Array 1 306734-300508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058243.1 Xanthomonas campestris pv. raphani strain MAFF106181 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================================== ================== 306733 28 100.0 32 ............................ TGCGAGTACGCGCGACGTGCGAGTCAGTTCGA 306673 28 100.0 32 ............................ GCTTGGAATCCGGCTGCGCCGGCGGGCGAGGG 306613 28 100.0 32 ............................ TGTCACCGCAGAGAGGCGATGACCGGTTACCC 306553 28 100.0 32 ............................ ACCGTGAGAGAAACCAATGAAGCGGCTAGGAA 306493 28 100.0 33 ............................ ACGAAGACACCTTTAGATTCGACAATCATGCTT 306432 28 100.0 32 ............................ AGTGCGCCAACGGCCTTGGTAGCGGTGGCGGT 306372 28 100.0 32 ............................ ACCAGCGCGCGTTCGGCGTCGTCCTTCAACAG 306312 28 100.0 32 ............................ TGCAAGGGCGTCAGCCACAGCGCGGTCGCCAA 306252 28 100.0 32 ............................ AAGAAACCGAGCGCCGCATGCGACGCGACTGG 306192 28 100.0 32 ............................ ATGCGCCACCGGGTAAGGCTGGCCCTTCGGCC 306132 28 100.0 32 ............................ TCGCAGGAGGCAACACAGCGCGCGCTGAGCGC 306072 28 100.0 32 ............................ ATAACGGTGCACCCAAGCCGGACTGCAATCTG 306012 28 100.0 32 ............................ GCGCACAGGGTCCGCCTGTGACCGCAGCAGCC 305952 28 100.0 32 ............................ TTGCACATCGACAAAAAGACCACCATTACCAT 305892 28 100.0 32 ............................ AACTGATAGCCCGGAGCGAGACGCGCTGTATG 305832 28 100.0 32 ............................ TGATTGGCTGGGCGCCGGGTAAGCGCATAACA 305772 28 100.0 32 ............................ GCTGCGGATGAATTGCTTGATCGCCTCGCCAG 305712 28 100.0 32 ............................ TACAAGTATTGGCCCAAAAGCGACCGACTGGA 305652 28 100.0 32 ............................ GATAGCCGCGATGTTGACCACCGCATCCACCA 305592 28 100.0 32 ............................ AACACCAAGTCCGGCGCTGCCTGCGGGTTGCC 305532 28 100.0 32 ............................ GGTCAAAGAGGAATTGGCGCAGCTTGCAGAAC 305472 28 100.0 32 ............................ AGATATGCGGATGTGGCAGAGCATGCAGCCCT 305412 28 100.0 32 ............................ AGGCAGTGACCGTGAAGTGACCTCTGAACAGA 305352 28 100.0 32 ............................ AACCAGGGCGTGCGTCTTGATCAGCTCTTCGC 305292 28 100.0 32 ............................ ATCACATCCGAGCGGCGGTAGCTGCTGCTGAT 305232 28 100.0 32 ............................ TTCAATGCAGCGGTGTCGCAGGCGCAGACGCT 305172 28 100.0 32 ............................ ACGATGATCGACGTGCACAGCGGCGACGGCTT 305112 28 100.0 32 ............................ AGCAGCGCCAGCGCATCGGTGGTCATGCGCGT 305052 28 100.0 32 ............................ TTCGGCAAAGACGATTGCCGGGTCACCGCTCA 304992 28 100.0 32 ............................ GTTTAGGAACTCGCGCACCGCTCAACCGCCGC 304932 28 100.0 32 ............................ AATAAAAAGCCGCACGGCCCTTGCGAGCGGTG 304872 28 100.0 32 ............................ AGAATCCGGAGACGGGCGAGACGTTCGGCGAC 304812 28 100.0 32 ............................ ACCCGCTCCCAGCCGGCAGCGCCTGCTGCTGC 304752 28 100.0 32 ............................ GTACAGCGTGTTGGCGATAGCGCGCTGGTCAG 304692 28 100.0 32 ............................ GCAACATCGCATCGGTGTACCGCTGCAATCCA 304632 28 100.0 32 ............................ GTCCGGCATCATGTCCCCCGAAGCGGTGAAAG 304572 28 100.0 32 ............................ CTACAGGCGCCGCCGGCCCCGGAGATCCACAC 304512 28 100.0 33 ............................ AATCTGTCCACCAGCAGCATGTGTGACATTGGT 304451 28 100.0 32 ............................ TGTGAGGGAATTTTTGGGTACCCCACTCCCGA 304391 28 100.0 32 ............................ TAGCGTAGTGCCGAATAGCGCAATGGGAAAAC 304331 28 100.0 32 ............................ TGCACCTGTCGCGCCGTGACGGCGCTATGTTG 304271 28 100.0 32 ............................ GGCTCCACCCCCACCGGCTGGCGGGCGGCGAG 304211 28 100.0 32 ............................ GACACCGAAATCATTGACCGCCTCGGCGGCAC 304151 28 100.0 33 ............................ CTCTCGGGAACTGCTACCCAGCAGTCCATCGAA 304090 28 100.0 32 ............................ AACCATCGGCCAATGCGATCTTGCATGCTGCG 304030 28 100.0 32 ............................ TACACCACGCAGCAATGCCCGATGCCGCACCC 303970 28 100.0 32 ............................ TGCTGCGTCATGCCGGCTGCGAGGAGCTTGGT 303910 28 100.0 33 ............................ CTGATCCCACGTCGCAACGCCCGCCGGTGGCGA 303849 28 100.0 32 ............................ GCGACGGATGGTCGCTTCATGCGTGCTGGCGA 303789 28 100.0 32 ............................ TATCCAAATTACCGTCGCGAACGTATGCTGCC 303729 28 100.0 32 ............................ TGGCAGACGGTGTGCGCGGGCCTTACAAGCAG 303669 28 100.0 32 ............................ ATTGAGAATCGCCAGCTCGGATTCAATCTTCC 303609 28 100.0 32 ............................ TGGACAAGTCGCAGTTGCCCCTGGCCTGGAAC 303549 28 100.0 32 ............................ CAGTGGCAGGAAGCCAACACCGAATGCGGTGT 303489 28 100.0 32 ............................ GCATCCGATCGGCAGCGGAGCGTTCTGTCGTG 303429 28 100.0 32 ............................ TGCCCAGCGGCGTAATAGGTGATGCCACGGAA 303369 28 100.0 32 ............................ ATGCTCAGCGGTCTTCCGATGCCATGATGGTC 303309 28 100.0 32 ............................ ACGTCAAGACCTGCATCAATGGCGAACACATC 303249 28 100.0 32 ............................ ATGGCGCTGAAACGTAAGACACCCGATACCAT 303189 28 100.0 32 ............................ TGGTCGGACAGCAGAAGCGTTCCTGCGAGCAC 303129 28 100.0 32 ............................ ACCGGTCGGCGCTGTTTGGACCGCACCAACCT 303069 28 100.0 32 ............................ ACGGCGCACCGCCTTCGCCAGCTCGCGCAGGT 303009 28 100.0 32 ............................ GCCGCGCTTAGCGCGACGCGGACCGCGACCCC 302949 28 100.0 32 ............................ ACCGTCACCCGCACCACGTTGGCGGTTTCGCG 302889 28 100.0 32 ............................ ACTGAAGCCCAGCAGGCTGACGTTGGAAGACA 302829 28 100.0 32 ............................ ATCACTCGACGGTCGCCATCGGCCAACGGCAT 302769 28 100.0 32 ............................ CAGTCGTACAGCGCTGCGCCCCAGTTCGTGGC 302709 28 100.0 32 ............................ TATTGACGGCGATGCCTACGTGGCTGCACTGG 302649 28 100.0 32 ............................ TGGCGGTCATGTCCGACTGAAACCCGCAGTAT 302589 28 100.0 32 ............................ ACCCTGGACCGCGCCAACCTGGACGGCGCCAA 302529 28 100.0 32 ............................ AGGCTATTCCACGCCGCGTGCGCCGCGTGCAG 302469 28 100.0 32 ............................ GTCACTCTGCTTAAGGTTTTCTCGCAGTGCTG 302409 28 100.0 32 ............................ CGGCTGCAGGCCCTGGCCGGCGCCCAGGTTGA 302349 28 100.0 32 ............................ AAGGGCTTGGCCGATCTGGTGATGGATGTGGC 302289 28 100.0 32 ............................ TGGAGCCGGAGACGCGCGAGCGCTACGCATTC 302229 28 100.0 32 ............................ AGGTCAGAAATCGGGATGCAGGGCTATGGAAA 302169 28 100.0 32 ............................ GTTGAGCGTCAGCATGCGGTTGACGTCGTGCC 302109 28 100.0 32 ............................ TTGACGCCGCACGCCGACTGCGACGCAGGTTG 302049 28 100.0 32 ............................ ACTACCGCTCGCACGGCTTCGACTACATGGGC 301989 28 100.0 32 ............................ GTCGCCGGTGACTTCGTTGCAAGCGTGCTTCA 301929 28 100.0 32 ............................ AACCTGTCCGGCGCCAGCCTGTACCGCGCCAG 301869 28 100.0 32 ............................ TGGACGGCGCCAGCCTGTCCGGCGCCAACCTG 301809 28 100.0 32 ............................ AGCCTGGCAGCGGCGCCAGCCTGCCGGCGTTG 301749 28 100.0 32 ............................ TGGACAAGTTGGATGTACTTCCCGACGACCAG 301689 28 100.0 32 ............................ TGGTCGTCGTGCACGCCCTTGGTGGGGAAGCT 301629 28 100.0 32 ............................ ATAGCGCGCGATGCCGGGGCGATACTCGACCG 301569 28 100.0 32 ............................ TACCGACTCCCTGCAGCTGTTCAACGCCTGGC 301509 28 100.0 32 ............................ ACTTCGGTCTGCTGGATGCCATAGCGCGCGAT 301449 28 100.0 32 ............................ TGTCCCGGATCAGCAGGGTTCGCTTCGTGTGG 301389 28 100.0 32 ............................ CATGACCTGAAAGCCGGCCTTGCTCAACGTCT 301329 28 100.0 32 ............................ AGCAGGTCGCGCAAATCGCCCTGACAGTTGAA 301269 28 100.0 32 ............................ TGCTCGCGAATGGCGCCCTGGTCGAAGTAGTA 301209 28 100.0 32 ............................ TGCAGGCTGGTTACCCTGCCCCATCCGGTGCC 301149 28 92.9 32 .................AC......... CAGTTGACGCATTGGTCGCCATGCCCCAAGTC 301089 28 100.0 32 ............................ GCACTGGCCGTTGGCGAACAGCCAACCGCCCA 301029 28 100.0 32 ............................ AGAGGCAAAGTACCAACAAAGTTCTCTATTTC 300969 28 100.0 32 ............................ AGGTGGCCGAAGCCCTACATCAGCGACGGCCT 300909 28 92.9 32 .....G...T.................. GTCCGGCATCATGTCCCCTGAAGCGGTGAAGG 300849 28 100.0 34 ............................ ACCGGCACAGCAGCAGGTGCGGGTGGGGCGAACT 300787 28 89.3 32 ............A....T....T..... ACGAACTGGCGAGGATCGACCGAGGCATAATC 300727 28 96.4 27 ..........T................. TCGCTCCGCACGGGTAACCACATGCAT G [300701] 300671 28 75.0 107 CGCA........A.......T..T.... AAGCAAAGTCCTGCCGCTCGGCGCCTCTGAAAAATTCACTGTCGTATGGACAGGAAAAATGGCGGCCATCCTCGGCCACTTGTGATCGATCTATGCATTACTGGACC G [300663] 300535 28 67.9 0 AC.......T.T.G....T.TC....T. | ========== ====== ====== ====== ============================ =========================================================================================================== ================== 103 28 99.2 33 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCGTTGCAGGCATTGATGGCAAGCGGGTGGCTGCAAGGCATGCACGATCACCTGACCGCATCGGACATCCTTTCGGCGCCTGCCGGCGCCCAGCACCGGCAGGTCACGCGGGTGCAGGCCAAGAGCAGCCCGTCACGCCTGCGTCGTCGGGCCATACGCCGCCATGGGATCGACGCCGACACAGCCACCCAGCGCATCCCGGACACAGCAGCCGAACATTTGCAGCTGCCGTTCGTGGTCCTGGGTAGCCGCAGCACTGGACAAGCCTCCTTCCCATTGTTCATCCGCCACGGGGCCCTGTTGTCCGAACCAAGAGCCGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCCACCGTCCCCTGGTTCTGACCCTTTTTCCCAAGCAGGAAAGGGCCGCTTTGAAATCAATCACTTGGCAGGCACCCTGTGCAAAGGGTGCCTGCCTTTATTTCTTGGCTTTTCTTTAGATATCAATGGATTGGATGAATTCTGATCTT # Right flank : GAAGCCGCGCCTCCACCTACTGCTATCGCCAACGCCTGCCATCGACGCCTGCATCGCATCGTCGCGTGGCGGGCTTATCTGCGGATTCAGCTGCGCCGAGCGCATTCAACGCAGCCTGGCGCCGCGAACGCGGCCGATTGAAGCGTCATGGATTACAGGCGCTGCCACTCCAGCCCTTCGCCTCGCCGGTAATACACCGCCACCGCCTTGCCGTAGACCGCAGGTGCATCGACCAGTCCGAAATAGCGCCCATCCAGGCTGTTGCCGCGATGATCGCCCAGCATCAGCAGCTTGCCGGGCGGTACTGTCAGCCCGGCGATGTTCGGGCCGCCGCCATTGCCGAGATTCAATGGCGCCAGATGCGCGCCGAAGCGTTCGGCATCGCGGCCTTCCGATGCCAGGGGCTCACCGTTGATCTGCAGATGGCCGTCGATCAAGTCGACCCGGTCGCCTGCCACCGCCACGACCCGCTTGATCAAGCGTGTGCCATCGCGCGGCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //