Array 1 485781-487638 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFJ01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain 3158 3158_3_length_714819_cov_19.2742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 485781 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 485842 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 485903 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 485964 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 486025 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 486086 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 486147 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 486208 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 486269 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 486330 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 486391 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 486452 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 486513 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 486574 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 486635 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 486696 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 486757 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 486818 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 486879 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 486940 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 487001 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 487062 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 487123 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 487184 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 487245 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 487306 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 487367 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 487428 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 487489 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 487550 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 487611 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 504320-505998 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFJ01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain 3158 3158_3_length_714819_cov_19.2742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504320 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 504381 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 504442 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 504503 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 504564 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 504625 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 504686 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 504747 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 504808 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 504869 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 504930 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 504991 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 505052 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 505113 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 505174 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 505235 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 505296 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 505358 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 505420 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 505481 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 505542 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 505603 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 505664 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 505725 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 505786 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 505847 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 505908 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 505969 29 100.0 0 ............................. | A [505996] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //