Array 1 45036-44421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROI010000011.1 Listeria booriae strain FSL L7-1836 NODE_11_length_115383_cov_30.576388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 45035 30 100.0 36 .............................. AGTATTGCCACGCGGTGGAGTAGATACAAAGGTTCA 44969 30 100.0 36 .............................. GCTTTTGCATCGTGTGCTGCCATCCGTCAAAACTCG 44903 30 100.0 36 .............................. AACATTCTAAAACAAGCTAATGAAGAAGTATCATTA 44837 30 100.0 36 .............................. ACCTTCGAATTTAATTGTTATAGAATACCATATTCC 44771 30 100.0 35 .............................. TCTCCTATCTCATTTTGATATTCATACACTAGCAG 44706 30 100.0 35 .............................. CGTTTCAAGTAGACCCTTACGGAGCGAACGCTTAT 44641 30 96.7 35 .............T................ TGCACAATCGCTTGCGCAATGAGCGTTTTCTTCTC 44576 30 96.7 36 .............T................ CCTCTATTACCTGGTAACCAAACAGAAGGGTCTTGG 44510 30 83.3 31 .G.........G.T..............TG TCGCTGTATCCCTGGTTTTTTAACGCGTCCA 44449 29 73.3 0 .............T..G.G...-.CC..CA | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 95.0 35 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGCTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAATAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGAGGTTAGGCCTATTTTCGGAGTTTGGGTTGTAAGATTTGAGGGCGATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTATTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCG # Right flank : AATAAGGCATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTAAACAATGGATATCCACCCTCTTATCTATGCCCCATATGTTGAACATTTTTAGCATGCATTTAACACCAATTACCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACGGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGTGACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTTGCATAATACTTAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 48576-48283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROI010000011.1 Listeria booriae strain FSL L7-1836 NODE_11_length_115383_cov_30.576388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48575 30 100.0 36 .............................. AAAGATGATTTAGAAATAACATTTTCTAAAGTAACA 48509 30 100.0 35 .............................. CAAGAAAACTATTTAAACGAAAAGGCGCCCGTTAA 48444 30 100.0 37 .............................. CCTAGCGTGCCGTTTGACACGATTGTCGAAATTGAGG 48377 30 100.0 35 .............................. ATCTTCATACAATTCCTTTTCGTTAAGCGTATGGA 48312 30 90.0 0 ..................C.....A...T. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.0 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTGTTTTTTGCTTAGGGGGAGAAAGGATTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CTCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAATACTACAAGTTACCATAGACAGGCCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAAATCACTCGATATTCAGCCCACAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 209999-209634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROI010000005.1 Listeria booriae strain FSL L7-1836 NODE_5_length_307888_cov_37.094694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 209998 35 100.0 31 ................................... TACAAGAAAAACGTGCTAGAGAAAGTCGAAC 209932 35 100.0 31 ................................... TAAACGGTACGAGGGACAAATATCTTCTATA 209866 35 97.1 31 .........A......................... TATGTAGACCAGCTATACCCAACAATGATGA 209800 35 100.0 31 ................................... AATGGGTTTACAAAAGGAATTTTTTATACAA 209734 35 100.0 31 ................................... CCTTTAAGGTTAGAAAATCATAAACTTATAA 209668 35 88.6 0 ...........................T.T...TA | ========== ====== ====== ====== =================================== =============================== ================== 6 35 97.6 31 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAAT # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAAGTAAAAAGCATCAAGAACAATTTGCTCCTCCTTTACGAAAAGGTGGCTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCTAAACTAAAACAGAACACACCACTGTCATAGCAAGAAAATACTGCGTCATTTACTACTGATTGGATGAGCATCCTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : CTTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCTAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAATTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTCTTTTTTCTGGTAGTATTAATCCAGCTATCCACTCTTTCGGTATGTCCAGAACTCTTTAAATATTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 297795-298353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROI010000005.1 Listeria booriae strain FSL L7-1836 NODE_5_length_307888_cov_37.094694, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 297795 30 100.0 36 .............................. ATTTTACGACCAGGTATGATTTTATTTCGAGCATAT 297861 30 100.0 35 .............................. TCTAGAAAAACAAATGGATTTGACCGAAAAACAAA 297926 30 100.0 37 .............................. ATTCTATATAAGATGAATGATGATAGTTTGCAAAAAT 297993 30 100.0 36 .............................. TTCACTTTAACTTTACCCAACACCACAGGGAAGCCC 298059 30 100.0 36 .............................. TCCGGAATCTCGGGGAAGTCGCCGCCTCCGTCTTCC 298125 30 100.0 36 .............................. TTTTGAGTTAGTGACTTTGTTTTGAATTCTACTTTT 298191 30 96.7 37 ..................C........... CAAGGTATTGCGGCTGGTATTGATGCAGATGCAAAAC 298258 30 93.3 36 ..........................G.G. AAGGACAAAGGCCAAACGGTACACTTTACAAACTCG 298324 30 80.0 0 .......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 96.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCAAAAGTAACGAGAAACATTTTCAAAATCTGCAGAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCATTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTATTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGAAAATTTAGGATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTATGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCTTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAAGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //