Array 1 1416-1871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATNH010000412.1 Streptomyces sp. NEAU-H3 scaffold416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1416 29 100.0 32 ............................. GAACGCCCCCCGCTCGTCCGCGCGGAGCAACG 1477 29 96.6 32 ..........................G.. GCGCGAGACCCCCCTCCCGACCCACGGGGGGG 1538 29 89.7 32 ...G..........T......T....... TCGTCCTTCGCCGCGCAGGTGGGCGAGCCGTG 1599 29 93.1 32 ....G.................G...... TGGTCCTTCTCCGCGCAGGTGGGCGAGCCGGG 1660 29 100.0 32 ............................. TGGTCCTTCTCCGCGCAGGTGGGCGAGCCGTG 1721 29 96.6 32 .....................C....... GGGCGGAGGACGGGGGCCGCCTGCTTGCTCCC 1782 29 96.6 32 .G........................... GGGTCGGCTTTCCCCCGGCGGATCACCGCTCG 1843 29 93.1 0 ........................A..T. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : GAGCGGCGGGCGTGACACTCCTGGCCGAGGCGGCCCGCCTGGTCCGCGAGGCGGGCTTCGAGATCGGCAACGTCTCGATCCAGGTCATCGGCGTCCGCCCCAAGATCGGCAAGCGGCGCACGGAAGCCCAACAGGCCCTGTCGGACGCGGTCGGAGCCCCGGTCTCGGTCTCCGGAACAACAACGGACGGCCTCGGCCTCACGGGCCGCGCGGAGGGCCTGGCGGGCCTGGCGACGGCGGTGGTGTGGCAGGCGGCGTGAGGGGTGCGCGGGTCCGGGGAGGCCCGACGACGAATCGACACTTCGTACGGACCGCTCCCGACGCCTCGCGTCCCACGCCCTCGCGGACGCCGCGCGGCGGACCGGCTCGCTGGACTGGTTGCGGGGGCGCGGGGGAAGGGTGACGGCGGGAGAGCTATGCGCGGGCTGCCGGATATGACCGAGTGTCCACTCCTTGCCGATACACCGGGCGCCACGTGACAAAACAGCAGGTAACGGAGC # Right flank : CCCTGCCGTCAACGACCACGTGCGGGGAATCCCGCCCGCCCTCACCGCCCCGCCGCAGGACCTGCTGCCCGGCCCGGGCGGGGGCTCTCCGTGGGGTTCGGCGCGTGCCGGTTTCTTTTCGGGTGCCGTCCCCGCTCCCCGCCCCTTCTTCCCCCCGCCGCCCGGCCCCAGCACCGCCCCGCGCCGTCTACCCTGGACCCCGTGACTATTCGGCTGTACGACACCCGCGCCCGGCAGATCCGTGACTTCTTCCCGCTCGTGCCGGGCTGTGTCTCGATCTACCTCTGTGGTGCGACCGTGCAGGGCGCTCCGCACATCGGGCACATCCGGTCCGGGCTCGATTTCGACATCATGCGGCGGTGGTTCACCTACCGCGGCTACGAGGTCGTTTTCGTGCGGAACGTGACCGACATCGACGACAAGATCATCAACAAGTCCGCCGAGCAGGGTCGCCCCTGGTGGGCGATCGGCTACGAGAACGAGCGGGCGTTCAACGCCGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1622-956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATNH010000335.1 Streptomyces sp. NEAU-H3 scaffold338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1621 30 100.0 31 .............................. GGCGCGCGAGCGTGAGCGCTTCGCCGGGTGC 1560 30 96.7 31 .............................C CGTGGGCAGTGTGCACCAGGGCCCGCCGCAG 1499 30 93.3 31 ............................GA CGAGGTAGGAGTTTTCGTCCGGCATGCGGGA 1438 30 100.0 31 .............................. GGCGCGCGAGCGTGAGCGCTTCGCCGGGTGC 1377 30 93.3 31 ....C........................C CGTGGGCAATGTGCACCAGGGCCCGCCGCAG 1316 30 96.7 31 .............................G GCACCGAGGCCGAGAAGGGCTGGAACGTCTG 1255 30 96.7 31 .............................C CGTCGGCAATGTGCACCAGGGCCCGCCGCAG 1194 30 93.3 31 ............................GA CGACGTAGGGGATTTCGTCCGGCATGCGGAA 1133 30 100.0 31 .............................. CTCGTCCCGCCGCCAGGCGTCGATCTGGTCC 1071 30 93.3 1 ...........A.................C T Deletion [1041] 1043 30 76.7 28 GC.GCGTT...................... CGACGCTCACGATGACCTCCTGGCGTTC 985 30 93.3 0 ............................TC | ========== ====== ====== ====== ============================== =============================== ================== 12 30 94.4 28 CTGCTCCCCGCGCGTGCGGGGATGGACCCT # Left flank : GACATCGCGGTCATGCGGGCCGCCGTCGTCGCCCTGGAGTGCGCGGACGAGCCGGTGAGCAAGGCGCGGGCGGACCTGGAGTTCCACGAGGCCATCGCCGTCGCGGCCGGGAATCCCGTACTGCGGATCATGCTCTCGTCCATCAGCGGGATGATGTTCGAGATGATGCTGCGCTCGAATTCGGACCCGAGCATCGCCGAGCCGGGCGTCCCGCACCACCCGGAGATCTTCGAGGCCATCGAGCGCCGCGACGCGGAGCTGGCGGTCGAACGGATGCGGGCGCACCTGCGGTTGGGACTGCGGACGTACGGGCGGGACCTGGACGTACAGGTGGACGTGATGGCGAAGCAGCATATTGAGATGTTGTTGGGGGAGGGGCGAGGGTGAGGGGGAACGAAGGCCGGGCTGCCATGGGGTGTATGTCGGATGTTGTAGATATGCCGGAATTCGCAATTGTTGCGCGCACGGCTCCGGGGCGGGGGTAAACCCCCAGGTCGGAA # Right flank : AACCTGTCAGCACTGCGTGACGAGCCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCGCGTGCGGGGATGGACCCAGCGCGCACTCTGAGAGGGCGCCATGAGCTACCTGCTCCCCGCGCGTGCGGGGATGGGCCCCGCCCGCCGTGCCCGACACCGGACTCGGCGACCTGCTCCCCCCGCGTGCGGGGATGGACCCCGCGCGCACTCTGAGACGGCGCCATGAGCTACCCGCTCCCCGCGCGTGCGGGGATGGGCCCCGCCCGCCGTGCTCGACACCGGACTCGGCAACCTGCTCCCCGCGCGT # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5827-5492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATNH010000335.1 Streptomyces sp. NEAU-H3 scaffold338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5826 30 96.7 31 .............................A AGAGGCGCCCGGCCTCCCGGCCGCGGAGGAA 5765 30 100.0 31 .............................. GAGTTCATAGTGCCGTACGTTCCCAACCCCT 5704 30 100.0 31 .............................. GAGTTCATAGTGCCATACGTTCCCAACCCCT 5643 30 100.0 31 .............................. CGCCGGCAAGGAGCCCGACCGCGCCCAGGTC 5582 30 93.3 31 ..............C..............T CGGCGAGCCCGCGCGGCCCGCGCTCGCCGCG 5521 30 86.7 0 ...........AT.C..............A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.1 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : TCCGGGCCGTACGGTACGGGGGGCGCGGACGGGGCTCTGCGAGGCGCGCGGCGGGGCCCACCGACCCCCCGTACCCCGGCCCCTGCCCCACCGTGCTCCCGGGGATGCCCACCGAGCGCCCCCTGTGCCGGGATTCCGGGGCGGGGGAGGGGGTGGGGTGGGTTGGGTGCGGTGGCGGTGGGGGTCACCGTACGGGGAAGGCGGGGGGCGCGTCGTGGGGCCGAGGGTTCCGGCGCTCCGGGGCGCGATCCGCTGCGTGGCGCGTGTCGTGGGGCCGAGAGTATCGGCGCCCCAGGGTGCGATCCGCTGCGTGGCGGCCCCGGGGCTGGGCCCTGTGGGCGGGGTGGCCGTGCGGGAAGGGGGCGTGGTTAGGCGGGGCGGGCGCTAGGCTGCGGCGGTCCGAAGAACTCGGGTACCGAACCATCTTGTCCGAAAAGTCCGATTCTCCACTTCTTGCTGAATCGACGCCATCTCGAAGGCAAAAGGGCTGCTCACGCAGA # Right flank : CTGCGGCACGGCGCCGCAGGGCAGGTCTACGCCGATCCGGGCCGTTTCAGCAGCAGTTCGTCCCCAGCGCGGAAGCGCTCGATGCCACCCTCCTCCCACGTCACCACCACGAACAGGCCACCCATCGCTCCGATGTCTGTCTTCGCCGTCTTCACCGTGCGCCACCGCCCCTCGTAGCCGATCCGGTCTCCCGGGCCGATGAGAGCGGCCACCCTGGTCGGCGTCACCGCTCCGGCTCCTCGACCCGCACGATCCGCTCCAGTGGTACGTCCCACTCGATGCCGCCGCCCGGCGGGCGCAGGAACGCCTGGCTGGCGACCAACCGGTTCTCCCTCTTGGTGCGCTGCTCCAGGACCCAGGTCAGGTATCCCGTGCGCTCCGAGATCTTGTCCCTCACCAGCGTGCCGGCCGGGTACGGCAGCGGTCCTTCGCACAGCATCGTTTCCCCGTTGCCGCTCACTCCCGACCGCCCTTGCGCAGAGCGTCGGCCAGCCGCGCGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //