Array 1 428825-429948 **** Predicted by CRISPRDetect 2.4 *** >NZ_VULW01000002.1 Bifidobacterium tsurumiense strain BSM-380-WT-2B seq2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 428825 36 100.0 28 .................................... TGTCACCATTCTTGATGTTCGAGAACCT 428889 36 100.0 28 .................................... CTGGTATCCGTCACCGCAGATGGCATTA 428953 36 100.0 28 .................................... TTAAAAATTTCTGACACCCGAAAAGGAA 429017 36 100.0 28 .................................... CGATATGCACCTTGCCGTCATCGTCAGC 429081 36 100.0 28 .................................... GCCATGCTCACGCCCAACAGTGACCTGA 429145 36 100.0 28 .................................... AATCAAGAGCAGTATCAGTCTGTTGCGT 429209 36 100.0 28 .................................... AGGACACCGCGGTCAACGACGACCACCG 429273 36 100.0 28 .................................... ATTCCACGCAAGCAAAGCGGCAGAAAAG 429337 36 100.0 28 .................................... CAGAGGTAAATCATGCGGAGCATCCACA 429401 36 100.0 28 .................................... ATGTTTGCCGCATCCCCAGTGTCACCCT 429465 36 100.0 28 .................................... GATAAAGAACAACGCTAAAGCGGCAGAT 429529 36 100.0 28 .................................... GCAAAGCCCTTCCCGAGCATTTCAGCAC 429593 36 100.0 28 .................................... CCGGGCCGCGGCGGTCATGGACGGGCGG 429657 36 100.0 28 .................................... CGTGCGCGCCCTGCAAGCCCGACTCAAC 429721 36 100.0 28 .................................... GACATCAAACCCATAGCCGCCGAGCTAT 429785 36 100.0 28 .................................... CGACTATCAGACGGGCGAGGTGAACGCG 429849 36 100.0 28 .................................... CTCGTTTTTTACTCGAGGTCCAAAAAGT 429913 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 18 36 100.0 29 GCTGTGAATTAGCTTTCTACCCTCTTGATAAGATTG # Left flank : CCAACGATGATCACGAATACGTAATCACTCGAATCGGAGTCAGACATTTCCGAAATTCCAACAAGTACCACGATAATTGTCAGTATTACGCCGACCCACGCCAATACTTTTGCTGTCGCAATATACCCAAAGCCATACCTTGAATCCACATTCCTAAGCATCGGTGGTTGAGTTTGCATTTTCTGATACTGTGGGTTCCCTTGATTTTGCGATGCTTGATTTATATTCTGTGACATGGCTTCCCTCCCTGCCTTTATATAGTCACATGCTCTTAAGGCTAGTGCCATCGAACCATTTCTCATAATATCTGTAGATAAGTCTCGAATATTGATCCATTTCAAATAGGAGTAAATACGACACCATCGTTCTGATTCCACGTTTTAGCTGATTCTCGTTTCCTGGAGTGATGTAAAGCGCACATCATCAGCTAACAAGAAGTAGCACCTATCATGTATTCGGCGTAATTGTTAAGATAGCTACAATGCAAGCCACCCGAACAG # Right flank : GATCAATCTCGCCAAGAGGGTAGATTTCAACGTTTTCAGGTTGTTTTGCGTTTAAAAAAGCAGCAAAGTGTCAGGTGTTTCATCTTCTAGTTGAGGCCTTAAATTTGCAAATCGGAGAGATTTTGACCATTGCTTATCGGTTATGTGCAAAATCCTCACTTTTCCATTAGGTGGAAGATTTTCTTTGACTTTCAAAACAGTCGTACGGTTCCCATCTGCCGTTGGTGAGTAACGGGCATACACGGAAAACTGAATCATGCAATATCCCATATCCTGGAGCAAATGCCTGAACACAGCAGCATCATGACGTTCTCGCTTGGTCAAAACAGGAAGATCGAACATAACAAGACACCACATTCCACCACTATCCTCGTCGATTTTCATGGTTAATCCTTGACATATTGTGGAATTTCAATTTTGTCTAGCTTTCGCTCCACATACAGTGCATACTGCTGGCTGAAATCATTGATTTTGCTCGGAATCGTTAATCCTTCGCCATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGAATTAGCTTTCTACCCTCTTGATAAGATTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 498800-498042 **** Predicted by CRISPRDetect 2.4 *** >NZ_VULW01000001.1 Bifidobacterium tsurumiense strain BSM-380-WT-2B seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 498799 36 100.0 36 .................................... TGGGCGCTCAAAGCCCTCGACGAGGAGCAATGCGAG 498727 36 100.0 36 .................................... GATCCAAGGCCTCCGGCCGACCGGTCACAAAGAACG 498655 36 100.0 38 .................................... CTCTGCCTGACTGGATTGCCTTCGCGTTCATGCCGTGG 498581 36 100.0 37 .................................... CCAACAGGCGGCGACCTGGTCAGCGGCATTCCGCAAC 498508 36 100.0 35 .................................... CAGATGCCCGAACCGTGGAACCGGAAAGCACAACG 498437 36 100.0 36 .................................... ACGGCCCACTGGCCGGTGAACCGGTCGAATGCGGGG 498365 36 100.0 36 .................................... AGCGGGTGCCCCTGCTTGTCCTTCACGGTAGCCAGC 498293 36 100.0 38 .................................... CTGACCGCGAACAGGTTCGGCCGTCCATATCCGCTCGG 498219 36 97.2 35 ............................A....... CCAACGAATACGGAGCAACACGAAAGGACATGACC 498148 36 94.4 35 ...............G............A....... AACCGATTCGGACGCGATGACGGACCGGTCGGAGT 498077 36 86.1 0 ..........C..AGT............A....... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 98.0 36 ATTGCCAGAGTTATAAGCTCTGGCCTTCGTTGAGGA # Left flank : TACTTGATTGCGTATGACATCGTCGATGACAACAGACGAAGTCATGTGGCAAAAGCATTGCAATCATATGGAGAGCGGTTGCAATACAGCGTATTTTTGCTTGAAGTCAGGCCGGCACAGATGATTCGAGTTCGCCAGCAATTGGAGTCTGAAATGGATCCGCAAGATAATTCGATTATTGTGTGTCCGCTCGGAAACAGCGCTCGTGCTGCTCAAGAGATTCAGTTTTTAGGAAGACATAGCTACGAGGATGTGGCTATTCCTACAGTGATTTAGCGCATAATGCGCTGGTTGTTTGATAATTCAAGAGTGGATTTTACATGGTTATGTGGTTGCGAGAGGTTCATCAGGTGGGAGATGGTGCCTCAAGCACTCGCGGTTGGAATTCTGCGGATTGTTGAGCGTGTTTGTGTTTGTGGGCCTTTGTGAATGGCGCTTTCGGAGAGCCGCTCGCGAAATAGGTGATTTATGCAGTCGCTCGAGTCCTTTATTATGGGTCT # Right flank : GCGTTGAACGTCAATTGTCTTGATCCCATTTGGAAAATCTCCTGCATCGTGAACCAGCGATTGAGACGCAATTTAACTCAAAAATCGTTCATTCATGGCAGGATATAATCCATGCTTAGCATTCGCTGGTTTGCGGAATCGGCCACGTCGTTCCCACCTCGCCACTGCTATAGTCAAAGACCATGAAGCTCCTGCACGCCGAAAGACTGACGCTCAGGCCGTGGCGCGAGGATGATGCGCCGACCTTGTTCGCTTTGGGGTCTGAGCCGAGCATTGGTCTCAATGCAGGGTGGTCTCCTATCCGGGATATTGAAAATGCTCGGGATGTCATTGAATCGGTATTGAGCAATGACTTCACATATGCAATGACCCTTCGTGAATCAGATGAACTTGTCGGGTGCATTGCGCTGAAACCAGTAGCCGAATCGGTGCTCTCTCTCGTCCATAAAGGTCAGATTGCGGGATTGGAAACCGATGAGTTGGACAACTTAGATCAAACC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCAGAGTTATAAGCTCTGGCCTTCGTTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //