Array 1 256432-254325 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTK01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 30 NODE_2_length_474905_cov_20.5105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 256431 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 256370 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 256309 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 256248 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 256186 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 256125 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 256064 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 256003 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 255942 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 255881 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 255820 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 255759 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 255698 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 255637 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 255576 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 255515 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 255453 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 255392 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 255330 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 255269 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 255208 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 255147 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 255086 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 255025 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 254964 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 254903 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 254842 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 254781 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 254720 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 254659 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 254598 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 254537 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 254476 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 254415 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 254354 29 89.7 0 A...........TC............... | A [254327] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 273816-272690 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTK01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 30 NODE_2_length_474905_cov_20.5105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273815 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 273754 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 273693 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 273632 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 273571 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 273510 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 273449 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 273388 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 273327 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 273266 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 273205 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 273144 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 273083 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 273022 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 272961 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 272900 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 272839 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 272778 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 272717 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //