Array 1 1-587 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL882862.1 Klebsiella sp. MS 92-3 Scaffold1845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... CCGGTTACGGGGATGACTGCAATTCGCTCCTG 60 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 121 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 182 29 96.6 7 ............................N NNNNNNN Deletion [218] 218 29 93.1 32 NN........................... GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 279 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 340 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 401 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 462 29 96.6 7 ............................N NNNNNNN Deletion [498] 498 29 93.1 32 NN........................... GCACCAACGTTTACGGTGCGGTGGTGAAACAA 559 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.5 27 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TGCCGGACGTTGTACCTGTGAGTTAATTCTTCGTGTTCCCCGCGCCAGCGGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NNGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46690-49503 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL882852.1 Klebsiella sp. MS 92-3 Scaffold1572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46690 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 46749 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 46810 29 96.6 32 .....................G....... TAATATTGATAAATTCGATGAAGTAACCGGAA 46871 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 46932 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 46993 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 47054 29 93.1 6 ...........................NN NNNNNN Deletion [47089] 47089 29 93.1 32 NN........................... GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 47150 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 47211 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 47272 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 47333 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 47394 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 47455 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 47516 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 47577 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 47638 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 47699 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 47760 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 47821 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 47882 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 47943 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 48004 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 48065 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 48126 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 48187 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 48248 29 93.1 7 ...........................NN NNNNNNN Deletion [48284] 48284 29 96.6 32 N............................ CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 48345 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 48406 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 48467 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 48528 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 48589 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 48650 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 48711 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 48772 29 93.1 6 ...........................NN NNNNNN Deletion [48807] 48807 29 93.1 32 NN........................... GAATATAAAACCAGATTCCATATAGCCCTGTG 48868 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 48929 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 48990 29 100.0 32 ............................. GGTATGAGCGTTTTCCGGTGGATTCTGATGTG 49051 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 49112 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 49173 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 49234 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 49295 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 49356 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 49417 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 49478 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 48 29 98.5 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : | # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-7] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //