATATTTATTAGGGGGATTATACTATGGGATTATTCAAAAAAAAGGAAAAAGAAAAAGGAATTTGTATGATTTGTGGTAATGAAGGAAATGCTTTAAAAACTGTAGATAATGAGTTTTTGTGTGATGAATGTTTTGAAAAATGTAGAGGCGAAATAGCTGTTCTTGGAAAAGGATTAAAAAAACTGACAAGTAAGGAAGTTATGAATGCTGTAGAGCTATGTAGAGATAGTTTTGGAAATTTTGTTAAAAACACATTAATACAAATTGTATATTTAGGAGGTCATCCTTTATTTAATAGAGAAGAGATGATTTGTCTCTTAATTAGAAGTGACAAGATAGTTGTTAAAGCTTTTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 94824-94072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000002.1 Clostridioides difficile strain CDI-09 20161320_2_length_393340, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 94823 29 100.0 37 ............................. CTTTCAGAAAAGGGCAATAAGGAATCTTTAAGTGTAG 94757 29 100.0 37 ............................. ACAAAAGAGTGGACTATAGATGTTGTAAACTTCTTAA 94691 29 100.0 37 ............................. AACATCCTTCCAACTCCGTCACTATTTGCAGCGTCAG 94625 29 100.0 37 ............................. ATGTTTGGCGACATTGTGGGAATAGTAGTTCTTTTTT 94559 29 100.0 37 ............................. GTTCGACTTGATTCAAATTAAGTTTAACTCTTTCTTC 94493 29 100.0 38 ............................. ATTTTTCAAACAGCTTTTGGAGCTGTATCTTCGATTGT 94426 29 100.0 36 ............................. ATACTTTCAGACTGAACTTCCTTATCGCCTTCTAGG 94361 29 100.0 37 ............................. TTTTTCAGTTCTGAATCAGTTGGAGATGCTGTTGCAA 94295 29 100.0 37 ............................. TTACTTGACTGGAAGCTTCTGACTCTTGTATATGTTT 94229 29 100.0 35 ............................. AAAGTACTGTTTGCTGATTCGGTAGCGTCTTCTGA 94165 29 100.0 36 ............................. ATTGCTGCTTCTGCCAATTCGGGCATAGTAGCAGGG 94100 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : AAGCACTGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAGATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAAATGAAGAATTAGTATCATATCATGATGTAAACCCAAATACAGAAGCAGATAAGCATTATAATAGAGATGTTGATGACGTTAATATTATATTTGTTCCATCAGAAAATAATCCTTTTGATAATGATGTAGATGGAATAAATTAAATATTTATTATAAGGAGTTAAACTATAAATTGATATAAATATTTAAAAATAATGTATTTATGATATAATAAAACTATGGAAATTTTGCAGTGAGCGATATTTATGATAAAATGGGGCTTAGCAGTTGAAATATAAGGTATTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTATATGCGTAGGCATTGAAAATACTCAACTTATTTTGGG # Right flank : AATTTTTAAATAATAGAAATAGACTAGTATTTAGCTAGTCTATTTTTTTCTTTTCTTCTTTTTAATTCTTCCATTATAAATATAGCTGCTATAACTAAATAGTTAACTTCTAAACCAATTGCTAGGTCAACTATTGTAGTAACAGTTACATTTTTATAATTACCTTTTTCTAATTTAGATATATAACTTTTGTTATAATTAATTTTCTCTGCTAACTCTAATTGTGTTAAATGTCTCATTTTTCTCAGTTGTCTTAACATAAATTTAAATCACCTTTTAATATATTTTTTAGTAAATTCAGATAATTATATTATGTGCATTTTTGTGGGGAAAAGTTTCCTATTAGTCGATTTTTTTGTTGGAAATTTGTGCTAAAATATAAGTAAGAAATAACTCTAGCTAGATAGAGAAAAAATAGAAAATTGTAGATTTTGATAAGCCTTGCAATTAAATTTATATAAGTGTGAGAACTTTATTTCCAAAGATGGGAGGATGATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 113919-112896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000002.1 Clostridioides difficile strain CDI-09 20161320_2_length_393340, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 113918 29 100.0 37 ............................. ATGATAGAAGGTGAAACAGACCCGGATACCATATTGG 113852 29 100.0 37 ............................. TAAGCAAAAAAAGGAAGAACAATATCTCGAAAAAGTA 113786 29 100.0 37 ............................. TCATATTTTAAACTGTTGTCTTGTTTAATATATGGTA 113720 29 100.0 38 ............................. AAAAAATTTACTAATTCAGTATAATATTTATTATCTGA 113653 29 100.0 40 ............................. TAGATGATATTTCTCTATTTTCGTGTCTATATGATGCAAT 113584 29 100.0 36 ............................. CTGATAGAATTTATGACTTTGAAAGAGGCAAATTTG 113519 29 100.0 38 ............................. ATTGAAAAAACTGGCTTTCAGCTTGAAATTTTGTGAAC 113452 29 100.0 38 ............................. ACAGCTTCCTTGGTATTATCTGATATACTTTTTCCAAA 113385 29 100.0 37 ............................. TTGATTTCGTATTTACCTGCATTTGAAAAAGGATATT 113319 29 100.0 38 ............................. TCATTTGTATTCCAAAGATGTACAAGTCCAGCTACTAG 113252 29 100.0 37 ............................. TTATTAATTTTTCCGCTTCCGCTTGAAGTTTTGACTC 113186 29 100.0 37 ............................. TCTTTATCAATAGAGATTCCGTTATCTGAATTATATC 113120 29 100.0 35 ............................. ACGTGTAGAGTAGACAATACAGGTTTTTGGGTAGA 113056 29 100.0 36 ............................. TCTAGTTTTTTCTCTTTAGAAAAAATAAAAACAACT 112991 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 112924 29 89.7 0 ...................T...A....T | ========== ====== ====== ====== ============================= ======================================== ================== 16 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : GTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 250924-248983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000004.1 Clostridioides difficile strain CDI-09 20161320_4_length_277880, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 250923 29 100.0 38 ............................. AAGTAGTGATGACTCATTTCTTGCTAAAGAAACTATAC 250856 29 100.0 37 ............................. CTATCTGAAGAATTTAACTTTGTTAAAAAACACCCTT 250790 29 100.0 36 ............................. GTTTTAGAAGAATCTAAATTATCAGATTTAGACAAC 250725 29 100.0 37 ............................. AGTTTAGAAGGAAACTTCTTTAAAGGTGTAGAGACTA 250659 29 100.0 37 ............................. CCTAGTTCTTTATTTGTTATTAAAAGTAATTGATTTT 250593 29 100.0 36 ............................. TATTTATACCTACTTAGTTTTAGCAGCTGACGCTTT 250528 29 100.0 39 ............................. ATTATTATCGTCCAACATCATATTTAAAAAATTTTGAAG 250460 29 100.0 40 ............................. TGGTAGGAATAAGCGTTAGTTTGGCGACTGGGTACTTATT 250391 29 100.0 37 ............................. AAAAAAGAAGATAGGGACATGTATAAAAAGACAGTAG 250325 29 100.0 38 ............................. GTCTTAATAAATCTTTTCTTATAGAGTTTTTTAAATTA 250258 29 100.0 37 ............................. ACAGGCAAAGAAGGATTTTCAACTTTAGGAACTGTAA 250192 29 100.0 37 ............................. TATAAATAAATAAACAAAAAACAAAAACAATTATTTT 250126 29 100.0 36 ............................. ATAATTAACAGCACAAAAAGTAGAAATCGGAAGTAA 250061 29 100.0 37 ............................. CAACCAAGCAGTCGCAGAGTTTTCTTTCATATTAAAA 249995 29 100.0 38 ............................. AAGTCACACAACCCCCAAGCATTTAAAATTAGTTTAAG 249928 29 100.0 36 ............................. GTATATGTAATTTTTATAACTGATGGAGATAATTTT 249863 29 100.0 36 ............................. CGAAAATGGACTGTTTTATCTTTAGGAGTAGGTGAA 249798 29 100.0 36 ............................. AAGTAGATAAAATAAGTTTAATAGGAATAAGCCAAG 249733 29 100.0 35 ............................. ATTGCAAGTTTATTGTCATTAAATACTTGTTTCGC 249669 29 100.0 37 ............................. TTAATAGGCAAATCATAAGGAGGATTATTCTCTCCAA 249603 29 100.0 37 ............................. GAAGATATTTCTGTAAAAATCAATAAAAGATTAAAAG 249537 29 100.0 38 ............................. AGATATTGTTTAAATTCTCTGACTAGGAAAATTGATGG 249470 29 100.0 38 ............................. GAGGAATATCTTTAACAGTAATCAAATTTTTAACCCTA 249403 29 100.0 37 ............................. GCGATTAATTGGTCAATCTTAATATTTTGTTTCTCAT 249337 29 100.0 39 ............................. AAGACTGTCTTAAATAAAAAGAAAACAGAGCCACAACAG 249269 29 100.0 34 ............................. GTTCATCACTAGCAAAATCAGCTACTACTCTACC 249206 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 249140 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 249075 29 79.3 35 ............TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 249011 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================== ================== 30 29 98.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATAGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 149262-148709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000006.1 Clostridioides difficile strain CDI-09 20161320_6_length_203193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 149261 29 100.0 35 ............................. CCTATTGGGTTTGCTTGGAAGTTTCCTTACAACTT 149197 29 100.0 36 ............................. AGAGAAATTTTATTCAAAAGTATAACTTCATCAGTA 149132 29 100.0 37 ............................. ACAGCTCCTAGACCACTTAATTGCGTTATTAATTCTT 149066 29 100.0 38 ............................. TCATGAAATAGGAGAACAGGATTACGATAACATGGACG 148999 29 100.0 36 ............................. TATCATAATCAACTTCAAAAAGAGCAGCTCTACCTT 148934 29 100.0 37 ............................. CTATTGTAGTTGTACCTTTACCTCTCATTTTTGCTTT 148868 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 148802 29 82.8 36 .C.............CA..A...A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 148737 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 97.3 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAAGAGATGTCCTTTAAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTGCACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 45937-45245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQW010000019.1 Clostridioides difficile strain CDI-09 20161320_19_length_69621, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 45936 29 100.0 37 ............................. CATCAATTTTCCTCCGCACGAAAAAATCAGAAGGGGA 45870 29 100.0 37 ............................. ACTGCAGATATCGAGTTATAACTTGAAGGAACATTTA 45804 29 100.0 38 ............................. CAGACATCAACACTAAAAGCAAACGGTTTATTTACAAC 45737 29 100.0 37 ............................. TGTATATCATTAATACTAGTATCCATTTTTTGTAATA 45671 29 100.0 37 ............................. TATAAAGAGCTTGGGGTAGCAAAAGGTGTTACATATG 45605 29 100.0 38 ............................. GAAAAAATAATTATTACTGTTTCATCAAATGCAACAAG 45538 29 100.0 36 ............................. ACTGATGTTTGAAATGTTATATCCTGCACAACTCCT 45473 29 100.0 37 ............................. TATTATCTATAATCTGAGAAGGTGTATAGTCTAAATT 45407 29 100.0 38 ............................. TTATTTATCTTGTACATATTCTTTAGTGCAACTGCTAC 45340 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 45273 29 93.1 0 ........C..............A..... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.4 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACTATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGATCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //