Array 1 1049642-1050890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSRU010000001.1 Escherichia coli strain 190 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1049642 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 1049703 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 1049764 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 1049825 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 1049886 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 1049947 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1050008 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1050069 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1050130 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 1050191 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 1050252 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 1050313 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1050374 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1050435 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 1050496 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1050557 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1050618 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1050679 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1050740 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1050801 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1050862 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1076590-1077593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSRU010000001.1 Escherichia coli strain 190 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1076590 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 1076651 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 1076712 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 1076773 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 1076834 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 1076895 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 1076956 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 1077017 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 1077078 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 1077139 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 1077200 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 1077261 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 1077321 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 1077382 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 1077443 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 1077504 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1077565 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //