Array 1 138153-140960 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFB01000003.1 Lactobacillus psittaci DSM 15354 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 138153 36 100.0 30 .................................... TGGTTTTAAATTTCGATTTCTAATCACACT 138219 36 100.0 30 .................................... CATTACTACAAAAGAATGTAGCTGGGATTA 138285 36 100.0 30 .................................... TCTTCAGCTACTGATGTAGGTACTTGGTAT 138351 36 100.0 30 .................................... CTATCTATCTTTATAGTTTATAGTTTATAT 138417 36 100.0 30 .................................... CACTGGATAGTCATCGTGTTCGTAGTAGTC 138483 36 100.0 30 .................................... TACTAATTTGACCACGAAGAGCTACAGCAT 138549 36 100.0 30 .................................... TCAGCTGTTTAAAATGGAGAAGCCAGAAAC 138615 36 100.0 30 .................................... CTGTGCTGATAGCCATAGACTGAGCCTATC 138681 36 100.0 30 .................................... TTAAATTATAATTTTTAAGGCTTGCCCTGT 138747 36 100.0 30 .................................... TTCAGAAAAAAGCGACCAAGTGGAACGCGA 138813 36 100.0 30 .................................... GTTCCAGGCTTATATACATATGGACGAATT 138879 36 100.0 30 .................................... ATTGTAAACGTACCGCAAGATTATGTGGAC 138945 36 100.0 30 .................................... TAACACTTTAGACGACGATTACTACTAAAA 139011 36 100.0 30 .................................... ATTTAAATTCTAGAAAGGACCTAAAATTTA 139077 36 100.0 30 .................................... GTCTGTTTAGCTGGTTGTTCAAGTACTGGG 139143 36 100.0 30 .................................... ATTGCGGAATTGATTTCAAATAGATTCATG 139209 36 100.0 30 .................................... TATGTCATGAAAAAAACAGCTCTTTTGCTT 139275 36 100.0 30 .................................... ACCAACCAAGAATTTTAGTTCCTGGCGTTC 139341 36 100.0 30 .................................... AGGCACCAAGTACTGCTTTGACTGCTTAGA 139407 36 100.0 30 .................................... TTACTAGCATCTTGAGTGTCAGGAGGTACA 139473 36 100.0 30 .................................... GTCTAATTCGAGACAGTGAAAAAATTGAGG 139539 36 100.0 30 .................................... AATATTTTTAAATTGTAAAGCCCTATAGAA 139605 36 100.0 30 .................................... ATGGGCTAAGTTAGTTGATAGTAAGTTTGA 139671 36 100.0 30 .................................... AAAATAATCTTTGGAAGGACTACTTGAAAT 139737 36 100.0 30 .................................... CGTTAAGCAAACCATGCAGGCTATGTACAA 139803 36 100.0 30 .................................... TAATTGTTACAAAGTGTGCTACCTGTTCCT 139869 36 100.0 30 .................................... AACGGTATTGTTTCAGCAGTTGCTCCGATT 139935 36 100.0 30 .................................... CGAAGATGGTGAAGTTGCTGCAGTGTTAGT 140001 36 100.0 30 .................................... AAGCTTCATCTTGCTTTGGTCATACTCGAT 140067 36 100.0 30 .................................... CAGGCTCAATGTTTGAAAGAGTTAAATCCA 140133 36 100.0 30 .................................... CTTAGGTCAATTCTTTGGCAATTTATGGAA 140199 36 100.0 30 .................................... AGCGGCTCTGACCCCGATGCTACGGCAACA 140265 36 100.0 30 .................................... AATTGATGACTCTCATGTAATCATTCGTGA 140331 36 100.0 30 .................................... CTTAGGTCAATTCTTTGGCAATTTATGGAA 140397 36 100.0 30 .................................... AGCGGCTCTGACCCCGATGCTACGGCAACA 140463 36 100.0 30 .................................... AACGGTATTGTTTCAGCAGTTGCTCCGATT 140529 36 100.0 30 .................................... CAAAGATGGTGAAGTTGCTGCAGTGTTAGT 140595 36 100.0 30 .................................... AAGCTTCATCTTGCTTTGGTCATACTCGAT 140661 36 100.0 30 .................................... CAGGCTCAATGTTTGAAAGAGTTAAATCCA 140727 36 100.0 30 .................................... CTTAGGTCAATTCTTTGGCAATTTATGGAA 140793 36 100.0 30 .................................... AGCGGCTCTGACCCCGATGCTACGGCAACA 140859 36 100.0 30 .................................... AATTGATGACTCTCATGTAATCATTCGTGA 140925 36 94.4 0 .............................C.....T | ========== ====== ====== ====== ==================================== ============================== ================== 43 36 99.9 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : AAGAATGCTTGAATAATTACTTAACAAAAGTAATGACGATGTTATTTGATGGTCTTGATGAAGAACATCGAAATCAGATTTTTAATACATGGCAAAAACTTAATACTGATATTCAAGATGCAATATTTATGTCCGATTTACCAATAGAGGTTGGAAGTAACAATGTAGATATCAAGAAGCTATTTAAATTTGATGGGATTCACTTTGATAATTCCGTATTGTCTGATCCTTATGATATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAAGTCAGCTGTTGCTTTTGCTAATGTGAGTCATTATCTCACTAAAGAACAGCTGCATAACTTAATTACCTTCATAAACGAAGTTAATGTACCTCTGATATTAATAGAATTCTCATCTCCAGATTTTCAGGTTGTTAGTGGGGATGTAAGTGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTTAGAAACCGATGATAAAATGTCG # Right flank : TTTAAAGGAGAAAACAATATGGAGTTAATAAGATATCTATTGATTTTAGGACTTAGCTATATAGGTGTAACGCTATATTATTATATTAAAGACAAGCGTAAAAAATAGCATTTTTTATTGTTAAAATAATGTATTTTGATTTATAAAGGGTTGTTAAATTCATTAAAAGGTTTAACCTATAGATGGTTGGTATAAAGATTAAAAATGAGGTGTGCAATGGTATTAACTAATGCAGAAAAGCAGCGGCGCTACCGCGAAAGGCTTAAGGCCAAGGCTGCTAAAGGTGATATAAAAGCAGTAGAATTAATTAGGCAGGACAAAAAAGCACAATATTTCAGAAGTGCAAAAAGTTTTATTAAAAACCATGCGACTTTGGAACAGTTAACTGTTTTGCGTGAGATAATTTTGAATCGTGAAAAATATTTGAAAGAAAACAATAAATAGGGAAATAAATGGTAATGGTTCAATCAAATTCTGAAGCAAGTAAAAGATATAGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //