Array 1 185253-186407 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPG01000001.1 Clostridioides difficile strain LC3P-056.5-8 NODE_1_length_307310_cov_12.1233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 185253 29 100.0 37 ............................. GTAAAACTGCACTAGGATTTAATCCTAGCATCCATAT 185319 29 100.0 37 ............................. TCAGCATATTCTTCTAGTTCTCCAGCGTCCAGTTTGG 185385 29 100.0 37 ............................. AAAGAGGTGATGTCTAGTTTTAGCTTTGAAACGTATG 185451 29 100.0 37 ............................. TATAATTTATTAGCTTGTTTCAATAATTCTAATTGAT 185517 29 100.0 36 ............................. TCACTAACAGGAACATCAAAAGGAGGTTTAAAATCT 185582 29 100.0 37 ............................. GAAGTTAGAAGAGGAACACACTTACTTTTAACTTTCA 185648 29 100.0 37 ............................. GAATAAAAATAAATCAAAGTTACTACCCCCCAATAAA 185714 29 100.0 37 ............................. ACACTTGAAAATTTATTTTGCAATTCCTTTAAAAAAT 185780 29 100.0 37 ............................. CTTATTTCTAATATATCAAGATAGAAAGAAACTATCG 185846 29 100.0 37 ............................. AAATTCATCAATATAACTACAGAAGGTTTTGTAAATG 185912 29 100.0 40 ............................. ACTTTAGTTGCAGCTGCAAATGCACCACCAACTCCAGCAG 185981 29 96.6 36 ............................A ATCGAATTGAAATATTTATTAGCAGGAGCAAGTTTT 186046 29 100.0 37 ............................. ATGGATGCAGTTTTAGGTGATGCTTATATGGTTCAAG 186112 29 100.0 37 ............................. GATTCTGAGTTTAACGTTACTATAGAATATACTACTT 186178 29 96.6 37 ..C.......................... AATACAAGTGTATATTTGAAATCTAAATATAACTATG 186244 29 100.0 37 ............................. GTAAAAATGGTTTCTTTTAAGGAATCTTTTATGAAAA 186310 29 100.0 40 ............................. CCATATTGGGATATAGTAAAATTTTCAGGAAATGTATATG 186379 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 18 29 99.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATTAAATATCTGTAAATGAGCAGATATTTCATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCGAAAGCAGCAAGCATGTCAGCGGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATCGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATATCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTCAAACTATTTTCAGATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8943-6399 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPG01000037.1 Clostridioides difficile strain LC3P-056.5-8 NODE_37_length_27938_cov_9.96458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 8942 29 100.0 37 ............................. TTTTTCAGCATCTAACATAATTAAAATTCTTTCTTTT 8876 29 100.0 36 ............................. ATAACATACAAATTTTGTGTTCTATATGGCTTATAG 8811 29 100.0 36 ............................. CTGGAATATCAAGATATTGCAAGTATAAGAGGTTGT 8746 29 100.0 38 ............................. TAAAAACGATTAAACCAAAAAACATCAATCTGATTAAA 8679 29 100.0 38 ............................. ATGTATTAACCTGTATGACACATTTTTCCTCATCTTGA 8612 29 100.0 37 ............................. TTATTTAACAACATAATTTTACGTCCTGCATTACTAT 8546 29 100.0 38 ............................. AAAAGTCAAACAGAAAAAGAAAAGATAAATGAGATAGA 8479 29 100.0 38 ............................. AGACTAAATAAATCTGTTTTATAAAAAGCGTTTAATTG 8412 29 100.0 37 ............................. TTTGCTTTAGCTTCTGCGTTTCCTGTCGCTGACTCGA 8346 29 100.0 36 ............................. CAACTTTTAGTCTTTCATCAAGCGCTTTTATTTGTA 8281 29 100.0 39 ............................. TTTAGCATATCAGCAAATCTATACTTATTTACTTTACTT 8213 29 100.0 37 ............................. TGAGTATTGATATAATCAACAATTTCCATATCACCAA 8147 29 96.6 36 ............A................ AGTTTTGAAGAGCAAACAATAGATTTTTACGACTCA 8082 29 100.0 37 ............................. TTTCCATTTCCAACATACACTGCATGTTCTTTAACAA 8016 29 100.0 37 ............................. TCTATTATCTAAATCTATATTGTCCCATCTAAATTGA 7950 29 100.0 38 ............................. AAAAAAATAACTGAAACTTATCATGCAAAAGGTGATAA 7883 29 100.0 37 ............................. GCATATTCTAATAATATGTATCTTTGGCAAGAAAATC 7817 29 100.0 36 ............................. ACTTCAAAGGCTGTGTTTACTATCTCACTATCTCTA 7752 29 100.0 37 ............................. GTATTATTCCAAGTATGAGAAACAGAATCTGACTCAG 7686 29 100.0 37 ............................. GTTTATAAAAGCTGAGGATAAACTTTCTTGTATCTTT 7620 29 100.0 38 ............................. TCTCATGACAATAGAATAAATGTAATAAACAAGCATAC 7553 29 100.0 37 ............................. TATATTTCCCTTTTTGAAAATTCTGAAAGAGGCATAA 7487 29 100.0 37 ............................. TAGGATATAGAACGAAAGGTACGGACGGCAAATATAG 7421 29 100.0 37 ............................. CAACAAGGTTCTGGTGATTTGGTTATTCCAGGTGATT 7355 29 100.0 37 ............................. ACATAACCAAAACTCTCAAAATCAATACCTTTAATTT 7289 29 100.0 37 ............................. TTATCCGCAGTTGCGGAAATAGGAAAAACAACAGAAA 7223 29 100.0 38 ............................. TCAGATTAAACGAGAGTTTGGAGTAGATAGTTATAAGG 7156 29 100.0 37 ............................. TAATTGCATCAAGACCAGGATGGGAGATATGGCGACG 7090 29 100.0 36 ............................. ACATATGTCGCTTCATCAGCAGGAACAGATAACAGG 7025 29 100.0 38 ............................. AGCTATAAAACTATATCAGCAAAATGTGGATGTAGTGA 6958 29 100.0 36 ............................. AGTGAATGTGACCAATTTTGTGACGAATTATCAGAG 6893 29 100.0 38 ............................. TGGTTAAATCTCCAACAGAACATTTATCTAAATTACAA 6826 29 100.0 39 ............................. TAGAAAATAACGTCAGTAGTATTAGCAGGTAAATCTAAA 6758 29 96.6 37 ...............T............. AACACTTTAAAAACTAATGTATTCAGTATAAGAGATT 6692 29 96.6 37 ...............T............. CTTGTTAATGCAAATAAACAACATAGCACTATTAATA 6626 29 93.1 38 ...............T.C........... AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 6559 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 6493 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCTCTTTGAAATTT 6427 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 39 29 99.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAACTTTTTTATCCATATCGTTTAAAAGATGAGAATATCTATTTATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGATATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTAGCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATACATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAAATTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 64931-67519 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPG01000003.1 Clostridioides difficile strain LC3P-056.5-8 NODE_3_length_234127_cov_12.6013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 64931 29 100.0 36 ............................. TCAATTGATGGCACTTGTGTTTGTATACCACCTTGT 64996 29 100.0 36 ............................. GTGAAATTAGATTTCATATTGTTTAATCTATTTTTT 65061 29 100.0 37 ............................. AAATACATAGCATTTTTGTAGAAAATTTTATATACTT 65127 29 100.0 37 ............................. TTATTTTCAAACTTTTTTTCATATCCTCTGCTACAAT 65193 29 100.0 37 ............................. TTTCCTAATGAACCATGGTATTCTTCTGTGTCGTAAC 65259 29 100.0 35 ............................. GAAGATGAAAACGACAAATTAGAATGGGAACAAAA 65323 29 100.0 37 ............................. CATGAATAATTTATCTTGCGTTCATCTAGTAATAATC 65389 29 100.0 39 ............................. TCTTTTACACCTCGATTTGTAAATCCTAAATCAGAAATT 65457 29 100.0 37 ............................. TAGATTTAGTCATATACTTAAAAACTTCATAATAAGA 65523 29 100.0 36 ............................. TTTTTCTATTCCACCAAAAAAACCACCAATGCCATT 65588 29 100.0 37 ............................. ATGATTTTAACTATTTCGGTGTCCTCTTTTAAAGACT 65654 29 100.0 36 ............................. TTTATCCTTCTAATTTTAAATTTTAGAATTTTAAAA 65719 29 100.0 36 ............................. ACGCTAACGCAAATAATTCTCCTAGCTGATGTATTA 65784 29 100.0 36 ............................. CGCCTTTTATGTGAATCAAGAATTTTTTGATTAAGT 65849 29 100.0 38 ............................. AAATTTGTAATATTATATAATCATCCTAAAACAAAAGG 65916 29 100.0 36 ............................. ATAATGTATTAGTGAGTAGAGTAAAAACAAATTTCA 65981 29 100.0 37 ............................. TGAATCTGACGAACTCTATATAAAGCAAAAAATAAAG 66047 29 100.0 36 ............................. CGAAGAGTTTTTTAATACTTCTTTTTCTTTTTCCAT 66112 29 100.0 37 ............................. AATTTTCTATGTTGAGTATAAAAATTTATCCAACCTA 66178 29 100.0 37 ............................. TTTTTGTTATAGCCATGTGTAGCGTATGTACCCGAAC 66244 29 100.0 37 ............................. TTTTTTAATAAGCTATGACCTACTGATAAACATATTT 66310 29 100.0 37 ............................. AATTTATTAGCTAAAATTCTTCTGTTATTAAAGCTAG 66376 29 100.0 37 ............................. CCTGTAGCACCTTTTATTATATTCTGCACTGAACCAC 66442 29 100.0 36 ............................. TTGTAAAATCAGCGTTATTTTTTTATGATGGATATA 66507 29 100.0 37 ............................. TAACCTCTTTTGTTAGTCCATGAACTTTTGCCTTTTC 66573 29 100.0 37 ............................. TGTAAAGAGAAAAAAACAAAACTTTAAAATTTTCATA 66639 29 100.0 37 ............................. AAAGTAAACCCATGCACAACATAATTTTTAAATAAAT 66705 29 100.0 37 ............................. ACATATACATGCAAGGTAGTTTCTTTTTTTAATGTAA 66771 29 100.0 38 ............................. AGATTTAAAAAAACAGGTACTAAACAACCTGCTCTCAC 66838 29 100.0 37 ............................. GGAAAAATATGGGAAAAATTAACTAATATAATGCAAA 66904 29 100.0 37 ............................. TTTAGATACGCAGAAGAAGAAATTATAAGTTTAAATG 66970 29 100.0 37 ............................. GTGGGATTTTAAAGTATGCAAATAAAGGTCTTTCAAT 67036 29 100.0 36 ............................. GGGAGCGCAAGCAGGGCTAAATCAAAATGACGACAT 67101 29 100.0 36 ............................. ACGAAAATTAGAACTACCATATTTACTGTAAACTAT 67166 29 100.0 38 ............................. GACATAAAAAACACCCATAATGGAAATCGCAATTGGAG 67233 29 100.0 34 ............................. CTTGATAATATTTCAGCATATGATACTGAAGATG 67296 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 67362 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATTAATGAGTATTTAGAAACTT 67427 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 67491 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 40 29 98.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACACAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATATATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : TAAAATACACTTACCTACAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAGTAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAACTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 57895-58710 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPG01000004.1 Clostridioides difficile strain LC3P-056.5-8 NODE_4_length_202630_cov_12.0567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 57895 29 100.0 37 ............................. TTTACTCCTTGTATAATGTAATCACCTTTGTTAGCTC 57961 29 100.0 36 ............................. CAGTTTAGACAAGCTTTCAGACGACTTCGGCTTGAC 58026 29 100.0 37 ............................. CTTTCCAGTTCGACACTTAATCATATCTAATATTAAA 58092 29 100.0 37 ............................. ATTTTAAAACCTAGATTGTATAGCTCTTTATTCAATT 58158 29 100.0 36 ............................. ATCTTCTTGTTTGTTCTCTTGATTTTTCCGCCAAGC 58223 29 100.0 36 ............................. TCTCTTAGTCTTGTAAACATGTCGATAGCTGCTTGT 58288 29 100.0 37 ............................. CTAATTTTAACTGGCTTTATGCAACAATATAGGGCTA 58354 29 100.0 36 ............................. AAATTGTAAGAGAATCTTTTGATACTTATATAAAGT 58419 29 100.0 37 ............................. AATCCAAATCCAGATTGGGGAAACAATGATAATGATG 58485 29 100.0 37 ............................. GATAAAATTGAATTTGGCTTTAATGATATATCTAATT 58551 29 100.0 37 ............................. CCAGATATTGAGATAAAACCAGAACCACCTAATCCAA 58617 29 100.0 36 ............................. TCTTCATATTTATTCATGTATTCAATGATAGCATCT 58682 29 89.7 0 .......................GC.G.. | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 99.2 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TTAAATTGTACTATATTAGTTATAAAATACCATGCTTATATTATGTGTTTGAATTAAACTAAATTAGTTGAGATATTAAGAATTAAAATGTTAATATAAGCAAGTTATATTAAAATATATAAAAATCATATGATAATATTTATATATTTTAGATAATGAAAAAACTAATTAAGGACATAGACATGTTTTTAATAGTTTGTATTTTGAGTATAAAAGATATTGATTGTTTAATTAATATCTTTTTATATTGTTATCTTATATCAAAAAGTATGTAATAATTCTATTTAGATATGTTTTTAAATTTATTATGTCTTAAACATAATATTTAGTAGTTTTGGTTTTGCAGTGAGCGAAAAAATTGCATAAATGGCTGTAAATTAGTGATGGCAAAGATTACAACTGTATTTTTGATTATACCAAAAAACACTACTTAGCGCTCACTGCAAATTATTCATTTTAATAATACTATAAGTATTGGAATTACTGTAGTTTTATTTGGG # Right flank : TATACCAGAAAGTATATATAAAATTATGTGTAAACTATATTGTTATGAGTACAAATAATATTTACCTATTCATTAAAAAACTTAACTAAGAATTTGATTTATATTATTGAAGTATCAATAATTTTGGAAAGTAGAAAATTATACCCCAATAATACCCCAATTACAAAAATAAACAATAAAAAATAACCAAAAAAATTGCTTCAACATCATGACCAAATAGCTATATACCTACACTTACAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTATCCACCATTGAAATCCACGAATACCTATATCCAATTGGATATAGGTATTTTTATACATTTTTAATTTAAATATTATTGATAAATACATTTAAAAAGTGTTAACCTAAAGTGAATAATCTAAATAAAAATACAATACTAGGAGAGGTCATCATTACAATAGCAGCTTGTGATGATGAAAAAGAAATACAAATCGTAATAAAAAATCAAGTTGATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 98770-97153 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPG01000005.1 Clostridioides difficile strain LC3P-056.5-8 NODE_5_length_198781_cov_11.3973, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 98769 29 100.0 37 ............................. TTTCATCAAATTATCAAATTAAACTATATAAGTTAAA 98703 29 100.0 37 ............................. AGAGAATGCTTAATTAACTATAGAAGTGTATTGGCAG 98637 29 100.0 38 ............................. TCCTTTTCAAATTTTACAACATCAGAAGTTAAAATATC 98570 29 100.0 37 ............................. CTAACTCTTCATTTTATTAAATATAAAAATTAAACAA 98504 29 100.0 35 ............................. AATTTATCCTCTAAATTTAAAAAAGGACTATTAGG 98440 29 100.0 38 ............................. AAAGACAACGACTCATTCTTGGTATTTGACATAGAAAA 98373 29 100.0 37 ............................. AGAAATATCAGAATTTTGTGGGCTTGGTTGGGAGATA 98307 29 100.0 38 ............................. AAAAACAAAAAATCCAACTTTAGATTATTATTTTGATT 98240 29 100.0 36 ............................. ATACTCATTATTGTAAAACATATAATCACCTCCTAT 98175 29 100.0 39 ............................. GCCAAACAACTTACTTAAACGTTCTTGTTCTGCTTCTAT 98107 29 100.0 37 ............................. TATAAAATTCTTCTTCTGTAAAGCCTTCTTTGAGTCT 98041 29 100.0 38 ............................. TAAACCACATACACTTTTTTAAATGCAGCACTACCAAA 97974 29 100.0 37 ............................. CTCTTTTTGAACACAGATTGCTTTCTCTTGCTAAAAT 97908 29 100.0 37 ............................. CTGGGCGTTTCTGTTTTTTCAAGAGCAGTTGACTTAA 97842 29 100.0 37 ............................. CGACAAAATTAACTATAACCTCGTAATTATCTAAGTG 97776 29 100.0 38 ............................. ATAAGTTACAGCAGTAAAAAGACTGACAGGAACAAATC 97709 29 100.0 37 ............................. AATATTAATTATATAATAACAGAATAAAATAAAAAAG 97643 29 100.0 37 ............................. CTAGAGATAAGAGGTTTCTGCTTTTTATTTTCTTCTG 97577 29 100.0 37 ............................. AACATTCTGCTTACATCTGATAGAAAAAACAGTTCTT 97511 29 100.0 38 ............................. CATTGAATCTGCTTATTAATACTATATTTACATACTAA 97444 29 100.0 37 ............................. TTGATAAATATACACCAGTAGAAGATTAGATTAATAG 97378 29 100.0 37 ............................. CGCTTATAATTTTTAATTGCATATTCAATAAAAAATT 97312 29 100.0 37 ............................. TATTCTTTTGCCAACTTTATTCCATTATTCAAATCTT 97246 29 96.6 36 ............................C TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 97181 29 86.2 0 ................G....T.CA.... | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 99.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAATTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGCTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTATTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 18337-18697 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPG01000006.1 Clostridioides difficile strain LC3P-056.5-8 NODE_6_length_198466_cov_11.7552, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18337 29 100.0 37 ............................. TTATTTTGGGATATAACATATCCATAATTTTACAAAC 18403 29 100.0 37 ............................. CCACCTGCATTGAAATGTATTGATATGAACCAATCTA 18469 29 100.0 38 ............................. ACGCTTCCTACTTTTGAAGTTCATAAAGATGATTTAAA 18536 29 96.6 37 .......................A..... AGCAATTCTGATATTTTTATTCTAATCATTTGAAATC 18602 29 100.0 38 ............................. CCGTCTTTTGTTGCTTTACATAAATTTATATTACTTAT 18669 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 97.7 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAGAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGT # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCCTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTAATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATTTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 98051-98342 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPG01000006.1 Clostridioides difficile strain LC3P-056.5-8 NODE_6_length_198466_cov_11.7552, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 98051 29 100.0 37 ............................. GAAATAGCGAGAATTATTGTGTCTATAGGAGCGGTAG 98117 29 100.0 36 ............................. AATTTAAAAAAGTGTATTTATAATATTTTTAAACAA 98182 29 100.0 36 ............................. TTTATTTTACTTGTAATTCCTCCAAGTATACCACTT 98247 29 96.6 38 ...............A............. CAGATGAACGTAATAAGTTCGCTGAAATGGAAGCTAAA 98314 29 86.2 0 .....................C.AA...T | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 96.6 37 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAAGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTTGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATAATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTACGATTTTTTATATACATTGGATGTAATCATTGAAATTACTACGATATAAGCATATTTTGTAATATATCAAAAACATTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGAACTGGAAATGCTTAATTTATTTTGGG # Right flank : TTGAATAAACGCACAAAACATCTACTTAAACATATAGGTGTTTTTAGTGTAAATATTTTTAAATAATTGGATAAATTTCCTAAATCAATAGACTAAATTATTAATTTTAGATAGAATTATATTTGAATAAATAATTTAATAGGGGAGATTATATTATGAAATTAACAAAAAAAGTATTAGTTTTGAGCATAATAGCATGTTTTTCTGTAATGATGTTTATGACGGGATGTACTAGTTCACCAGAACCTAAAATGGAGGAAGCTGGTCAAGAAATACCAAAAGAAGAGGAAGAGATACCAGAAGAAAGCATAGATAAAGATAAATTAAATCCAGAAGAATTTTTGGGTTGTCAAATTAAAGAGTTTAAAGATGGTTGGCATGCATTAGGGCAGATAGAAAAAAATGTAAATGATGGAAAAATGACTAATGATAATTTAAAAACAGTGGCTGACTTATATGAAAAGCAGTTTAGCACTTTGAATGAAGAAATTGAAAAGTAT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 118837-119987 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPG01000007.1 Clostridioides difficile strain LC3P-056.5-8 NODE_7_length_179405_cov_11.7166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 118837 29 100.0 38 ............................. AATATTCTACTGTTTTAGTTTGTTTTCTTAGAAGAAAA 118904 29 100.0 36 ............................. TTGCGCATGAGATAAAGACATCTAAAGATAAGATAC 118969 29 100.0 36 ............................. AACATAATTATAACATAGGAGTTCATTAAATGAAAA 119034 29 100.0 38 ............................. TGTGTTGCTGTCATACGAGGTAACATTTGTCTGTTTTC 119101 29 100.0 37 ............................. TAGACTACTTTACAAATAAACTTAACGAGTACAATGA 119167 29 100.0 38 ............................. TGTGTTGCTGTCATACGAGGTAACATTTGTCTGTTTTC 119234 29 100.0 37 ............................. TAGACTACTTTACAAATAAACTTAACGAGTACAATGA 119300 29 100.0 36 ............................. ACAACAGGAACATCAACTGGTGGGTCTATTGGAGGG 119365 29 100.0 37 ............................. AGCAAGATACTGCAAATATTTATATACACCAAACATT 119431 29 100.0 36 ............................. GAACATTTAAAACATCAAATACACGTTTAAAATCCC 119496 29 100.0 37 ............................. CTAATAAGACTAATAACATCTGAATTATTTATATTTA 119562 29 100.0 38 ............................. TTGAAATTACTTACATATAGGTCTATTTAATTAATCAT 119629 29 100.0 37 ............................. TTGAAACTTACTACACCAGTTTTAGTAGTTCCAGCTA 119695 29 100.0 37 ............................. ACAGCAGTAGCAACACCCTCTTCAGCAGCAAAACAAG 119761 29 100.0 36 ............................. AAAGTAAATCCTAGAGCATAACCAATTTTCGTAGGC 119826 29 100.0 38 ............................. TAAACTGTTGGTTCTACTGGTGTTTCTTCTTTATTTAA 119893 29 96.6 37 .......................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 119959 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 98.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGTTCTTCTTATTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAATATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 168948-169637 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPG01000009.1 Clostridioides difficile strain LC3P-056.5-8 NODE_9_length_173852_cov_12.1144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 168948 29 100.0 37 ............................. TTGTAACTTCTTTATTTTTTTTATTCAAAAATGCTGA 169014 29 100.0 38 ............................. TATAAATTAGCCATTAAAGAACTATTTTTAACAACATC 169081 29 100.0 37 ............................. AATATTCTACTGTTTTAGTTTGTTTTCTTAGAAGAAA 169147 29 100.0 37 ............................. TATTAAAATAATAACTTTTCTATTTTTATATGATTAA 169213 29 100.0 38 ............................. TTAATTAACTTTTCATTATTTTTATTTATGTTGCCTTC 169280 29 100.0 37 ............................. TATAAATTTCATTATTTTTAATTCAGCTTGAGGTATC 169346 29 100.0 37 ............................. TCTTGCTTTTCTATAACTTCAACTTTCCCGTTAGAAG 169412 29 100.0 37 ............................. GAAAAGCTTTGAGAGAAATATGCAAAGTAGAATCAGC 169478 29 100.0 36 ............................. TCTATCTTTGAATAATAAGACTTAGATATGCCTATT 169543 29 100.0 37 ............................. TATAAGCTATCTCATTGAGTGAATCAGCTATAATCTG 169609 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TTGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCTATTTTATCTCTAAATATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //