Array 1 255-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOD01000018.1 Listeria monocytogenes strain NRRL B-33014 PROKKA_contig000018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 254 24 100.0 42 ........................ GGATTAATCAATTTAACTTCTCTGACTATAAATGACAACAAG 188 24 100.0 42 ........................ AATTTGTCAAACTTAAACAAGCTGGATATTAGCAGAAACCAA 122 24 100.0 42 ........................ GGATTAATCAACTTAACTTCTCTGGCTATAACTGGCAACAAG 56 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 4 24 100.0 42 ATAAGTGATTTAAGTCCCTTGTCT # Left flank : GAGAGTATTTTCTTTTGGAAGCTTAGAATGGATATCTCTCAGATAGATGATACATTTTTTAGTTACTAACTATGAGAGAAAGAGGTAGATTACTAATGAAAGAAAAGAAATATCTCCAGCGACTATTCGTAGCATTAACCATCATCATAGGTATCAACGTATGGATAGGAAGCAGTGGAGAAACAGAGGTAAAGGCAGAAAGTATTACACAACCAACCCCCATTAATCAAGTGTTTCCAGACGCTAATCTAGCGGAATTTATACAGAGGGTATTACAAAAACCCAATGTGTCTGCGCCTGTTACACAAGACGAATTGAATTCAGTGGAGAATATAAGTGCTGATTCTGGGCTATATGACAATATAGCTTCTATAGAAGGCGTTCAATATTTAAATAATTTAACAGAATTGCGATTAGTGAGTTTGGATAATAGTGTAAGCGATTTGCGCCCTTTATCCGGCTTAATAAAGTTGGAGTTTATAAGTTTTTACCATAGCCAA # Right flank : TAATTTGTCAAACTTAAACAAGCTGGATATTAG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGTGATTTAAGTCCCTTGTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 160959-161443 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOD01000014.1 Listeria monocytogenes strain NRRL B-33014 PROKKA_contig000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 160959 29 96.6 36 ................G............ AGTATTTACTTAGACAAACGCGCTCAAATTGAGCAT 161024 29 100.0 38 ............................. ACAGTCAGTTTGTGCTCATTCACTTGAACTGCATCTTT 161091 29 100.0 37 ............................. AGCGCAACAGGTGCCATATACAAACTGCCTTTTTTTC 161157 29 100.0 34 ............................. GTTGGTAGGTTTAACCAAAGATGATCACCATGTC 161220 29 96.6 34 ................G............ ATGTCCCACTGCTCAATTTTTAACGGGACTCCAG 161283 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 161349 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [161372] 161415 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 93.1 36 GTTTTAGTTACTTATTTTGAAATGTAAAT # Left flank : GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGGCAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAATAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTGAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //