Array 1 183116-184569 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMC01000002.1 Acinetobacter ursingii strain GTC 3702, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 183116 26 100.0 34 .......................... AATATACTAAACCGAAGAGCCTTAAAACACGGGC 183176 26 100.0 34 .......................... TGTAATCGTTGTAAAAGATCTGGATTTTCGTCGC 183236 26 100.0 34 .......................... AGAAAAAGATGATACTGACTTAAATATAACCAGC 183296 26 100.0 34 .......................... TGATAAGTTTTACCTGAGTATTGAATAACATCGC 183356 26 100.0 34 .......................... ATTGGTTGAAAGCTAGAACAGCTGGAATGAGTGC 183416 26 100.0 34 .......................... TATTTTAGACCCCATGTATCCGACTGCAACCGGC 183476 26 100.0 34 .......................... AATTCCAGCAATCGGAGCAGCCAAACCTTGAAGC 183536 26 100.0 34 .......................... AGTTTGACCGCCATTAAAATATTCATGAATCCGC 183596 26 100.0 34 .......................... ATGTATCTGGCACATGCCGTATCGAATAGTTCGC 183656 26 100.0 34 .......................... TGTGGAGTATCCCTCTGATATTGCAAAATGTTGC 183716 26 100.0 34 .......................... AAACGCAATTCTAATGATGTGAAATTGCATAGGC 183776 26 100.0 34 .......................... TGAATTGAATCATCGTCACCGCACAATACTTGGC 183836 26 100.0 34 .......................... AGAACGTCTCAGTCATTGAAGATCATCAACACGC 183896 26 100.0 34 .......................... TTTTGATTGGCGTGATCTGCCAAATGGTTCTGGC 183956 26 100.0 34 .......................... TTCTGGAATCAGCAAAAGCTTTCCACCTTCAGGC 184016 26 100.0 34 .......................... ACACTGTTCTGGATTTTCTTCACACTTAGAAGGC 184076 26 100.0 34 .......................... TCTCAGAGCTTCAAATATGCTATGCGTTGCTTGC 184136 26 100.0 34 .......................... TGATACGGATCAGCCCGACATTGATGATCAAGGC 184196 26 100.0 34 .......................... ACTTAAAGACTTTACCCGTTACCACAAGTGATGT 184256 26 100.0 22 .......................... AAGAAGAATGGGATGCGGCTGT Deletion [184304] 184304 26 100.0 34 .......................... TGAAAATAGCGATTGGCGTGATACGCCTGACGGT 184364 26 100.0 34 .......................... AAAGTATCGATCGCATTGCTAATTCAGAACGTGT 184424 26 92.3 34 .............A....T....... GCAACGAACAGTTAGAGAGCAAATGCTCACGGGC 184484 26 92.3 34 ..................T......G ATTGGAAATGGACAAGTTTCAAAAGTGGCGCGAT 184544 26 76.9 0 .................AT...TTTT | ========== ====== ====== ====== ========================== ================================== ================== 25 26 98.5 34 TTCCTATCGCATAGATAGCTTAGAAA # Left flank : TAAAAATTCAGCTTTTTCGCTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGCGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAAGTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAACGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTACTCTTTAATAATATAATAAAATCATACGCTTATGATTTAACTTATTTTTAAAGCATAATATCAAATTATTAAACTAACTCATTGTTATTAAATGATTTATTAATAAGAGTTTATAGC # Right flank : TCGAGACTCCAAACATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATCGGTGCAGTCATCATGGCCCGATAAGCCAAACATTCCTGCGTTTCACCTGTTGCTTGAGATTTGGCATTCAAGCTATGACATCCCATCAGTCCCAAAGAGAAAATACATCCTAGAATAAATTTGATGAACATTGGATTTTCTATAACTTAGTATTTGCCGATATCAACTCAAATTTTAAAACGCAAAACAGCAAATAGAAACCTTTGAATAGACTTGTTTCATAAAGTCCTTTCATTTTGCCTATGGGAGAAAAATAAAGAGGGTTTAAACAATGATGAAAGACGTCATAGTGTATAGATCTTTTAAAATTCGCTTATTTTCTTAAAATCTTCTGCCAATATATAAGCATTTTAAAAAGATGAGCTTAATACAATGACAAATCCAGATATTCAAAAGGTAGAACTCGCAAAAGCCTATCGTTTACTTAATCATGGCCCTACTGTACTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTATCGCATAGATAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched TTCCTATCGCATAGATAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3724-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMC01000013.1 Acinetobacter ursingii strain GTC 3702, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3723 30 93.3 31 ............................CA CCATCCAGTGAGCGTTTGAGGGAAAGAAATA 3662 30 93.3 30 ............................AA CATTTGCAGCATTGGCAAACATAGGTGTAT 3602 30 93.3 30 ............................GA AGCTGAAAAAGCAAATGAAGCACAGGGTCA 3542 30 96.7 30 .............................A AATCAGTCATCACATAAATTTTTGTGAAGT 3482 30 100.0 30 .............................. CGTAGTTTTCAATCTGTGCAATCTGATCTA 3422 30 100.0 30 .............................. ATGACGTTGATTTATCTAACGTACCTTTGC 3362 30 100.0 30 .............................. TAGCGACTGGATTAGATAAATTCCAACCAC 3302 30 96.7 30 .............................A TTAAGACTTTCTTTGCAAAGTTAGAAAGAA 3242 30 96.7 30 ............................A. ACTGGCCACGACATTATTTTAATTACACAG 3182 30 96.7 30 .............................G ATCCGCACCGCTTAAGCCGAATAAATACAT 3122 30 100.0 30 .............................. ATGACGCTGTTGCACAACAATTAATTTCTA 3062 30 100.0 30 .............................. TTAACTGGTGGTACTGGTCAAGGTAAGTCA 3002 30 100.0 30 .............................. TAAAAAACACAGTGATTAATTTAACTTGTC 2942 30 93.3 30 ............................AA TAAATTCGTTTTGCTTTGGTGATACTTCAC 2882 30 96.7 30 ............................A. CGATTCTAAAATCAGCTTTCCATCGTCGGT 2822 30 93.3 30 ............................AG ATTACAGATCAGCATGCAGACGCAGTTAGC 2762 30 100.0 31 .............................. ACTTCTTTTCTGATCTTTCGATATGTTTTCT 2701 30 93.3 30 ............................AC AACGGCAAACTTGGCGGCAGAACTAATCAA 2641 30 93.3 30 ............................AA ACAGTTAATGGCAAAGTTCAAACTGCATAT 2581 30 100.0 30 .............................. CGGTTTGCCCAGATAAATATGCTCATATTC 2521 30 93.3 30 ............................AA TTGGCAAAATCACGACCAACTTCTAAAAAT 2461 30 93.3 30 ............................CC CTCGGAGTGATTTAGAGAAAATGTGTGGCG 2401 30 96.7 30 ............................A. TCACTAAAGAAATTTATGCTTTCCCTGCCA 2341 30 93.3 30 ............................CG CATGCTGACTCACCAGAGCATACCGATTAT 2281 30 93.3 30 ............................AA AGTTAAGGGCCATTTTTTCCACGATTTAGA 2221 30 93.3 30 ............................AC TCAGGATTGGGATTTGCATAAATCACCCCA 2161 30 96.7 30 .............................G ACTACTCAAGCGCACTATAACATAAAAGTA 2101 30 96.7 30 ............................A. TAGGATTGAATCGTTGGATCGTGGGTTGCT 2041 30 93.3 30 ............................AA TGCACCTGATTATGTGGTCGATGCGATGAT 1981 30 100.0 30 .............................. TGGTGTGAAATATCGTTGGGATGTTGATTA 1921 30 96.7 30 ............................A. TTGTCATAGCACCAGACATGGTTTTGAGCT 1861 30 100.0 30 .............................. TTTTTGTTGTCACATCAGGCACAACCGAGC 1801 30 93.3 30 ............................AA GCGCCGAATTGCTCCAACCATCCGTCAATT 1741 30 96.7 30 .............................A AAACTTGATCTATCAACGGATTAATTTTAT 1681 30 96.7 30 ............................A. CAGTTGTCATAAAGTAGCCATCAACCCAAA 1621 30 96.7 30 ............................A. CAGATTGAGCTTGTATGTTTAGCAGGGCGT 1561 30 96.7 30 ............................A. CATCTGTTTGTGTAAAGGCTTTCTCCACTG 1501 30 100.0 30 .............................. TGTTACTGGTTATGAAAATGGCTCAATCGC 1441 30 96.7 30 ............................A. TTGTTGATTTAACTGCTGAACCATACTCAA 1381 30 93.3 30 ............................AA TAAAAAATCAGCTATATTCATAAAGAAAAA 1321 30 96.7 30 .............................A GCTGTTTGCCTTTCTCATAGATACGACAGT 1261 30 93.3 30 ............................AA GTAATGATTCGGGGAAATCATGGGCGACTT 1201 30 93.3 30 ............................AA TTCTAGAACATATATTTGGTTTTACCACGT 1141 30 93.3 30 ............................GA CACGGTTTTTAATCTCGCTCACCTTATCGC 1081 30 96.7 30 ............................C. TGATCTTGTAATCAGTAGACTTTTTACCGA 1021 30 100.0 30 .............................. TGAACACTCAGAATTATTCATGAAGTTGAA 961 30 93.3 30 ............................AG TAATAGCAAATATGCTTGAGTTAAGATCGA 901 30 100.0 30 .............................. ATTTGCAGCTAAAGCGGTGCTTTAGATACA 841 30 96.7 30 .............................C AAGTTTAGGCAAGAAGATTGCAGTCATTGA 781 30 93.3 30 ............................AA ATTCATCAATAAGGGTGTTCTGTACTAAAA 721 30 93.3 30 ............................AA TCAAAAATCAATATACAGAACAAAGCTTGA 661 30 93.3 30 ............................AA ATTAAAGCCCAATGATTGATAGAGATCGAT 601 30 93.3 30 ............................AG TAAAAAATCTGGCTTTTATTTACTAAGAGT 541 30 96.7 30 .............................G TCGCCCAACTCGACACCGCTGACGATGACG 481 30 93.3 30 ............................AG AAGCCGATGCAGCAGCAGCGGCGGAAAAGG 421 30 93.3 30 ............................AG AGCAAAGGCAAAATCCAGTCGATGAAATTT 361 30 96.7 30 ............................A. TACTCATCCCCATCTGTAGAGTGAACATGC 301 30 100.0 30 .............................. TAAATCTGCTGGCTCTTCCCCTTCTATGCG 241 30 100.0 31 .............................. GTATTCTTCGTTGACGAGCCTTGCTGTTTCT 180 30 96.7 30 .............................G ATAGCAACTCAATTACATCCTGAAGCAATT 120 30 100.0 30 .............................. GTAAGCTTGTGAGGCAATAGCATCACGACC 60 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== =============================== ================== 62 30 96.2 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TAGAGCAACTGAATCTAACTCATTGGTTAGCAAGGCTGCAAGATTATGTACATATCTTATCTGCTCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTACTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAGAACGCCGTGGAATTTCAATTGAAGAAGCACAGGAACACTTTAAAGCATTGGATCTGATGGAGACCTTTGAACCTTATATCAATATGAAAAGTCAAACCAATGATATGAACTTCCGTTTGATTATTGGAAAAAAACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCCACAGTACCTGAGTTTTAACCCAATATTTTTTACACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTAAAACTTTGGGTATTTTATACTTTTTAGGGATAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTACT # Right flank : TGTTGTGCTACCAACAAAAGATCGTACTAAA # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36-8594 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMC01000010.1 Acinetobacter ursingii strain GTC 3702, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 36 30 100.0 30 .............................. ATTTTGAGGCTGTTCAGCAATTTGGACAAT 96 30 96.7 30 .............................G TTCGTGTAATGAATATTAAACTCGGAAACG 156 30 93.3 30 ............................AA AAATAAAGGCGGCATTGTTGAGCCAACCGT 216 30 96.7 30 ............................A. TCAATAGATTTAAGCTTTTTGAGGATGATT 276 30 96.7 30 .............................A CTCCCGCGCCCGCGCTATGTCGTCATTTTT 336 30 96.7 30 .............................G CTGAATGGGCTGAAAATATAAAAGCTGCCT 396 30 93.3 30 ............................AG TCAAGTTTGAAGTCTTACGCCAAAAATCAG 456 30 96.7 30 ............................G. AATTCTGGGCTTAACTTTTATGAACAAAGT 516 30 93.3 31 ............................AA TCGCTCAACAAGTTCATCAAAAAACTTGGTT 577 30 93.3 30 ............................AA AAGGTCGAGTCAGATGATAATGAGCTGTAA 637 30 96.7 30 .............................G TTTATTGTTGAGTTTTTAACCTCTTTCAAT 697 30 96.7 30 ............................A. TCAGCAGGCTTTTGAATAACTACATTTGCA 757 30 100.0 30 .............................. GTAGTTTGTGGCGTACTCCCGCGAAATAGA 817 30 96.7 30 ............................A. CAGGGGTTTTTCGCCAGTCTTCTGGTGTTT 877 30 93.3 30 ............................AG TCATTACCAAGTGCAGACCTTCACAAAAGT 937 30 100.0 31 .............................. TTAATGACATAAACTATAGTTGTCTTTTAAT 998 30 96.7 30 ............................A. TTAAGGCAATGCACTTACAAACATAAAGTT 1058 30 93.3 30 ............................AA ACTTTGAGTAAAATACTCATTAACTTGTTC 1118 30 93.3 30 ............................AC AAACTGGCTACAAGCAATTTTAACCCCTCT 1178 30 96.7 30 .............................A AAGCGACAACTGTAGAAGCTAGACCGAGTT 1238 30 96.7 30 .............................G TTAGTGTTGGCGCATCATTGCTATCTCTAG 1298 30 100.0 30 .............................. ATTTTTGAGTAATAAAAAATGTCACATTTT 1358 30 93.3 31 ............................GA TTACAGATAATACGATTATTAAAAGCCCAGT 1419 30 96.7 30 .............................G ACATTAAGCAAGGCTGTTCTAATGGTGCTG 1479 30 93.3 30 ............................GA GAAACATAATTGCGGTTGATCCAGAAAAGC 1539 30 96.7 30 .............................A ATAAGCCAATTGGTGGCTGATATGACTGAG 1599 30 93.3 30 ............................AA TATCAAGCATCAATACGGTAAATACATCAA 1659 30 96.7 30 ............................A. TAGTTGGATCAAGCGGAATTTCACAATACA 1719 30 100.0 30 .............................. CATTTCTTTTAATCGTGCCAAATGTTCATC 1779 30 100.0 30 .............................. TTTATATAAAAACAATTTTTCTGTTGAACA 1839 30 96.7 30 ............................A. ATTTTGTCATCACAAAGACGGCCATCTTTT 1899 30 96.7 30 ............................A. TAAGAAATGGCAATAATGATGCTGCACTGG 1959 30 100.0 30 .............................. ATGTTGAAGGCATTATCGCTGTTGATCAAA 2019 30 100.0 30 .............................. TAAATTTTAACACACATACAGAAGCGGTCA 2079 30 93.3 30 ............................AA TAAAGACAAGATCATCTACAGATGATTTAG 2139 30 100.0 30 .............................. TAAATACTTTGAAAACTGGTGCTTGGTAAT 2199 30 100.0 30 .............................. TAAATGATGTGTCGATCTATGCCTTACTAC 2259 30 93.3 30 ............................AA GAGATTTGCAACGTGAGGCAGGCAAATCAT 2319 30 100.0 30 .............................. CTGAAACTTCTATCCAAGAAATATTTGTAC 2379 30 96.7 30 .............................G CATTTTCAAAAGATGATTTGCTCAAAACTT 2439 30 93.3 30 ............................AG AACCATTTCCGTTGCCGGAACCATTACTTG 2499 30 96.7 30 ............................A. ATGCTTGGTATGTTCATGGAAGCATTTCCA 2559 30 93.3 31 ............................CG AACGACGCTTAATAGAGCGGGGCACACTACT 2620 30 100.0 30 .............................. TGATAACTAAGGGTTTTTCTTTGGAACTGG 2680 30 96.7 30 ............................G. ACAAGAGACTCGCAGCGTATTTTTTAAAAA 2740 30 93.3 30 ............................AA GAAGATGCAAAACGTCGTTTTATTCGCGAA 2800 30 93.3 30 ............................AG AAGTTTTATGAGACTTGAGGCTAATACTTC 2860 30 93.3 30 ............................AA CCAACACTAGTATCGTCATAATCATGATTA 2920 30 93.3 30 ............................AG TGAAACCAGCCCACTACGCATTTCTTCACG 2980 30 96.7 30 ............................C. AATATTTTTTCTATAATTAAATTTTAAGTT 3040 30 93.3 30 ............................AG AATCGTCTAGCAATTGACAATCGGTTGGCG 3100 30 100.0 30 .............................. GCTTTTTACATATTTGTAAACTAGATTTCT 3160 30 93.3 30 ............................AA TTTGAAATAACTGTCGGGTCTATTTCTAGT 3220 30 93.3 30 ............................AA AGTCATCCCCTGCTGATCAAAAACCAACAG 3280 30 96.7 30 .............................A AGAAAAACCCTTAGTTATCAAAAGCTTATA 3340 30 93.3 30 ............................AG TCTTCACGATCTATCCCGATCGGTTCAATT 3400 30 93.3 30 ............................AG AATCGCTTTTACCCACAGAACGCAGATTAT 3460 30 93.3 30 ............................GA TCAACTCAACAGAAACATTATCAGGATGCA 3520 30 93.3 32 ............................CA TGACCACAAATTCTTTTTACAACTTTTACTTT 3582 30 96.7 30 .............................A TCCATTAAAAATTAAGCCCCTTATAGGGGC 3642 30 93.3 30 ............................AA AAAGGAGATTGATAAATAGAACCTTCAATC 3702 30 93.3 30 ............................AA TGATATTGAAAAATGAATTTTAACTATTGT 3762 30 100.0 30 .............................. TTTTATCTTCAATAACCGCCAAAGCCGTAT 3822 30 100.0 30 .............................. TGGCTTATCGCTGGTCATCAAGAATGATTT 3882 30 96.7 30 .............................G TAGTTGTTGTTGTTGTATTACCATTTGAAT 3942 30 100.0 30 .............................. TTCGCGGTTATTTTTTGCTATCGCAAAGTA 4002 30 96.7 30 ............................G. GTACCGATTTTTCGAGTCGGCGACATCGGC 4062 30 96.7 30 ............................A. GTTTGACTTGCTCATTCATTTTCTATCTCG 4122 30 96.7 30 ............................A. TCACAGTGCCCGTAGCGTCACCAGAAATTG 4182 30 93.3 30 ............................AG TCATAGAATGGCTTTGTTTTTAATCTATGG 4242 30 96.7 30 ............................A. TTTTAATAACAACAAGATTACTGTTTGGAC 4302 30 96.7 30 ............................A. CTGGAAACCGCCTAACGTGTCTTGGAGATC 4362 30 96.7 30 .............................G TTCCCAGACAGCTCAACCATGGGTGCTTTC 4422 30 96.7 30 .............................A ATTGTAGTGATTTTGAATTTTGTGATTAAT 4482 30 96.7 30 ............................A. AAATATCTATGGCTTCATAACCAATATCAT 4542 30 100.0 30 .............................. TTTAACTAAAAACTTAATCTCTTTCGTTTT 4602 30 93.3 30 ............................GA TCTTCTGATTACTTGACTTGTTGTTGTAAG 4662 30 100.0 30 .............................. TATCGATTTTGCTGCATCACTTAAATGTTG 4722 30 96.7 30 .............................A AATGAGTTAAAAAGATGGAAACAATCGGTA 4782 30 90.0 30 ..........A.................AG TGGCCTCATTAATGCTTGCGCCAGTAGCGT 4842 30 96.7 30 ..........A................... TATGCGGAACGATATGATCGACCACCGTAG 4902 30 90.0 30 ..........A.................AG TAATTAACGCTGGGCTAGATAATGTTTCAC 4962 30 90.0 30 ..........A.................AA TGGATCTAATTCAGCAAGCTCATCATTGTT 5022 30 90.0 30 ..........A.................AG ACGTAAAATATCGTCATGCAGTCGATTTCG 5082 30 93.3 30 ..........A.................A. TAAGAGCATCGTCGCATAAGTATGGCGTGC 5142 30 90.0 30 ..........A.................AG ATGAAGAAGCAGACAATCAACAAGGTATTT 5202 30 90.0 30 ..........A.................AA GTAAAGAAGTTGGAGAAAAATTGGTTGAAC 5262 30 90.0 30 ..........A.................AG TTCGCATAGTTGGAGGCTGTAAGGTTGGTG 5322 30 93.3 30 ..........A..................C AATTAACTCCATGACTGCATAGGCACCAAT 5382 30 93.3 30 ..........A..................C CAACAGACGCGGAATCAACGACAAGTTTAT 5442 30 93.3 30 ..........A..................G TTTTGCTCAAATTGTCGAACCATTGCACAC 5502 30 90.0 30 ..........A.................AC ACAGAATTATTTATACGAATATTGTTGGTT 5562 30 96.7 30 ..........A................... GCCTTGTCCACCTTTTGAATAAAGCAGATG 5622 30 90.0 30 ..........A.................AG ATAATAATATCCCTGAAGTTGAAGACTATA 5682 30 90.0 30 ..........A.................AG GCTCTTTTAAAACGGCTTCTACAATTGAAC 5742 30 90.0 30 ..........A.................AC TATAACCAAGTGGTATAGGGAGGAAATGAT 5802 30 93.3 30 ..........A.................A. ACATGTGCTGTATTGTTAAATTGCTAAGAA 5862 30 93.3 30 ..........A.................A. AAGGATTTTTAAATGAATATTGAAGAATAT 5922 30 93.3 30 ..........A..................A ATCTCTTGCTCAGTTATCATTCAACCTCCC 5982 30 96.7 30 ..........A................... ATATTTTCTCTCGACAATAAAAGGAAATAA 6042 30 93.3 31 ..........A.................A. ACCACTCAAAATCATATCCACCTTTTTCAAT 6103 30 90.0 30 ..........A.................AG ATATTAATCACGAAAGGTCAGGGTTTAGAA 6163 30 93.3 30 ..........A..................G TACCAGAACCGTCACCATTGCCATCCCCTG 6223 30 90.0 30 ..........A.................AC GTTAAGACAAATTCAGGAATTTGTAATCAA 6283 30 96.7 30 ..........A................... TTTCTGAGCAGTTCGTATGCTGCGATCAGG 6343 30 90.0 30 ..........A.................AA ATTATTGCAAGGTCATAATGTTTTTGCAGA 6403 30 90.0 30 ..........A.................CA GTCTTGTTACCGCCATTAAGTTACACCGAA 6463 30 90.0 30 ..........A.................AG TGCATCTGCTCATACGTCAGTACAGTTCAA 6523 30 93.3 30 ..........A..................A ACGCCTATAATAATTATTGGTCACTGTTAG 6583 30 90.0 31 ..........A.................CA AAAATTTGAGGAGTAGCTACTCATGGCACGT 6644 30 90.0 30 ..........A.................GA TAACCCAGTGTGGCACTGGTTAGCTATTGC 6704 30 96.7 30 ..........A................... ACCGAGCAATTTAGCAACATTTGCAGCCGT 6764 30 93.3 30 ..........A.................A. ATTGGTCATTAATACGATCGACAATTTCGT 6824 30 93.3 31 ..........A.................A. TTCACGGCAAATAGGGGCGTAGTTCTTCAAT 6885 30 90.0 30 ..........A.................AA TAGAAGCTGGACAGGTGTTTAATGCTTGCA 6945 30 90.0 30 ..........A.................AA AAAGAGGCTAATTGTTAGCCTCTTCAGAAA 7005 30 93.3 30 ..........A.................A. TTAGCATCCCTAATGGCAGGGCAATATATT 7065 30 90.0 30 ..........A.................AA TCGTCACGAAATAATACAATCTGATATTTT 7125 30 90.0 30 ..........A.................AC ATCATCCAGTGTAGCCAGTTGTTTCTCGTA 7185 30 93.3 30 ..........A.................A. ACTCAGGTGCTTGGCAGAAAAACGATGAAT 7245 30 90.0 30 ..........A.................AC TAATGCGACGAAATATAACGTTACGCCATA 7305 30 93.3 30 ..........A.................A. GCGCGACTACACCATTGCCGCGTTCTCTGT 7365 30 90.0 30 ..........A.................AG TCGAAAAAATCAGAAACTTTTTCAAAAAAA 7425 30 93.3 30 ..........A..................A GACCCTAGCCCCTACGGGGGCTAACTTATT 7485 30 96.7 30 ..........A................... TTTATCAGCTTCAGAGATCACGTAGTAAGA 7545 30 90.0 30 ..........A.................AA TAATTCGTGGTGTAACTCCTAGAGAGGCTT 7605 30 93.3 30 ..........A.................A. GAAAGTGGCATCTTTGTTGTGTACTAAGTA 7665 30 90.0 30 ..........A.................AC TTCTAAGTACAACTAAAACACCGTAATTAT 7725 30 96.7 30 ..........A................... TATTGTGCGTTTAGATGTGCTGTCATAGAC 7785 30 93.3 30 ..........A..................A ACACGATTCATTACATGGAGCGTAACCACA 7845 30 96.7 30 ..........A................... TCAAGCTTCGCTTATGGGCATTCCGAGTGA 7905 30 93.3 30 ..........A.................A. TCTCAACGTCCTCGGCGTATTCGTTTTCGT 7965 30 93.3 30 ............................GA ACACGCTGAAAAGCCATGGATCCGCGACAT 8025 30 96.7 30 .............................G ACGATTCTCTTTTTGCTGCTCATTTTGAAT 8085 30 96.7 30 .............................A TACCAACATTTTGAAGATCAACATATTCAG 8145 30 93.3 30 ............................GA AAGCAATGGATAGAATAATTCGTAATTCGT 8205 30 96.7 30 ............................A. TTGGCAATGTTACAGATGAGTTCTGCAAAA 8265 30 93.3 30 ............................AA CATACCCAAAAAGTCTTTGATCTTATTGAT 8325 30 93.3 30 ............................AG CAAGCAATAGTGAGCCAACCTTATCTGTTA 8385 30 96.7 30 .............................A TCCCCAAACGAAAGCAAATTCATGCGTATG 8445 30 100.0 30 .............................. TAAGCTGCTGAATCGCCCACATCTTATTGC 8505 30 86.7 30 ..........A.......T.........GA TCCAGAAGGGGTACAACCGATTAAGCCTTT 8565 30 93.3 0 ..........A..................G | ========== ====== ====== ====== ============================== ================================ ================== 143 30 94.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AAATTAAAACAATTAATGCACTATGTATTCATGCAG # Right flank : GCAAACGATGTGTAAAAGTTTAAGCGGATTGATTCACGAGACTAGAGTATGGAATCTAGCCGATCATAAAAATGAGTTAAAAAGGAATGATATAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTAAGTTAATAAGATTATGCTGGTAAATCGAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGCTTTTGAGTTGCAGCAATCTCAAGTGTTTTACCAGCTTCTAACACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGGTTTGGCTGTTCACTCGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAATAGATGCACT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : GTTCATGGCGACATACGCCATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //