Array 1 35466-36334 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAC01000002.1 Dethiosulfatarculus sandiegensis strain SPR contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35466 28 100.0 32 ............................ GGTAGGAGCGACTAATTCGTGATCGTTTTCCC 35526 28 100.0 32 ............................ TACGAACGATGTAGATAACTGCGTATCGCCGT 35586 28 100.0 32 ............................ ATGGTAGACGGAAGTGCATCAAAAGCCTTAAC 35646 28 100.0 32 ............................ TAATTTTCCGCCCGAATCATCAATTCGAAAAC 35706 28 100.0 32 ............................ GGGATGTACTAGAGCGTATAAGTGTCCATTAA 35766 28 100.0 32 ............................ TTGTTGATTAAGTAAGACAGCTCACGCCCAAG 35826 28 100.0 32 ............................ GCATGAGTGATGGCGATGATTCATACGGCAGT 35886 28 100.0 33 ............................ GCAAAAAATGGTTGGGATCATGCGCGAAGCCGA 35947 28 100.0 32 ............................ TGGTGGACCAGGTGCAGGGGTGGAACCAGGCC 36007 28 100.0 32 ............................ ACCAGTGCCTTGATCTGCTGTAAAAAGGCTTC 36067 28 100.0 32 ............................ ACCAGTGCCTTGATCTGCTGTAAAAAGGCTTC 36127 28 100.0 32 ............................ TAAAAAGCGGCTTCCGCTTGCGCTTTGCATGC 36187 28 100.0 32 ............................ TTGGGGCCGGAACAGTCGCGACATTGATACGT 36247 28 96.4 32 .C.......................... ACCAGACGCAGGTCATGACTCCAGCGTATATG 36307 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTGCGCAGGGTGCAGGCCAAAAGCAACCCCGAACGCCTGCGCAGAAGACTGGCCAAAAGAAAAAATATATCCCTGGAGCAAGCCAGGGAGCTGATCCCAGAAACCGCGGCTCAGAGATTAACGCTGCCCTTTGTGAGCTTGCGCAGCGCAAGCACCGGCAGGTCATTCAGGCTCTTCATAGAGCATCTTCCCTTGGAGCCTGAACCCAAAACGGGCGAATTCAGCCTTTATGGCCTTAGCAGCACAGCCACGGTTCCCTGGTTCTGATTAACCTGCGCCCCCGCTTGAAAAGGCGGGGGCCCAGATGCAAAGTCAAAGAAAAAGCGGCAAAGAAAAGTCGGAATATTTGTGAGTTTGTGATTTATTTTTGACCCTTTTTTTGCGGCTCAAAAAAAGTTATTTAAAATCAGTATATTAGAAACAGGCTAAAAAAAAGGGTTTTTTGAGCTTAAATAGATGTAAATCTTTTTAAATTAATAGCTTAGCTGAAAACAGCTCTA # Right flank : AAATTATCTTTACCTTTAAATTTTCCAATAGATATCAATTGCTAGACAGGCAGCCCCTCCCCTTTCTACCCCCTCAAAAAATACTGATGCCCCACTGCGCCCAAGATCCATACTGCGGCGGAGAGGGTGAAGGCGCTGTAAAAGGAGTAGCCCGCCTTAAGCACACCCAAAAGGCACACAAAGAAAAGAATGCTGGGGATTATGCCCCAGATGGCGGCGCTCGCGGTTTGGATCATAAGGTCCGTGTCGCCCTGATTTTCCCAATGAATCCAGCAGAAGACCAGGGCTCCGGTAAGGGGCATCACCCCTATCAATCCCGCCAGAGGGGGGTATTTTTTGGCCACGCCGGTGGCCAAAAGGATAATCAAGAGGCTTAAACCGATTTTGATTATGGTTTGCAGCATGACGGCTCCGTTTTTTGCAAAGGGAGTTTGGCAAAGAGACTGATTTTAAATTTAGCACAGAGCAAGCCGGGTTGTTATTAAGGGGCGCCAGGTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 381354-379136 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAC01000014.1 Dethiosulfatarculus sandiegensis strain SPR contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 381353 32 100.0 35 ................................ CCCACTTAATCTCACCCCAGCCGGTTACGTCCCTG 381286 32 100.0 34 ................................ GATATAGACCCCCCCTTGTTGCGCATAATCGCTG 381220 32 100.0 32 ................................ CGCATGCGCTGCACCGTGGTCTCTATGATGCG 381156 32 100.0 32 ................................ ATCTTGTGCGCGGATTTTAGTTGTTCCTGGAT 381092 32 100.0 34 ................................ ACAAGATCAAAGGTATCGGGCATGAGGGGCTCCT 381026 32 100.0 35 ................................ GTGGACTGCCTTACCCTTGACTTCCACGGCGGCCA 380959 32 100.0 36 ................................ TTCTTGGGATGGGTTGAGTTTTTCCCGATGATAGCG 380891 32 100.0 35 ................................ TGGCCGACTCCGGAGTGTGCCCGCCGTTTGATCCG 380824 32 100.0 35 ................................ TGTATCACGCCTGGCGTCGGCGGGAGCATCCGGCG 380757 32 100.0 33 ................................ CACGACCCCTTTGCCTGATTAATCCAGCAAAAA 380692 32 100.0 34 ................................ CCACTGCGGCGGCGGCTCCCCGTGATCACTCCAA 380626 32 100.0 34 ................................ AGGGTGGAGGATGCCCAGGCCGAGGTCGATCGGC 380560 32 100.0 34 ................................ TCAGGCGTGATCGCAGGGGCCAACAGGGCAACGA 380494 32 100.0 34 ................................ CAAAACGGTGATGCTCTGGCCTTGGTTTATTGGC 380428 32 100.0 34 ................................ TAATTTTAACAAGTCTTTGGAGGGTTGAGCATGC 380362 32 100.0 35 ................................ TCCGACCGATCCAAAAAGGCCCAGGTAGAACGCAA 380295 32 100.0 34 ................................ CAGGCTCTGCCCCAGGCTTTGGGCGACGGGGCCT 380229 32 100.0 34 ................................ TTTTGCCTCCAAGCCGGATAGCCCCAGGGTTGAC 380163 32 100.0 34 ................................ AAAACTGCGTGGTTCCAGTCGTACGACCCCGCCG 380097 32 100.0 35 ................................ TTAGCCTGTGCTCCGGAGGCGGAGGGCTTGACCTC 380030 32 100.0 35 ................................ AAGAGCATATCAATAGCCTTTATGGGCTTTTTGTC 379963 32 100.0 34 ................................ ATAGACCGCCTCATATCCCGCATCAGCCCAAGGG 379897 32 100.0 37 ................................ TCCCAGAGCCTAGCCACAGCTGGCCAGGGGTTTAACA 379828 32 100.0 34 ................................ TTGGATTGGGCGGTTCTGACGGGCCGTCTAAAAC 379762 32 100.0 37 ................................ CAAAACAAATTCCACGGCGCGTTTAAATGTCTGCTCC 379693 32 100.0 34 ................................ CGCCCGAGATCTCGCCGAACCGATCATATTGGCG 379627 32 100.0 33 ................................ TCGTTACTGTCGGGCTTAGGCGGGTCCGTGGAT 379562 32 96.9 35 ...........T.................... TGGATATGGCCGAAGAGGAGGGGGTGGACGTGGTC 379495 32 96.9 33 ...........T.................... GATTGCTCTCAAGAGAATAAAGGGAATGGCCAT 379430 32 96.9 33 ...........T.................... AAGCTGGGGGGGGATGCAATTTTAATCGAATCG 379365 32 96.9 33 ...........T.................... TTGAGTGCTCGGCAAGCATGACGGGTGTTTGGT 379300 32 96.9 35 ...........T.................... AATCCCTCCCTCCTCAAGTGCGACCTTGGCCTTGG 379233 32 96.9 34 ...........T.................... TGTGTTTTTGTCTCGCTCATGACCTTGTCCCTTT 379167 32 84.4 0 ...........T.........G....CT..C. | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : CAAGCCACCCAGGGCATAATCGGCACAGCCGCCACCGGCACCGACGCAGCCGCGGCCTTTTTCAAGGTGCTGGCCGGAGGCATCATGAGCCGGGCGGCCGAGGGCGGAGCCAACGCCTTTTTACTCATCCGCCTCGGCGCGGCGGGCATGCATTATCTAAGACCCCTTACGGAAAAAACGGCCTGAAGCAGGCGGGACTCTTCAGATCAAACCTGTTCCATGGCCGGTGCTGAAAAAGAGGATTTAAACAACGCGGGGCGACTGCTCATTTTGGCATTAAAAACAAGCCGAGTCCCGCCTCTTGCCAGTCTCTTGAACTTCTGCGCGAACCTGTAACACACATAAAAACCCCGGGAGGTTCGCGCACGTATCAAACCATTGATTATAAAGATAAATTTAAAAATGCGATATATTCACCCCCTCCTGAAATGCGCAAAAACTTGGGGTTCGCGCAAACCTTATTATTTTCTTTGTATTTTCAATTTGTTAAAATACCCGCA # Right flank : TCACAAAAAAGGGAGACAAAACATGTCTCCCTTTAAATCGTGATCCACACAAACACCATAAAATTATCCGATTCCCAGAAAACAGGCCTCCCGTCCCCATCTTCCAGGCGGATAAGCTCTTTTTATCTGGGGATCACCTTGATATCACAGTGGTCGGTATTATCCCGCAGGCAATGGGTAACATGAACACAGGAAAGGTCCTTGCTGTAGGCCTCATATTTGGCCTGATCCACCCGGCAATAGATCATGCCTTCTTTTTCCTTTCCCATCTCCTTCCAGGTTTCGGCCAGGGGACAGTTGTAGACCCTTGCAACCGGCGGCTCAGCGCTCACCGACTCCGCCTCAAAACCAAGCATGGGCAGGTCTTCGGAATAGTTCTCAGGCGTCAGGTCCAGCCCCTGGTCCAAGGTGTCCTGCCTGGCGGACAGGCCTATACTTTTGCCATAGGCGTCGGCAACCTTTTCAGCCAGGGCCTCGCCTTTTTCCGGGCCCAACTCTTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28541-29058 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAC01000036.1 Dethiosulfatarculus sandiegensis strain SPR contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28541 29 96.6 32 ............................C AGTGTGTGACTGAAAAAATTCTACATGAGAGC 28602 29 100.0 32 ............................. TTCAGCATCGGAACCTAACGTTATATATATCA 28663 29 100.0 32 ............................. TCCGAGAGGGTTTTTAGGCCAGCTTGCCTTAT 28724 29 100.0 32 ............................. CGGCATGGATCAGATCGTGTCCGTGCCGCCGA 28785 29 100.0 32 ............................. CCCCTTTATCCGCTTGTTTTTGCTTAGCTTTA 28846 29 93.1 32 ...........G..T.............. CCTCCAGCAAGCGGGGATCATAGGGCGCTGAG 28907 29 89.7 32 ........T..G..T.............. ATGTTCGAGGATTTCCAACCATAATTCGTAGC 28968 29 93.1 32 ...........G..T.............. CCTGGAATTAAAATTAAACAGTGGGAGGGAAA 29029 29 86.2 0 .......................AC.TG. | G [29046] ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTGTTCCCCGCATACGCGGGGATGAACCG # Left flank : CAGCTCGATCCATTCGGGATGGGTGAAGTCTCCTGTGCCGAGAAGATCGATGCCCTTATACTGGGCTCCCAACCAGAGGTGCTCAGGGTCAAGATCACGGGAGGTGGCTCTGGAATAACGCGAATGTATGTGTAGATCTGCAATTATCATGGCCATGTAGCCTACCCCGAGACAAGCGGTTTTGGCAAGTCGGGGACTGCTTATTTTACAATTAAGGCTCTGAATAATGCGAGAATTCCGCTCTTTGAAAGGAATTATGTTCCCAAAAGCATAAAACCGTTTTGGATTGGCCGACCATCCTTTGTTAGTAAGGCCGGTTTTGAACCCTCCGGCAAACTAGAAGCAGCCCTTCCCTTTATCAATCCGTCATGGCTGTTGGGTGTTTTTCTGCAAAAAGGACAGTTGATTTGCGAACTTTTCAAGGCCGCTAAACCCGCCCAAAAATCGGTGGCAAAAGAGCCGTCAAAAAAGCCCTGCATTTTCTTATAATTGCTCGAAGG # Right flank : GTTTTTAACCCATTCCGGCAGGCGTTCTTTGGGATAGATGCCGTCGGCTAGAGACTGTCTTGTTTTCTGTGTATGAGCCAATTGCGGATTTGGTTTACGATTTCAATTTTGCACCGCCCGAATTCTTTCGTCAAATAAGATAGCGAATTGATTCATGGCTGCGGTCCAATCCTTTGGCGGCCTCTTCCACTTTTCCGCCAGGCTTTTGATGGCAAGGTAAAGCAGCTTGGCGGCGGCCTGATCATTGGGGAAATGCCCCTGGTTTTAACCGCTTTGCGCAGGCTGCGATTCAAACTCTCGATGGCGTTTGTGGTGTAGATCACCCTTCGGATTTCGTGAGGATAGGACAGGAAGGAAATGATCTGCACCTCTTCCAACACGGCGTCGGTCACTCGCGAAATTAGGTCGGGCGAAACCTGGACTGCGTAAAGCTCCTTGAGATGTGACTGGATTTCCCGGACCGTCATGCCTCGGGCATACAAGGAAACGATCTTGTCGTC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3884-2836 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAC01000038.1 Dethiosulfatarculus sandiegensis strain SPR contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3883 28 100.0 32 ............................ TATGAGTAAAGTTGATGATTTTACAAAAGCCC 3823 28 100.0 32 ............................ GTGTTCGCCCCAATTATTTCACGAGACAATTT 3763 28 100.0 32 ............................ CGGTCATCGACACGGGCAAATTCGAGCGCCCA 3703 28 100.0 32 ............................ TTGGGGTTTTATTAACCAGCGGGCAGGGAGGC 3643 28 100.0 33 ............................ TACCAGTAGGAGATTAGTCTCATTTCAAATGCT 3582 28 100.0 32 ............................ TCCCGGACTGTCGGGGAATCGGATCGCTCTTA 3522 28 100.0 32 ............................ CATTAATCGGGATTAAATAAATTATGGGGAAT 3462 28 100.0 32 ............................ GCAAGCAAAACTTTCATACAGGCTCAGCTTGC 3402 28 96.4 32 A........................... TGGCTAATTCGGCGGCACCCACACTACCCGCC 3342 28 100.0 32 ............................ TCATGGCCTTCGGAGATCAACCAGTTTACAAA 3282 28 100.0 32 ............................ AAAATAGCTGCAAAATGCCCGATTGTTTTGGA 3222 28 100.0 32 ............................ CGACAGCCCTGCATCTCAGTATCTGGCGACCG 3162 28 100.0 32 ............................ GCCGGTGAGCGTCGACCCGTGGCCGCTGATTG 3102 28 100.0 32 ............................ ATCGGCCTGTTAAGCCGGGACTCACCCCTAAT 3042 28 100.0 32 ............................ CTTTTGGAAAAGGTGGTTGGGATTATGAGTTC 2982 28 100.0 32 ............................ CGGTAAGGGTGGTGGCGTGGCTGTGTTTATTG 2922 28 96.4 32 ....................T....... AGCTGGGGCAGGGGCGAGTCATTGAAGCAAAT 2862 27 89.3 0 ..........-......TG......... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.0 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGGTCTCACGCCTCTCAAGTCTGTTGGTATGGCCAAGTACATGTCCAAGTTCGTGCCCGGCATGGATGTGCCCCAGGAAATGGTGAAACGCCTGCAAGAGGCGGGCAAGAAAAACCAGGCCCAAGAGGGAATCAAGATCTGTATCGAGGCCATCCAGGAAGTAAGGGAAATCCCCGGCGTGGCCGGTGTGCACGTCATGGCCATTGAATGGGAGCACAGGGCCAAGGAGATAGTAGAAGGCGCAGGGCTTCTGCCCAGGCCGCAAGTCTAAGAAAAGCCCCGGAGGAGTCAAGCCGGGGGAAAAAGTTTAAATCCGGGCCGCGGCCCGGATTTTTAATGGGGATGATTTGTGAATATGTGATTTATTTTTAACCCTTTTTTTGAGGCCCAAAAAAATATGCGCAATATCAATAGGTTAAAAAGAGGCTTAAAAAAAGGGTTTTTTGGCTAAAAATAGAATATCTTCTTGCAAATTAAGATGTTATAACAAAACAGCTCTA # Right flank : TGAACGGTCTGGATAATTCCCTGTGGAATGAAGATAGTATTGTTTATGAAACCTGTAATTGATAGTTGTATTTTTTCAATGACTTAGTTGTTTGTAGAAAAGATAACGCCTAAAAAAAATAAAAAAATCTTGAATTCGCCTATTTTTATTGTTAATATCCTATTAACAATAAACTAGTATGAGGGGCGAAATGAAAATTGATTTCCTCAAAGATTGGGTTGTCCCAAATATTCCCAAGGATTTTTGGAGATTTTTTGAGGAGCAACAGACCGAAGCTTTCCATAATGCACACCGTACAACTGTAAATAGCTACGAAGAATCAGAATATCTCCAACTTGTAGGTCACGTTAGGCACGCAATGAGCGAAATGGCTTTTAGAAATGCTGCTTCGCAGGCCAATTTGTTAGTCGAATCTTTGTCAACTAATCCTGTGGGTGGAAAATATAGCCTCGCTATAAGAGGGGACTTCCAGTTACTACGTACCAATATCCAGACCCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 225042-220499 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAC01000067.1 Dethiosulfatarculus sandiegensis strain SPR contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 225041 32 100.0 33 ................................ AAGCTGGCCCTGGAAGACATTTCCGGGATAGCC 224976 32 100.0 35 ................................ TGTGATGAGAAGGGGAAATGGAGTGGCTACGATCC 224909 32 100.0 35 ................................ GCCAAGCTGCTACCCCTCCCCATGCACACATGGGA 224842 32 100.0 37 ................................ CGCGACACCCCTGTGTTGTTGCGAATATAGATACCGA 224773 32 100.0 35 ................................ TCGTTATCAAGAAGAGTTCCAACGTAAAACCCTGA 224706 32 100.0 36 ................................ TTAGATAAAAACGACTATGTCATCACTACCCCCGCC 224638 32 100.0 34 ................................ ATGATCGATGCCTGGGTGGCCCCATCCAAAGAAG 224572 32 100.0 36 ................................ ATTATATAGATGGCGGGTGAGTGCCATGGTACACCG 224504 32 100.0 34 ................................ CTGGATTTGGTTGTATCTCTCGTATTTTGCGGTG 224438 32 100.0 33 ................................ CATCGCATTTTATCATACCTATCACCCAATCGT 224373 32 100.0 34 ................................ ACGATAACAAGTTTGTCACCGGCCACGGCAGGGG 224307 32 100.0 34 ................................ ATAAGCCGGGAACAATACGAAACCGACTTAAGTA 224241 32 100.0 35 ................................ ATGGCAAACCCGCATATATCAGCACCCAAATACTA 224174 32 100.0 34 ................................ TTTCCTTTTCGCAACCAAGATATTCGGTGTTTTC 224108 32 100.0 34 ................................ GGCTGCTTGTTTGATGGACATCCCGTATAGATTA 224042 32 100.0 34 ................................ TCCGGCAGCCCATGCCAATAGTCCCAGGCCCGCT 223976 32 100.0 35 ................................ CTGAATAGCATCAGAAACAGCCACGATCTCGTTAT 223909 32 100.0 33 ................................ GGTCAGTGTTAGCAGTGGATACCCGCAATGGCT 223844 32 100.0 34 ................................ TTGTCCAGCTCGTAATATGAGATGCTAGAGTCAG 223778 32 100.0 33 ................................ AGGCCAACCGGTAGTAATGCCTACCGGCCGTAA 223713 32 100.0 34 ................................ ATGTTCTTGCCCATATCCTGCCAATCATCCAGCA 223647 32 100.0 35 ................................ ACGGTGCTATAACCCACTCCGAACCGGCCTGTCTG 223580 32 100.0 37 ................................ ATTGATACTATATTTCGCGGGTGAGGCATATGAGCCG 223511 32 100.0 35 ................................ TGATCTTGTTGTAAGCCCAAGCGGAGATGATTGGT 223444 32 100.0 32 ................................ GAAACGGCGATGGCGTCGAAAATGAAATTTAT 223380 32 100.0 34 ................................ GTAGAGGGAGCGGTGCCGTTTCCTACGGACACTA 223314 32 100.0 34 ................................ ATGTAAAAGCCACCTTGCTGCCCGTAATCACTTT 223248 32 100.0 33 ................................ CAGTTCCGAGGCTTTGACTGATTCCATTGGGTT 223183 32 100.0 35 ................................ TCCTTCAAACCGCTCCCGCACAGCAGAAAGCATGT 223116 32 100.0 35 ................................ TAGTGCCGAGAGATGCGGTGTCGAGCATGGTCGAC 223049 32 100.0 34 ................................ GCAACAAAGTAGCCGGCTACGCAGCGTAACCTAA 222983 32 100.0 34 ................................ CGCGCATGCGGGAATGGGTGGGAGATCGCGTTAC 222917 32 100.0 34 ................................ TCGTGCTTATGTAGTTCCAGTATGGCTTTTTGCT 222851 32 100.0 34 ................................ CTTGAACCTGCCCAGAAAGGTCTCAAGCGCGCTT 222785 32 100.0 33 ................................ AAGTAGGACAGACGGTCAACCGCATTATGGGTG 222720 32 100.0 33 ................................ TCGGGCGTGAGTGATGACGAAGCCGACGATGAC 222655 32 100.0 35 ................................ TGTGACGGTAGCTTGCTGGATTTGGGAGTTTCCCC 222588 32 100.0 35 ................................ TTCCCAATGGACTTGCGCCCATTTTAATATCTGAT 222521 32 100.0 36 ................................ GTTTTGAAATAAACCGGGCATTTGAATCATTAGGGT 222453 32 100.0 33 ................................ ACATTTTGTGCCAGACTCCCCGCCCTCAAGTTG 222388 32 100.0 35 ................................ CCCGCTGGCAAAATCGTCTAACAACTGTTCCAGCA 222321 32 100.0 35 ................................ TGACCAAGGCGAGGGCCGGTATCATAGACGCCGAC 222254 32 100.0 34 ................................ AGCTTGTAACTGAAAATCTTGAACTCAGCCGCCC 222188 32 100.0 36 ................................ CAGCCATGATCCTGCAAATAATCCAGTGCTGCCAAC 222120 32 100.0 35 ................................ TTAGCAGCAGGGGTTACACCAGGTTTTTGTCTCGC 222053 32 100.0 34 ................................ AATAACCCCCACAAAGTCATAAGGAGTGCTGTTA 221987 32 100.0 35 ................................ TCCAAATGGTCGGGCGAGGGCTCCGAGTTGTTGAC 221920 32 100.0 33 ................................ ACAAACTGAATAAGTTAATAAAATAAACAAGTT 221855 32 100.0 33 ................................ CATAAGCTCCGCTGGCAGTGTGAGGGGCGACGG 221790 32 100.0 35 ................................ TAAACACCCCCGCCCAGGCCAAAACTCCCCCCTGG 221723 32 100.0 34 ................................ CCCCCACTGTGCATATTGTCCCTGAGATCGCAAT 221657 32 100.0 35 ................................ CGTGTTCCGGTAGAGCCGCAGGCCCAGCTTTGCAA 221590 32 100.0 37 ................................ CCTAGCTATTAAATCGGCTAACTCTGCGGTGACTGCC 221521 32 100.0 37 ................................ GGAAAACTAATGCAGCGGGAGTTTCTGACCCTGACAC 221452 32 100.0 33 ................................ CAACGCTGTAATCTCTTTCATGCCACCGCACAG 221387 32 100.0 33 ................................ CTCACCCATGACTTGATTAGCTCTTGTGAATTT 221322 32 100.0 35 ................................ CTGTCCTTTCGCGGTATTTGGCCGCCTCCCTGGAA 221255 32 100.0 33 ................................ TCGGCCTGCCTGGCGGGCTGTAGCCGACTACTT 221190 32 100.0 35 ................................ GATAATTATGGGTGCATAAATTGGGAGCCCAAAAA 221123 32 100.0 33 ................................ TACAGAAGGACATCTCCCACACTGACTCCGAGA 221058 32 100.0 34 ................................ TGTGGCTCGGCCTGGCCCTGATCGAGGCGGCGGC 220992 32 100.0 34 ................................ CGGAGCTCCGAAAAGCCAGAAACACACGGGATGT 220926 32 100.0 33 ................................ CCTTACGTTCAAATCCGCCGTCTAAGGCTTCGT 220861 32 100.0 35 ................................ CCTGAGCAAATGCCTATTTTTCTCTACCTTGACTG 220794 32 100.0 34 ................................ ATTTGTGGCTGCCTGCGAGGCTAGCCTTAAGCTC 220728 32 100.0 34 ................................ ATCATTACCTACTCAGGCATACGTGGGCCTGGGC 220662 32 100.0 34 ................................ TTTGATTAAGTATTACCGGTCCGGCGCGGCTAAG 220596 32 100.0 34 ................................ TGTGCTCACCCCAACGCACAACCCAAGAGGGTTT 220530 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 69 32 100.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : GAAGAACTACGCCCTGTAATAGCCGACCGTCTGGTGCTGACCTTGATCAACCGCCGCCAAATCAGCAAAAAGGGTTTTCACCACTCGGAGACCGGAGCCTTTACCATGGATGACGCCACCAGGAAAACCGTATTAAAGGCATACCAGGAACGGAAAAAGGTTGAGGTTATGCATCCATATTTGAAAGAAAAACTTAACCTAGGGCAACTGCCTTTTATCCAGGCGCTTTTGCTGGCCAGACATCTAAGGGGCGATATAGACGGGTACCCGGCTTATTTTCATCGCTAAAACACAGCCTGTTGGCAGAAGGTAAAGCCTCTTGCGCGAACCCCAATCACACATGAAATCACCGGGAGGTTCGCGCAAGAGTTAAGCAGCTGAATAAAAACAAAAAAGAGCAAATACAACCCCAGAAGGGTCATCATGACAAGCTCAAAAAACACAGGTTCGCGGAAAGCGTAATTTTTCTCCTGCAATTTCGGCTTGTTATAATGGCCGCA # Right flank : TGAATACTCTTCAGCGCCTCGATCACGGCCCGCGTATCGCGCCCCACCCTGCCCTATAAATCTCATAATCAAAATCCTTTTCTTTATCCCAATTCATTCAACAAAAGCAATTTTTGGAAATAATTACAAGTAGTAGCATTATTTCATAACCATAAGTATAGCCTTTTATTCTTTATCAAAAAATAAATTAAGAAATATTGACCAGACATGTTGTTATGAGTAGGGTTAAAACGTCTCATGCTCAGAATAAAAAATTTAAAATACCGGAGAATTCTTAACGGAAAAAACTATTAAGATTCTAATGAATATTGCAATTACCTTATTAATTATCACTCCACTTTTATTAATAAAATTCCCGGAAATCAGCACTTTTAGTTCGATCAGCAAATTGATAAAGTCGGCTAGTTTATCTGATAATGAGCCGGGACTCGACTTAAAACTCACAGATATGCCCCTCCGAGCCAAGGACCCTGAGCTGGAGAAAAAGGCCATTGCCGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 230862-232221 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAC01000067.1 Dethiosulfatarculus sandiegensis strain SPR contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 230862 32 100.0 33 ................................ TCTGCGACGACGAGTAAGTAGACAAATCCCCCG 230927 32 100.0 35 ................................ TGGATGCGGGGATATCTAAAGCTATGATCGATGCC 230994 32 100.0 36 ................................ AACGGGTCCTGGCCGCCCACCAAGAGGCCCTGCCCG 231062 32 100.0 34 ................................ CTGCACGTCGGAAGGCAGCAAGGACCAACCGCTT 231128 32 100.0 35 ................................ CCGTTTTGGAGCATCGGGCATGACAAAAGACACTC 231195 32 100.0 36 ................................ ATTTTTGTTTTTTTAACCGCCCTCGATATGTATAAA 231263 32 100.0 34 ................................ CACGGCCAAGTATCCAAGGACCCGAGCAAATTCG 231329 32 100.0 35 ................................ CCCTTTTTTGCCCGCGCCGTCCAGGTCCTGGTGGA 231396 32 100.0 35 ................................ CTTACCGCCGCGATCGTCGGCGAAGACAAAGACGC 231463 32 100.0 33 ................................ GCTAGTGAAATAGTGAGGTAAATATGTGTGGGC 231528 32 100.0 34 ................................ CTGATTGATGACGCGGAGGGCGGCCCCATACCCA 231594 32 100.0 34 ................................ AGGAACGAGCAGGCCAGAGGAATATATTGTTGCT 231660 32 100.0 35 ................................ TTTGCAAAGAGTGTTGTGTTGAAGCTTGATAAAAG 231727 32 100.0 34 ................................ CTGGAAGATCCGGACAGGATTGCAAGTCCCACAC 231793 32 100.0 35 ................................ TGAACGATCAGGCCAGACAGAGCGGTATCCAGGGT 231860 32 100.0 35 ................................ AGGCGAGATCCAAAATCTTTTGCTCTATCTGCAGC 231927 32 100.0 34 ................................ CAGGACTCCGGTGACCGCCGGGGGCCACGCGGTG 231993 32 100.0 32 ................................ CGTAAAACCCGTATTGCTGCACGTCAACACAG 232057 32 96.9 36 ..................T............. TGAAACTGAATAGCTGATACCACCTGCCGGCCACAG 232125 32 100.0 33 ................................ AGCCCCTCAGACGTCGCCAAGTCCAAAATTTCA 232190 32 96.9 0 .............A.................. | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.7 34 GTCGCGCCCCACACGGGCGCGTGGATTGAAAC # Left flank : TTTTTGGCAAGGGGGGATGCATTATGATGGTTTTGGTTTGTTACGATGTGAGTACAGAAAACAAAGAAGGTAGAAGGAGACTGCGAAGAGTAGCCAAACATTGCCAGAATTATGGCCAAAGAGTGCAGAATTCGGTTTTCGAATGCCTATTGGATCCGGCTCAATGGACAACACTTAAAAATAACCTTTTCAAAGAGATAGATACGGAAAAAGACAGCCTGCGTTTTTATTTCCTGGGCAGCAACTGGCGCAAGCGGGTGGAGCACCTCGGCACTAAAATCACCCCAGACCCGGAAGGCCTTTTGCTGGTTTGAAATCCATGCGCGAACCTATAGCGCACATAAAATCCCCGGGAGGTTCGCGCACAAGATAACTGGTTGAAAGAAGGTGAAAAATGCTATTCAAGCCGAAAACGGTGTGTTCTTGAGACCCGCAAAAATAGTAGGTTCGCGGAAACAGCATTATTTTATTTGTATTTTCCCTTTGTTATAATACCCGCA # Right flank : CCTTGTAAGGGTCTTTGGGTGATTTAGGTGGGTAGCCGCGCTCCATTCGGTCGCGTGAAACAAATAAAGACTATAAAGAAGTGAAAATAGGCCGGGGATGAGCCAAGGGGAGTTTGATTTTGAGGGTTTTCACAAAAATAAACCAGGCTGTGGCCAAACAGCCTGGTTATTCCTATAAACCGAAAGTAAGTTTCAATCCACACTACATATTATTGTAGCGACTTGGAAATATTAACATAAAGCTGCCTTTTTGTTCAACTGTCAAGAAACCTGTAATAGATCGTTCGGATCAATCCGGTCTGGCTGGTCTAGCAAAAGCCCCAAATCATCATCATACGCTGTCTGGTTTTCCAACACTGGAAACTGCAGATCCCCGACCCTGCGTATTACTCCCATTTGTTCCAGGCTTAGCATTTGCCAGGGATAAACCTGCACAGTGTAGGGCTGGGCCATGCGGGCATATAAACCGGGCTTCTTTGAATAACATAAACCAGTTACTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 41365-43041 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAC01000078.1 Dethiosulfatarculus sandiegensis strain SPR contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41365 29 100.0 32 ............................. GTGAAGCGCTTTCTACACAGTTAGAACGACAG 41426 29 100.0 32 ............................. GCAAAACTTTGTATGTCTTACATAATCCTCGG 41487 29 100.0 32 ............................. AATGGCCGCTCACTCATTTTTCCGACCACCAT 41548 29 100.0 32 ............................. TTGTTGACTTTTCTCGTCATACCAGACAGGCT 41609 29 100.0 32 ............................. GCAATGGGAAAAAACAAGTGTTGACCTGGCAA 41670 29 100.0 32 ............................. GAATATTTATCGTCACCAAAACAAACCGGCAG 41731 29 100.0 32 ............................. CAATGTATCTTCGTTTTTTAAAAAACGAAGTT 41792 29 100.0 32 ............................. GCCGGGGCTTTGGTTTTGGCCAAGGTCCAAAA 41853 29 100.0 32 ............................. TCATTAGACACTGACCACGCCGTGGAAATAAG 41914 29 100.0 32 ............................. ACATATTATTAGGAAAAACTGAAGACTGGTCG 41975 29 96.6 32 ............................T GGCCAAGAGGTTGAACGTGCCCCTGGTGTGGC 42036 29 100.0 32 ............................. GTTTAAACCTTAAATACAAGCACGCGCTTAGT 42097 29 100.0 32 ............................. ATAACTAGTCCCGTGTTCGTCCTCGCATTCGA 42158 29 100.0 32 ............................. CACAGAACAGGCAAAACGCGTTAGTGGTGAAG 42219 29 100.0 32 ............................. CTTTGCGTTAGCGGGAGCAGGGGAGTGTCTAA 42280 29 100.0 32 ............................. GCAACACATTAGTTAGATCATCGATTTGATTA 42341 29 100.0 32 ............................. CACTTGAATGTTCCCTTTGTCGAACCTTTCAA 42402 29 96.6 33 ............................T GCCACTGGAGCGCGCCAAAGGCGGTTAAGTTCC 42464 29 100.0 32 ............................. TAATAAAATTTGGCAAAAAAGTTTAGTTTTGA 42525 29 100.0 32 ............................. TATACGCGAGAATTCGAGGTATTAATGCCTAT 42586 29 100.0 32 ............................. CCTGAAAGACGGGAAAGCGCACGAACAGACAT 42647 29 100.0 32 ............................. AGATTGGTAAATCCCTTGATCTTACCTGGAAA 42708 29 100.0 32 ............................. ATTATGATGATTACACCTACATCCCTTTATTT 42769 29 100.0 32 ............................. ATATCGTTGAGGCTGCGGCGAATTATGCACGT 42830 29 100.0 32 ............................. GCTGGCAACGCGATCTGAGCGGCGCTGTGCGC 42891 29 100.0 32 ............................. GCTGGCAACGCGATCTGAGCGGCGCTGTGCGC 42952 29 100.0 32 ............................. GCGGGCGATTGAGCCACCAACCACCCGCCAAG 43013 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCGCATACGCGGGGATGAACCG # Left flank : GGCAAACCAAGATTCTAAAGCGAATTATTCCAACTATTGAAAAGGTGCTGGCGGCTGGCGGCCTTAAGATGCCCAAAGCGCCGAAGGATTCTCAAGGTCCGGTCCTGCCGGAAGAAAAGAGTCTTGGCGATGCTGGTCATCGTAGTTGAAAACGCGCCCCCGCGCCTCAGGGGCAGGTTGGCGGTCTGGCTTTTGGAGATAAGGGCCGGGGTTTATGTGGGCAAGCTCTCCCAAAGGGCCAGGGAGATGGTCTGGGACAATGTAGCCACAGGCATTGAAGAGGGAAACGCTGTCATGGCCTGGACCACTAATACGGAACAGGGGTTTGATTTCCGCACCCTGGGCAAGAACAGAAGAGAACCCCTGGAGCTGGACGGTCTTAAACTGGTCTCCTTTTTACCCTTGGAAACCAAGGCAGATTAAGGCCTTAAAAAAGGCAAAATAATCGGTAAAAAAATCGCGTTCAAAAAACGCAATTATTTCAAGTGTTTTTAAGAAGA # Right flank : ATAGCCCTATACCGGGGACTTCTTACCCCTTTCCCTTTTCCCCGCCCATGCAAGTCTCAAAACCCGCACTCCCCCCTCCCTGGCCTGGGCGGCTGGGTAAGGCCTTGAAAGCGGCGGGTGATTGAAAAACATCTTTCCCAAGCCGCCTTTTCGCCCCCGGCAAAAGCCTTTTTGGGCCTATTCCTCGTCGTGGCTGCACATTTCAATGGCGCGGCAGTCCGGGTCGCTCCAGCAGTCGGCTTCGCCTTTTTTGAAAAAGGCCACATAACCGGCCCTGGGCTCATAGATGTACTGCATGCCGCATTTGGAGCAGTCTGCATAGCGGGGTGCAAAGAGGCCGTCGTGCAGGATGGTTTCGGTGTGTTGACAATAGGGGCAGGTAATCTGTAACTGGCTCATGGTTAATCCTCCGGTTGGGGTTACCCCCCTTATTGGGGATTAACCAAATGATTTGCAGGGGTTGTGCCAATACAACCCATAATTGGATAGGTCATTCATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 225798-227205 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAC01000078.1 Dethiosulfatarculus sandiegensis strain SPR contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 225798 28 100.0 32 ............................ AAATTGTTATCCGGTTGGGCGCTCGAATTTGC 225858 28 100.0 32 ............................ CGGAGAAATTCCGATTATTTTGCGAAATTCAG 225918 28 100.0 32 ............................ TATTACACCTAGTAGCCAATCAACTGAAATAT 225978 28 100.0 32 ............................ TCTTACTTCCATCCGCCGAATACCAGCCATTT 226038 28 100.0 32 ............................ ATCCCCCACCCCTCCCTGGGACTGGCGACGCA 226098 28 100.0 32 ............................ AAATGTCGCTGGGAGCAATACCTAATTCGGTA 226158 28 100.0 32 ............................ TGCAATACATACAACATCGCAAACAATTAGTA 226218 28 100.0 32 ............................ CGCCATGTGCCACTTGAGGGCGACGTTCCTTG 226278 28 100.0 32 ............................ AGTACAGACCGGGGGTTGACATTGATCACCCT 226338 28 100.0 32 ............................ TCAGCCAAGTGAGGTTGGCGGCGGCGGAAGCC 226398 28 100.0 32 ............................ TAAATGATATAACAAAAAATACAGCAGGAAGG 226458 28 100.0 32 ............................ GGTGATATGCGCTGGCATAAGTGGGACACCGT 226518 28 100.0 32 ............................ TTCAACCATGCCTGCCTTACGGCGTTTGTCTA 226578 28 100.0 32 ............................ GCATGGGGGAGGGAACCGTGGGGGTTACGGTC 226638 28 100.0 32 ............................ TTTTTGCTTACGGGAGCTAACATGCACAAAAT 226698 28 100.0 32 ............................ TGTGCTTAAAGTCACGGTGATACGCTCCAACA 226758 28 100.0 32 ............................ ATATTCATCTGTCGCTTTATCAAACTCTCTTA 226818 28 100.0 32 ............................ TGCAGCATCCCCAATTCTCCCTTGTCCTTTCT 226878 28 100.0 32 ............................ AGCAGAGACCGTAATCTCATTGCTGTCTTTAT 226938 28 100.0 32 ............................ GTCAAGCGTATTCATCTGAGCATTTGCCATCT 226998 28 100.0 32 ............................ ATTATTCCGCTCTTAATTCCTTAAATGATATA 227058 28 100.0 32 ............................ AATTTCAGATGACGGAACAAATTGGTTATCTT 227118 28 96.4 32 .......A.................... TGTGCTATTTTTAGAGGTGGTTGATTTCTCAA 227178 28 82.1 0 ..........C......TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.1 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGGCGGATATCGACACTCAAGCATTCTTACCTGAGCCAAGGCTTTTTCTTTTTTTGGCAAAAACCGCATCCAGAATAGAAACATATAAAACCGAGCGGAGGGGGATTTGGGCTCTGCTCCGGGCAAAACCCGGACCGCAAACTTCACGATCCTTGGGCCTGCCTGCCGGACGAGAAGGCAAACAGCACCATCTGCTCCCCGCTCCCGGCAAATAACGGATTTGATCGCAAGGAAGTGATTTTCCCCCTGACGGAAAATCAAAAAACAGCCCCAAGCCAATAAGCCGGAGCTTTAATCCAGCCCCCTTCCAAGCCGGACCAGGCCCTGCTTTTCACCCGAAAACAATTGTGAATATGTGATTCAATTTTGACCCTTTTTTTTGGCCCTAAAAAAAGCACTGCAATATCGGTGAGTTAAAAAGCGTCTCAAAAAAAGGGTCAAATTCTCTAAAATTAGGATATCTTCATGCAAATTAGGATGTTATAAGAAAACATCTCTA # Right flank : ATTGCCCTTCCCCTTTGAAACAATGCTTCACAGCCGGTATATCCTTTGGCTGAGGGGGCTTTTAAAACCGCAGATCAAAAAACAGGCTCTACACAAGGCATAAATCGGGCCTTGCCGGTTTCAATTTATCTGCCTTTTTTTTACGGCTAAGGGCTTGAACCGGTTGTCTGCCTGAATAGCACCTCTATTGCCGACCGGGGGGAAGACCATTACCGCACCTCCCTTTTCATTTTGAATTTAAGTGGCCTTTTAAAGGTCTTAAGGAGCTTTGCATGCAAGATCACCAAGCTGAACTCATTGCCAAGGTAAGGGCAGCCATCAAGGACCGGGCCATCTGGTTTGCCCTGCTTTATAAAAAATTCAGTCAGGTTTTGCCTGAAGACCAGGTGGAAAAGCTCTGTCGGGAGGCGATCTTTGAATTTGGTCACATGAAAGGGGCCAGTGATGTAAAGGATTTCAGCCCCCAGGCCTGGGTTCAGAGGCACAAGGACAAGGGCTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //