Array 1 204124-202998 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807441.1 Aerococcus sp. HMSC072A12 Scaffold399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 204123 28 100.0 33 ............................ CAGAATTCTTCTAGCAAAATTTGGAGTCAAAGG 204062 28 100.0 33 ............................ TGCTTAGGGGAATAGACCTGAACCAAGAGTACG 204001 28 100.0 33 ............................ CTTTGTCAGTAAGACGGCGGATAGCTATCGTCC 203940 28 100.0 33 ............................ CTGGTTTCTCGTTGGTTCTTTATACAAAAGAGC 203879 28 100.0 33 ............................ CTGAGTTTTGTTCAGCCTTCTCCACAGCAGTTG 203818 28 100.0 33 ............................ CCGGAAGCTTGCACAATGGCTGAAAGAAAAAGG 203757 28 100.0 33 ............................ CCATGTCATACGATCATCCTCTCGCCTTCTTTG 203696 28 100.0 33 ............................ TTAATTTTATTTAGTTTTGTAGTTAAAAGCTCC 203635 28 100.0 33 ............................ TCAAGGCGGCTATCTGATGATAGGTCTGCCGAG 203574 28 100.0 33 ............................ TCGAAAATCACTTCTTGTCTTCTACTCATTTTC 203513 28 100.0 33 ............................ CTTGGAGTTAAACTTCAAGAACTCACTCGGAAA 203452 28 100.0 33 ............................ CCGCCAAAGTTCCGGTCAAAGCTCATCCCACAG 203391 28 100.0 33 ............................ CATTTCTGGCCCTGTTTCAGTATGGACAATCCA 203330 28 100.0 33 ............................ TATAAGGAGGAGCCCATGACAGAAATCATCTGC 203269 28 100.0 33 ............................ TGACAGACTTTGACCCGCTTATAGACACAGTGG 203208 28 100.0 33 ............................ CTACGTCCATTCTTACTTCGAGTCTCCAGAAGC 203147 28 85.7 33 ...........GC.A.....A....... TACTAAGTTTTCTTTGGCATATCCTTGTGTGAT 203086 28 92.9 33 ...........G..A............. CATCAAAGTAGCGCGCCACTTCTTCGCTGTGGG 203025 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.7 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : GAGCCAAATAAAGATAAAATTATCGAAATAGCAGCTATGAAGATAAAGGGACAAGAGAAAGAAGTCTTTCATCATTTAATAGCTGAGCGGACAGTTCCCATGCAGATTCAAAAACTAACGGGGATTAGCCAGCGAAAAATAGATGAAGAGGGGATAGATGAGAATGAAGTGTTAATAGATCTTCTTCAATTTATTGAAAATCAGGTTATCGTTGGATACAATATTAATTTTGACATTAGCTTTATTAATAAGCAGCTGAAAAAGATGGGTCAAGAAAATTTATCTAATCCTATCTTAGATTTAAGGACTATTGTAAAAAAAGAAAATATGTTCTTAAAAAATTATCAATTACAGACAGTCCTACTGAGTTATGGAATTGATAAAAAAGTTCCCCATCGAGCTTTGGGGGATGTCGAATTAATAGCAGAGCTAATTTCAAAAGTGAATAAATTTCCGACTTACTTGAAAAAGAAAGCCCGGTAATATAGGGATCCTTTAGT # Right flank : TGATTTAGGATTAGGATATTATATACTATGGAAAAGAGGTGTAAAAATGAATGATTTTATTTCTGATAAAGTTGTAGCTGAAAGATTAAAAGCTTTAAGAGAAGAAAAAGGCTACACGCAAAAAGATCTAGCTAATTTAATTAGTGCAAATTATGAAACAGTTCGGGGCTGGGATTATGGTAAGTCTTTGCCTAAGCATGAAATGCTGGCAAGATTAGCAAAGCTATATAATGTAAGTATAGATTACATACTGGGCCAAACTAATACTAAAGAAAGATATAAATAAAAAAGCCCATCTAATCGATGGACTTACTTATCATTAGTAACCAGCGTCATTAAATAGTCGGTCATGCTCAAGCCGTTCTTTTTGGCCTGGTCTTGTATCAGCTGCTTTTCTTGTGCGGTAAGTCCTAGCTTTAAAGACTTATCACGCTTGCGACCAGTAGCGGGGCGACCTCTTGGGCGTTTCTTTTCTTGGGGCATTCTTGTCACTTCTTTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 74853-74520 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807450.1 Aerococcus sp. HMSC072A12 Scaffold667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 74852 28 100.0 33 ............................ CTTAAGAAGGAGAAATAGCGATGAGAAAACTAG 74791 28 100.0 33 ............................ TGTGCGGACTATCGTAGAGCAGTACCCTTCAGC 74730 28 100.0 33 ............................ TGTGCGGACTATCGTAGAGCAGTACCCTTCAGC 74669 28 100.0 33 ............................ CAATCGTTTGGATTCTCAAACTGCCACTCTTAC 74608 28 100.0 33 ............................ TCTTTGGGCAACTACCGCTCAACGGATAAGGTG 74547 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTTTGGCTTGATCGGTGTCATCGCGACGATGATCGACTTTGCCTTGTTAACTGCCCTCACCGAGTGGGGCCATGTCCACTACCTGCTATCAGCCGGGATTGCTTTCGTGGTCGCCACGATCTTTAATTATTTGGCCTCCATGCGCTATGTTTTCGTGAGCCGGTTTTCCAAGGAAGAGCGAATCCAGGAATTAGTCTTGTTTGTGACCTTGTCAGTTGTCGGGCTCATCCTCAACCAGGTCTTTATGTGGGCCTTCGTTGAGAAACTAGGCCTCTTCTACCTCCTAGCCAAAGTCCTTGCGACTGTCCTCGTGATGGCCTGGAACTTTATCTCCCGAAAATTGTGGATCGAATAAGACGCTAGGAAATCAGTCACTAGGCATGGCTTATCTTGGATAAAAGTGGGGAAATGCCTTATAGTAAGTGTAGGGGAAATGATAAAGTGAATGAAAACGGTCCAGGGATCGAATAAAAAATTTGATTTTATCAACTTCTTTTAGT # Right flank : TAACCAGCTAACAAAGTGTGGAAAATTTTTGCCAGCTTCTTCCCTCTTTACCGGCTATATGTATTAAATTTGACCCTGTAAGTTTAAGAAGGGAGCCCATATGTTACGAGCCTATCCTGCCTTGTTTTACTATAGTCCTGATGAAAGCAATATTCCCTTTTCAATTGTATTTCCCGATATTCCCAGAGCGATCACTCAAGGGGCGGATATTCCTGATGCGCTCTATATGGCGAGCGACTGCCTGGGCCTTCATTTAGTAGATTATTTAGATCGTGGGCAAGCTTTACCTGAGCCGACTTCAATCAATACCTTATCCTTAGAAGCCTTCTTGCCTGACGACGAGGGCTTTCGCTTTGATCCTGACCGCTCCTTTGTCTCCATGGTTTTGGTCGACCTCGATGACTACAGGAGCTAAGAGAGGATTTCTTCTCGGAAGTGAAGAGCTTTTATTTTAAAGCGGTCCAAGTTTTGATACAATAAGATTAAAATAAGTAAGTGAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91005-89940 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807450.1 Aerococcus sp. HMSC072A12 Scaffold667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91004 28 100.0 33 ............................ TTTGGACTTGCCGACAAGCTTTTCAAGCTTGGT 90943 28 100.0 33 ............................ TGGAGTTTCGTGATGGCCAGTGGAAGCGCTCAG 90882 28 100.0 33 ............................ TGGGAGCATGGTCGAATCAGCTTATCCAAAGAA 90821 28 100.0 33 ............................ CCTGAGCTGCCCTTTACCTTTTTCGTACTTCTT 90760 28 100.0 33 ............................ CCTAAGACGTGTTTTTGCATTTCTGTCATAGAT 90699 28 100.0 33 ............................ TTATTAAGTGTTTCAATAAAAAAATACACGAAA 90638 28 100.0 33 ............................ TTCTAAGTGTGCGACTAATACTTTAGTCACTAG 90577 28 100.0 33 ............................ TCAATATATGACCTGTACGGAGAAGGCTATCGT 90516 28 100.0 33 ............................ TAGGATATGCAAAAGACGCACATCTATTGTGTG 90455 28 100.0 33 ............................ TTGCAGGCGGCACTGAATGGATAAAATATTATT 90394 28 100.0 33 ............................ CAGTTGTATCTAAATCAGAAGACAAATAAATAG 90333 28 100.0 33 ............................ CGGCTTCGGCGACTTGAATGACTACGTCAAGCA 90272 28 100.0 33 ............................ TCGTCAGCTATGGCCGGAGAGATTGAGGAGTAC 90211 28 100.0 33 ............................ CATGAAAGTGAAAAAAGGTTGGGCCGCCATGTA 90150 28 100.0 33 ............................ TACATCCGCTTTAGCAAGCGAAAGCTCATCAGC 90089 28 96.4 33 ....................A....... TGGTTTGTTGAGCTTTCCAAGTTGCCCCATGAT 90028 28 96.4 33 ...T........................ TCAAGCATTTTTCAAGATTACGAAGATCCTGTC 89967 28 75.0 0 .......T........T.....ATC.TA | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : GACAGAAGGCGCCACAGTCTCAATCAACTATGCCAGCCAAGGTCAGAGCCGGGTTGAGAAAATGGAACTCACTAAGAACAGCTTAGGCGAAGGAGAGAAAGTCTTAATTATTGATGATTTCTTGAATGGTGGCGGGACAATCACAGGCATGTTGAGCATGACCAGAGAATTCAATGCGACCTGTGTGGGCATTTGTGTCCTAGCTGAAGTTCAAAACCCTGAGCGACAAGTGCCCTTCGACTACCAATCCCTCATGCAAGTCGTCAAATCACAAGATAACACCCAACTCGTCGAAGTCCTACCTGGTAGTATCTTTGATGATAAATAATAAATTAATCGAAGCTCCTGAGTCGCAAGCACTGAGGAGTTTTTTTGAGGGTTTTTCCTAGATAAAATGATAAGAATCATTTATAGTGATTGTAGCAAGCAAATTATTTCAAAGTGAATGAAAACGGCCGAGGGATCGAATAAGAAGCTTGATTTAATCAGCTTTTTTTAGT # Right flank : GATAACGACCAAAAAGAAAAAGAAGCCCAATCCAACGATTAAAGCTTCTTCTGTACCAGGGGAGGTAACAGCTCCCCTCGGTACTTCTATTATAGCACATTCATAGGAGGTTCAAATTATGTCAGCAGTTACAATTGTCTTACTCGCATTATTGGTTTTAGCTACTGTTGTCGGTTTAGGATTAACCGTTTACTCAACAATTAGAGATGAAAAGAAATATGGAAGAAAATAACTTTATCTTAGTCCTGCCATTCATTATCGTCTCTAATATGGGATTTAGCATTGGGAAGAATATCGGTGCTACTCCGCTCTGATCAATCGTCTTGCCAATAGAGAATGTAAAGTTGAAAATATGACGTCAGGTTTCTTCCCGCATACGCGGGTGATCTCACAAGGCGCACAAGATCAGATACAAGTTCAAGCTTCTTCCCACGCAAGCGGGGAAGACTCCAAGAAAAGAATATCATTCAGCAATACGAGAACACGAAAAAAGAGAAATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //