Array 1 373896-373333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGRN010000002.1 Staphylococcus epidermidis strain R5973 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 373895 36 100.0 30 .................................... GATAAGACGTTTACTCATAACAGAAACAGC 373829 36 100.0 30 .................................... TCTTGCCTCTTTGAACAGACCAGAATACAC 373763 36 100.0 30 .................................... TGTTTATTCAGTTTTGTGATTTATATAATA 373697 36 100.0 30 .................................... AAATCGCTCATGCGCATCACTACACAGAGG 373631 36 100.0 30 .................................... GTCTCTCGGACGTTGGTTCGGTTGGCTAGG 373565 36 100.0 30 .................................... ATATGAACACATTAAGCGGTTTAGATAAAA 373499 36 100.0 30 .................................... TTATCTTCATCATTTGGACAAGCCCACATG 373433 36 100.0 30 .................................... ATAAACCAGTCATACCTCTTGCCCAGTATA 373367 35 94.4 0 ................-..................C | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.4 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Left flank : TTTTAGGTATAAGGTATATTGTTTATTCAGTTTTGTGATTTATATAAT # Right flank : CCTTTCTTGAATGTCATTTCTAAGTTGTTTGCAACAGTTTATGGTTATTTAGAGAGCATAGTAATGAAAAATGGGATTTAGTACCAAAAGCAGGACGCTCACCATATGATAAATATAATGACGAGGAAACTTTTTATGCGTGGAAACGACAGGCTATGATATTTCTGAAAGAATCATACAATGATTGGGATATGTTAACGATTGCACAATATCATGGGTTAGCGACGAGGCTATTAGATTGGAGTTTCAATCCATTAGTAGCAGCTTATTTCGCTGTGAAAGACTTTGAGGATTGTGATGCTGTTATTTATGCTTATTTGAAAAAATCAGATATTAATGTCAAGGAAGTACATCCAATTGAGAGTAAGGGAATAAAGAAAGTGAAACCAAATGGACTAGCAACAAGAGTAGTAAGACAAAGTGGTATTTTCACAATTCATGAACAACCAACTGCGTCTATTGAAGATAACTTATCGAAAAAAGAAAAATTAAATAAAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 416-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGRN010000015.1 Staphylococcus epidermidis strain R5973 contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 415 36 100.0 30 .................................... AGTGGACGCAAAAAGGCCGTTTATTCATCT 349 36 100.0 30 .................................... TATCTTTTATGTTGGAACCAAATTCAACTG 283 36 100.0 30 .................................... TTGTAAAAGCTAAAAATGAGGAAGAACTGT 217 36 100.0 30 .................................... CAACCGAAATAGAACAAGCTATAAAAAATA 151 36 100.0 30 .................................... GAAAAATTCATTCACTCAATGGGAAATCAA 85 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Left flank : ATTATCAAGCAAAAGAAAAATCATTTGTAATCTATTTATATCCAGAAGCTGGTCTTAGCATTAAAGAACAAATAAGATTTAGGAAAATACTAAATAACTTACCTGTTCCGGTCATTGTTTTAACCGAATCACCCCGTTTTTTATCTGAAAGTATTAAGGGACTAAATTATTTTATTAATAATATTCAAATGATTACAGAATCTTTTTTTGAAGATAGCTATTGGAATGCGCCAATTAATGTGGAAAAAGAACGGATTAAAGAGAGGTTTGAGTATTTATTTGTAAAATATTGTTCAGTTTTAGAAATAAAACCGATTATCTCTAACTACTTGCTTGCGGATATTATTGTTTTTAATGATATTGATCTTTATATCATTGTTTCATTTTTAAAACATTGTAATTTAGAATATCAATTAGATATCGATAAAACAAAAATTTCATTAGCGTTATCAACTTATCTATTTTCTTAATTATAATTCAAGGTTATAATTGTGCTAGAG # Right flank : TTGTTTATTCAGTTTTGTGATTTATATAATAGTTTTAGTACTCTGTAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 7752-7506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGRN010000015.1 Staphylococcus epidermidis strain R5973 contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 7751 30 100.0 41 .............................. CTTCTAAGACGCGATATGATTCTAATTGGTCTTCATTCGAT 7680 30 100.0 44 .............................. GATATACTCCTTTACCATGTATTAATTCTGGACCACTATTCGAT C [7675] 7605 30 100.0 39 .............................. CATATTCGATCGTGTATATCAAAACTTTATGCATTCGAT 7536 30 96.7 0 ..........................G... | T [7508] ========== ====== ====== ====== ============================== ============================================ ================== 4 30 99.2 42 AACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : ATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAAATTCGAT # Right flank : CATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAATCCTCGTAGAATAGAGAAAAAGTATTAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 17450-16482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGRN010000015.1 Staphylococcus epidermidis strain R5973 contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 17449 36 100.0 37 .................................... ATAATCGCCGCCGTTTTCTTCTAATAAATCATTATAT 17376 36 100.0 36 .................................... TATACTATTTACATAATTTTTTATGTGTCTGTCTAC 17304 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 17231 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 17161 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 17088 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 17017 36 100.0 38 .................................... TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC 16943 36 100.0 37 .................................... TAGACCATTTACCTCATTATATTTATAGTCTTTATTA 16870 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 16799 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 16727 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 16656 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 16587 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 16516 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.0 36 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : GTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //