Array 1 826-186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQVB010000057.1 Corynebacterium belfantii strain 03-11 NODE_97_length_29877_cov_39.153965, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 825 29 100.0 32 ............................. GTGAGCCTATAGCTACTGTCTAGCGGCCATTG 764 29 100.0 32 ............................. AGTGATACGCACCGGCTCATCCACAATCAACT 703 29 100.0 33 ............................. AATGCTGCGTTACTGTTGTCAGTGTCTACCGCG 641 29 100.0 32 ............................. AAGTTTGAAACCCGGCCATACACGCCCCTTCG 580 29 100.0 32 ............................. GTCTCAGCAGCCTCCATCGCCTCCGCGATCGT 519 29 100.0 32 ............................. GTCTCAGCAGCCTCCATCGCCTCCGCGATCGT 458 29 100.0 32 ............................. GCCTCGAAGCCTCCGACCTGCGGCGTGTATGT 397 29 100.0 32 ............................. GTGTTGGTGCCCACGACGGGGAAATCAAACCG 336 29 100.0 32 ............................. GAGAGAACGGTTTCGGTACAGCGGGGCGCTGC 275 29 100.0 32 ............................. AGATCTTGTTCTTGCTCCGCCTCGTGGCATTA 214 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATTCATTCAAGAAAAATAACGGCAGGTATGCTCGAAGCACTAATGGAAGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCATATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCCTTTACGTTGGAAATGTTTCCAAAAATGTAGCTTCAAATTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGGTTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTAATAGCACACTACAAGTCCTTGATGCAGATGGGCTGTCCGTTTTGGCCTCACGCCCTGGACGAGCCGCTGTAAAAATACATGGTCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CCGATTGGTGTAGTGGCTGCGGGGGTTTCTCCGTCCATGGTGACCTCCTGGGTCTGTTGTTTTTTGGATATGAGAAAACCCCGCTCCATGAACTGCTCCCCATTAGTTGGACTGAGAAATCAGTTACCTACTAGTGGGGAGCAGTTGTATGCGTGCACGTAGTTCGTTGTCGGCGGGACAGCGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 36436-33131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQVB010000043.1 Corynebacterium belfantii strain 03-11 NODE_63_length_47130_cov_38.320114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 36435 29 100.0 32 ............................. GCACTCTTTTCATGACATTCTCCTAAAATTCA 36374 29 100.0 32 ............................. CGAGCGACAAGTTTTTTCACGGTCTCAGAATC 36313 29 96.6 32 ............................A AATTGGAAAGCGTTTCTTCAAGCCCACTAACA 36252 29 100.0 32 ............................. TTGCCCCACGAGGCGCGGGCCATATCCGCGTT 36191 29 100.0 32 ............................. CCCACGCGATCCGTAGAGTGGGGATTAGTAGA 36130 29 100.0 32 ............................. TCAGAGGAACCAATGGTTCGTCAACGCTTTAC 36069 29 96.6 32 ............................G CACCGGGGGGACCCGTTATTCCTGCCCGAGGT 36008 29 96.6 32 ............................A ATGAAGCCAAACCCGAAGCACCGGGGGGACCC 35947 29 100.0 32 ............................. TTAATGAACGTCTCGCGCCGCGACGCTAAAGC 35886 29 100.0 32 ............................. CTCAGCCTCAATCGTGGAATACTTCTCTTCCA 35825 29 96.6 32 ............................G TTGACGGCGTTTCCACCGGCGGATGTTGCGTT 35764 29 100.0 32 ............................. CAATACAACGGTTGTTCTATCCGATTCTATAG 35703 29 100.0 32 ............................. CTTCCACGGTGTGTACGAGTAGGCGCGCAGCA 35642 29 100.0 33 ............................. TTGAGTTGATATATAATTGGGGTATAACAACGA 35580 29 96.6 32 ............................G TTTAAAATTTCGGCCCAACGGCCACTGTCTAT 35519 29 96.6 32 ..........................T.. TGCCACAAAGCGGGTTTTTGATTGCCCAGCGG 35458 29 79.3 9 ....................TT.TCC..G CACCAGCGG Deletion [35421] 35420 29 96.6 32 ............................G TGCACACAGCTGGTCAACGTTCCCCTTAAAAG 35359 29 96.6 32 ............................T TCGTGGGCCATGGTATGGAGCCGGTCTGCGGG 35298 29 96.6 32 ............................G CGCCGTGGGGCTCGCCGGCTCCAAATATCGCT 35237 29 100.0 32 ............................. AGCGTTGTCTCGTGTTTTTTCAGCGTCAGTGA 35176 29 100.0 32 ............................. ATGTCACAACGCGCCGCATCATCCGTCATCTC 35115 29 100.0 32 ............................. AAGAAGATCAATTGACAGCCCTCGACCGGTTT 35054 29 96.6 32 ............................G AAGTCTGACATTCAGAATGACAACCTAAAAGA 34993 29 96.6 32 ............................G AAGCTTGAAAGGAATCATATATAATGAATACC 34932 29 96.6 32 ............................G GGATTCATAAAACTTTACCAGCCCGTTGTGAT 34871 29 96.6 32 ............................G CCCCACCGTGAAATCAATCATCACAGGCGAAA 34810 29 100.0 32 ............................. CAGACGCCGCACCAATGTACTGCACCGTACCG 34749 29 100.0 32 ............................. CAGACGCCGCACCAATGTACTGCACCGTACCG 34688 29 96.6 32 ............................G CCTCCAGCTGCGGAAACTGCACCCGCGACTAT 34627 29 96.6 33 ............................A GCCGATCTCCGCGACTGGGCCATGACCGTCAAC 34565 29 96.6 33 ............................A GCCGATCTCCGCGACTGGGCCATGACCGTCAAC 34503 29 100.0 32 ............................. CCATGCCGCAGAGGTCAACGCAAGAAGAATTG 34442 29 100.0 32 ............................. TGCTCGATCTTCTCCGCAGCCTCTTTAGTGGT 34381 29 96.6 32 ............................T ATGCGTGTTGTGGGTAACGCCGAATACGGATT 34320 29 100.0 32 ............................. TCACTTTCGCAGCGGGGCATGTGCCAACCGCC 34259 29 96.6 32 ............................G CAAACCAACTCCGCGGAGCAGCACACCCCAGA 34198 29 100.0 32 ............................. GTTCCGGCGCGCTGGTCGGCCTTGCGATCGTA 34137 29 100.0 32 ............................. CACTACATCAACTTGGTCTTTAGGAAAAAGAC 34076 29 96.6 32 ............................G TATCACCCTTGGCGAGGAGCTGCCCTGCTGGG 34015 29 96.6 32 ............................T ACATCCTCAACCACTACGGCTACACTCTCTAG 33954 29 100.0 32 ............................. TTTTGCTTGCTCTTCGAACTGCTTTTCACGTT 33893 29 96.6 34 ............................A GGCGACGGCTAAGGCCCAGAAGGAATCTGCTGAG 33830 29 100.0 32 ............................. TGAAAGATTTGATCTCGCAGGATGAGGGCTGG 33769 29 100.0 32 ............................. GTTCTTTAATCGAGGTTAGCCCATGATGGCCC 33708 29 100.0 32 ............................. GGAGAATCAGAGCTTGCCGGTAAGCAATTTTT 33647 29 96.6 32 ............................T GTACATCGACCAACGCGACTACGACAAGATCG 33586 29 96.6 32 ............................G GAAACCGCTATCATCCAGCCCCCGCAGCATTT 33525 29 96.6 32 ............................G CAATGATGTGCACGCCCACACTATGCCCCACA 33464 29 100.0 32 ............................. GGGATGAAGCAAAAGTGGGAGAGCGTTAAAAA 33403 29 96.6 32 ............................G AGTCTGCTGAGGTGGAGGCCAAGGGTCCGGAG 33342 29 96.6 32 ............................T GGTCAATCGACTGGCCCGCACCTGCATCTAAC 33281 29 100.0 32 ............................. CGGCCCCACTTTTGCCCAGTGGTCTCCAGCTC 33220 29 96.6 32 ............................T TTTTCCAGAAGCACCGGGGATAGCATCAGTCA 33159 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================== ================== 55 29 97.9 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGTAGAAAAATTGCTGAAACAAAGTTATATGTAGTAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGG # Right flank : TTTAACAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATTTTTGTTGAAGAACGGGTTTTTGGATCTGTGTTTTTCATTCAGAGGAATCAGTAAATGATGGGTCTACTAAAAGATTTTGAAAAAACTAACTTTTAATATCTAAAGAGTGTATTCTGTGGAGAAAGAGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTGCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCTTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTTAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.68, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //