Array 1 810834-810387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051652.1 Pectobacterium carotovorum strain WPP14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 810833 28 100.0 32 ............................ CAATTGACGCTGGTTACCTCTGTCCGCGCGAT 810773 28 100.0 32 ............................ AATTGCGGTAACTCGCCGTGAGGTCAGCGGCA 810713 28 100.0 32 ............................ GATATCCGTGTCTTTGAACTTATAGTCATCAC 810653 28 100.0 32 ............................ TTTGCGTAATCCTCAGGGGTGTAGTTCACCTG 810593 28 100.0 32 ............................ TCACCCTCTCAGTTACTTCGCCCTCTAAAAGC 810533 28 89.3 32 A..........T.....T.......... ACACGGTCACGAATAGTGATCCGCATGATTAA 810473 28 92.9 32 ...........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 810413 27 78.6 0 ...........TGC........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCCACTCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGTTGGTTTCTGCGTGTACAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAACCCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGTTGACGGAAGCAGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGTTATTAATTTTTAATTGCAGTTGGCCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAATCCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATATCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCAAGCGGCTGCCGCCGTGGTTGCGATGTTCGCACAAGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATTGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACTGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAGCCCGACGTTTATCTGACGCAGTCCGGTGACCTGTGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 819826-820694 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051652.1 Pectobacterium carotovorum strain WPP14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 819826 28 100.0 32 ............................ TAGACCGCAATACTTGGCCGCATGACATCGCA 819886 28 100.0 33 ............................ AGATACCATTTCGCGTCAGCTTCATCTACGCAT 819947 28 100.0 32 ............................ TTGTCAAGTGGCACTTGTGCAGCACTGACGGC 820007 28 100.0 32 ............................ TCATCGGGCACTGGTTCGCACATTTCCAAGGC 820067 28 100.0 32 ............................ GCTGAGTGATGAAGAACGGTCGGATCTCCTCC 820127 28 100.0 32 ............................ ATCGCCAGGGACCAGCATTCGCGGGGAGGCCA 820187 28 100.0 32 ............................ AGCCAATGGCAGTGCCGCTTGAATATTTGTCC 820247 28 100.0 32 ............................ AAGATTGCTGGCGCTGCTGCGGGTGGTGCTAT 820307 28 100.0 32 ............................ AGAGCGGAGGAAGTCAAATTGAGACTTGAAAG 820367 28 100.0 32 ............................ TACGCGCAGAAGATATTCAGAGAGTTTAAACA 820427 28 100.0 32 ............................ TCCCCGATGTGCTTGCGCCACTCAAGGTGCTG 820487 28 100.0 32 ............................ GCAGCCGCGTCCTGTGCATCGACGATCAACAC 820547 28 100.0 32 ............................ TGAACTCAATCAGGTCTTGGTGTGGCCTATCC 820607 28 100.0 32 ............................ AATAGATGGATCCCGATTCGCGGGTCAATTGC 820667 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAGATTCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCTCTGAGCTGAAAAAAAAGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGACAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCATAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACTGATCCTGCTTCATCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 828263-827575 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051652.1 Pectobacterium carotovorum strain WPP14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 828262 28 100.0 32 ............................ TTCCATGCACCGTGCTGCAATGGGCGGCTGTT 828202 28 100.0 32 ............................ TGTGTTTAAGGCGGTTCCTGTCGCAAGCCAGC 828142 28 100.0 32 ............................ GTATCCACGCTGCATGGCGCGTTACTGCGTCG 828082 28 100.0 32 ............................ TCCGCGTAATGTTTGTGGCTCCGTACACTGTG 828022 28 100.0 32 ............................ TGATTCGTGCCGCGTATTGCGGCAGGTTCGAC 827962 28 96.4 32 .................T.......... TGGACGGGGAATGTCGTGTGCCGGAAGGTGAA 827902 28 100.0 32 ............................ GTTAACGGACATCACGTATCCGCTTTCTCTCC 827842 28 100.0 32 ............................ GCGTGTGCCAGGTCAACCGCGTCTGATATCCA 827782 28 100.0 32 ............................ CGTTATCCCATCCGCGAATAAATTCGCCGCGC 827722 28 100.0 32 ............................ CACGCGCCCTGATTCAGGTCGGCCTTCTGCGG 827662 28 96.4 32 ............G............... CCGATTTCAGCAATTGCGGCGTCTGTGGCCGG 827602 28 82.1 0 ...A.......A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAACGAATGCCAATTGGGTTTGATCGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTATTACCGTTTTTAAAAACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGGTATTAATCACTCGACTGTATATCCATAGCATATGCAGATACCTGACATAGGCTTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACTGT # Right flank : ATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGGCTGCCCAATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTAATTGAAGTACGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGGCTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4399286-4398403 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051652.1 Pectobacterium carotovorum strain WPP14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4399285 29 100.0 32 ............................. CGGAATACGGCAGTCAGTTACTTTTATTGGTC 4399224 29 100.0 32 ............................. CAACCCTGCTTCTTGGGTCAATGATCTCGACA 4399163 29 100.0 32 ............................. GATTGAGTAATTGGAATAGTCGGTATCTGTCA 4399102 29 100.0 32 ............................. TTTCTTACCGGGGGATCGTCAGGGATGCTTGC 4399041 29 100.0 32 ............................. TTGTGACGAATAACGGCAGCAACCCAGAAAAT 4398980 29 100.0 32 ............................. CTGATCGCCCGACTGAGAAAATCGCCGCGCAA 4398919 29 100.0 32 ............................. AGTGTAATCACTATAAACAAACAGGAATAGGC 4398858 29 100.0 32 ............................. TGACATGGTACGGCGAGAAATACGACTCTGAC 4398797 29 100.0 32 ............................. AATACCTGAGAGCCATGCAGTCCGGTAAATAT 4398736 29 100.0 32 ............................. CTGGCACCAGCATTGTTACCCGACGCCTGCAT 4398675 29 100.0 32 ............................. GCTATTCTTTGCCCTTTCCACTGTAATGGGCA 4398614 29 100.0 32 ............................. CGCGGATGATTAGCCCATTTCGCGACGAATGC 4398553 29 100.0 32 ............................. ACATGGAGTCCTGCACATCAATGGCCTGATCT 4398492 29 100.0 32 ............................. AATCGTTGGATTGAAGGCGTGCTTTGCGGCGC 4398431 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAATTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //