Array 1 10248-9418 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKM01000044.1 Rhizobium terrae strain NAU-18 Scaffold44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10247 32 81.2 35 .AATA.G.A....................... CACGCGATGAAGCGCACGAGCGCCATGTATTCGTC 10180 32 96.9 34 A............................... CCTTGAACCACGACTCTTCGACGCCGACGAACTC 10114 32 100.0 35 ................................ ACCCGAAACCAGAAAGAGCAGATCGTCGAGCGGTC 10047 32 100.0 35 ................................ ATGTGGGGCGGGGACGGTCGTCCGCACCCTGCCGA 9980 32 96.9 34 ...............C................ CCAACCAGCGAAAGGAAAGAGCATGCGCATTTTC 9914 32 100.0 35 ................................ ACTGTATCAGTCCCCTTCTAAAGCACTCACCGACG 9847 32 100.0 35 ................................ CTTTCGAGGAAAACCCGTCTGCATGGTGCCATGCC 9780 32 100.0 34 ................................ AAGGAAGACGTGTCCATTCGCTGGCCGATTATTG 9714 32 100.0 34 ................................ GATGGGAACAGGCCGATCGGTCGGGTTTTTCAGT 9648 32 100.0 34 ................................ CTCTGTCAGAAATTCCGGATGGCGGGATGGCGTT 9582 32 96.9 34 ..................A............. AGCATGTCGGGCATTGACGCGGCCACGGCTTCAG 9516 32 100.0 35 ................................ CATTGCGTCTGGCGCAACCTGAAATGCAACTACGC 9449 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 97.8 35 GTCGCCTCCCTCGCGGAGGCGTGGGTCGAAAC # Left flank : ACATCAAACAGACCCAGGATCAGTCCGAGAAATGGCCGCCTTCAAATCGGAACGCCGGCCGGAATGAAATCGGAATGACTGGCCGGCTTCAAATCGGAATCGATGGCCGGCTTCATC # Right flank : CATGTCGCGATACGTCGGCTGGAATTCCTCGTTGATCGTCGCGCGGCAGGCGGGGGCTAGCAACACCCGATTCCTGCGATTGATCGAGCGCGCGATACCAAAACTGACAGCATGAACAGTTATTGGCGTCGGTCTTGAACCATTTACGAACCTACAGCACGCAGATCGACACCACCGTCATGGGGACCATGGATTGATCACTTTCAACCCAGCGGCTTCGAAAGGGCTTGTGTCACGAGTTGCAACCGCGAGGCCGTTTGCTACTGCTGTGGCTGCAATATAACCATCAGTCTTGCTGATCGCTTTCCCGGATACTCGAGCGCGGGCCATCAGTTCCGAGTAGAACTGTGAAGTCGCCAGATTGAAAGGCAGGATGCGCTCCGAAAAGTGCGGAAGCACTTCACCCTCAAGGCGATCGCGGAGGATAGTTTGCGGTTTCCCCGAGGGCATAGCCGCGATCCCAAACCAAAGTTCAGCAATCGTTATAGCGGAAAGGAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCTCGCGGAGGCGTGGGTCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCCTCGCGGACGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 271783-279471 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKM01000010.1 Rhizobium terrae strain NAU-18 Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 271783 32 100.0 35 ................................ CTGTTAAGGTTGCGGTGCTGACCGGCGCGGCAACG 271850 32 100.0 35 ................................ AACTGGGTAGCGTGGATTGTCGCTGATAAGCTGAG 271917 32 100.0 35 ................................ TCTTTCCATTCCCCGGCATCGCCGCCGCCTCGCCC 271984 32 100.0 35 ................................ CTTTGTAGTGACTTGTTGAGGGTTCCTTTTTCGAG 272051 32 100.0 34 ................................ CTGATTGGACTGGCGCAGCGCCGTCTCCAGGTCG 272117 32 100.0 33 ................................ TCGTAACCATGTTAGGACTCTAGTTGCCTTCGC 272182 32 100.0 36 ................................ TCCAGAGTTTCGTAGCTCAGCGTGGTTGAGTAGCCG 272250 32 100.0 35 ................................ ATAGGCCCGCTTGTTGATCCACGAGGCTGCGAGGG 272317 32 100.0 35 ................................ ACTCTACGAGGAAATTCTTGCCTCGATGCCCGACG 272384 32 100.0 36 ................................ ACCAACGGAGAGTAACACCATGACCGTCTCTCTCAG 272452 32 100.0 34 ................................ ATCGAATTGGTGCTAGTGACCAAAGGCGACCTTG 272518 32 100.0 36 ................................ CGGGGTGAACAGCGCGGCTCGGGCGGAATACCAGAC 272586 32 100.0 36 ................................ ACCGGTTACATCCGAGATATCGTCCAGGGGACGGAA 272654 32 100.0 34 ................................ AGTTTCCAGGAAGCCGAGTTCTCGCTTCCAGGCG 272720 32 100.0 34 ................................ GGTTTAAAGGGCACAAGCTCCGGCAGGACGCTGG 272786 32 100.0 33 ................................ CACGAATTTGCCGAGCTTGCCTTGCGTCTCGGT 272851 32 100.0 35 ................................ CGTGTTGTCCTTCTGGCTTAGGCTACCGCCGTGAC 272918 32 100.0 35 ................................ AACGAATTCGACAAGAACGTTGTCCTCTTCCGAGA 272985 32 100.0 33 ................................ AAGTCGGCGTCAATGAATAGGTAGCCCTCGGGT 273050 32 100.0 34 ................................ CGTCTTTCGACATGGATGATCTCGGCGTGAACCT 273116 32 100.0 35 ................................ AACCATCTACTATGAGTATTATATTACTCTGTCCT 273183 32 100.0 34 ................................ ATGTCATCGTCCCATAGCTGCTGCCCCCGAAGGT 273249 32 100.0 35 ................................ TGATCCCTCTCCATTCCCTTGGTCATCTGATCATA 273316 32 100.0 34 ................................ ATCTGCGATTCGCCGGGGGGTGAAGTCTCCGGGT 273382 32 100.0 35 ................................ TCTTCAATAGCCTTGCGTATCCATTTGTTCAAAGA 273449 32 100.0 35 ................................ TTGATGTAGGGCACGCCGAGCCTAGCTGCCGCGAC 273516 32 100.0 35 ................................ AGATACCCGGTCTGCTGGGTGGTGTTGCGGCGGGC 273583 32 100.0 35 ................................ GTCAGATGGCTGAGCTTGTCGCATCGTATGAAGCT 273650 32 100.0 34 ................................ ATCACTCCCCTCCCTTGTCTCGCTGTTGGGTGGG 273716 32 100.0 35 ................................ TACGTCAATGCGATCCGGAACGCTGCAATATCTGC 273783 32 100.0 34 ................................ ATCTGCATTTCCATCTCTTCCGGAGATGGCTTGT 273849 32 100.0 36 ................................ GGTTGTCTCGGCGGTGAGACCCTTGGCCTTGGCAAC 273917 32 100.0 33 ................................ TGCCGCCGAGCGGTGGAGACGCCCTGTGCCTGG 273982 32 100.0 35 ................................ GTCGCGCTGGTGGTAAGGCGGCGTCGAAGGCGGCA 274049 32 100.0 33 ................................ ACGCCGGAAGAAAAAGCCTTCGTCGAACGCGTC 274114 32 100.0 34 ................................ ATGGAGCACCTCGCACAACGTCGACGGCCGCAGC 274180 32 100.0 34 ................................ GTCCAGCAGAACTACCGCCTTCAAGGCCGCACGT 274246 32 100.0 33 ................................ AGCGCGATCGCGCTGACGGTCGCCAGAAACCCG 274311 32 100.0 35 ................................ AGCACAAACGTCATGTCATCATGTGCGTTCAGGAG 274378 32 100.0 35 ................................ TCGTCGAAGCTCGTCATCACGAAGCGGCCTGACGG 274445 32 100.0 35 ................................ ACGCCGCCACCTGCTGCACGGCCAGGTGGCTGCAA 274512 32 100.0 35 ................................ ATTGATGGGTAGTCCACCCATAACCCACGCTTCGG 274579 32 100.0 35 ................................ CGAACTTGAGCGGCCGGTGCGGATCGTCCGCGAGA 274646 32 100.0 38 ................................ AGGCAGGCGGTCCTGAGAAGCGCGAAAACGGCTGTCGT 274716 32 100.0 33 ................................ CCTGATCGTCGCGGATGATGCCGATACCGCGTC 274781 32 100.0 33 ................................ CGCTCGGCGTGGGGTCGCTGCTGTACCGCATCG 274846 32 100.0 33 ................................ CTCACAACGAATGGGCAAAGCGCATGGGACTCG 274911 32 100.0 34 ................................ GCTCATAGGTGCTCCATATAGGTCGCTTTTTGGG 274977 32 100.0 36 ................................ ACCAACGATGACGAAATTATTGGCGTCATCTTTCAG 275045 32 100.0 35 ................................ CCGATGGCGCTTGATCCGGCAGTCGAGGCCGCTCT 275112 32 100.0 35 ................................ CTGCAGGTCACCGATCCGGATATCGCGCAATACTT 275179 32 100.0 34 ................................ GATCTCATCACGGCGAAACCGCGTGACCGCCGCC 275245 32 100.0 36 ................................ GTCACCCTATTACCGTATGGGTTAAGAGTGGCATCG 275313 32 100.0 34 ................................ AACAACATCAACAACTACGGCGGTCAACCGTGGA 275379 32 100.0 34 ................................ TCATCGTGGCTCCGCTCAACGTGGCCGAAAACAC 275445 32 100.0 35 ................................ CCGATCCCAGCTTGAGACGCAGGAACGCCGCCTCG 275512 32 100.0 35 ................................ TTCAACATGGGCGCGGTGCGTCAGCCGATGAAGGA 275579 32 100.0 34 ................................ GCGACATCGGCTTCGCCCTCGACGGCCGGGAACT 275645 32 100.0 35 ................................ ACCGACGTTGCGAGCTGGGAGACCTACGCGACGGA 275712 32 100.0 35 ................................ GTATATTTGCGACCGAGAAGATACTTGCTCACGAA 275779 32 100.0 36 ................................ GTCAAAGCCGGGGCCGTTCGGGTCCTGCGTCGGGTC 275847 32 100.0 36 ................................ CCACTATCGACGGCACCGTCGCGTCAGCAGCAGCAC 275915 32 100.0 34 ................................ ATACATGCTGTCGATCCTGTACATGCAGGTCTCC 275981 32 100.0 35 ................................ ATGCTGTGGGAAAGCACGGGCGCCGGGCTTTATGC 276048 32 100.0 36 ................................ TCGAGTCGATCGGTGGGCGTGTAAAGGTGATCGAAG 276116 32 100.0 35 ................................ TCCAAATTCTGGAAAGGCAACGCGAGTTGCGCAAC 276183 32 100.0 34 ................................ TTGATAAGGCGGGCCCAGGCTGGCCAAAGGTGTC 276249 32 100.0 35 ................................ AACGCCGAAGCGCTGGACCGCATCGACTTCGACGA 276316 32 100.0 34 ................................ ACCAAGCGCGATGCGGATGAATTCGACATCGGCT 276382 32 100.0 34 ................................ CATGAACCCATGAACGTCTTCATAGACGATCGAG 276448 32 100.0 33 ................................ TTGACGTAGGGGACGCCGAGCCTAGCTGCAGCG 276513 32 100.0 34 ................................ CAGGCAGCATTGGCTGGTCCAGCCGCGGCAGGGT 276579 32 100.0 36 ................................ TTCAACTTCAACGCGTCGGTCATGAAGTCTGGGCTC 276647 32 100.0 35 ................................ TTCGCCGAACCACAGGGCGGTGGGGTCGTGCCTGC 276714 32 100.0 34 ................................ CCTTCACCCGCTCCAGCAACTTCAATAACTTAGA 276780 32 100.0 34 ................................ TTCGTCAGTTGAGGGCCGACGATGGCCCATTCTT 276846 32 100.0 36 ................................ GTTTTCGAGCTGCATAACGACGCTGCGCACGAGGAG 276914 32 100.0 33 ................................ TTTTCCACGTAGCCCCAATAAGGCAAGAGGAGC 276979 32 100.0 36 ................................ CGCCTCATCGTCCCCGGTGTGAATGAATTGCATATC 277047 32 100.0 34 ................................ ATCTCCTCGGGCGTCATTTCGTTGAGCGCATCCC 277113 32 100.0 34 ................................ CGTCAACTTCCGCTCGGTCGTCTCAAGTTGAGAC 277179 32 100.0 34 ................................ TTCAGGATAGCCGGAACCTCACCCGGCCGGAGCC 277245 32 100.0 34 ................................ CTCGCCAAGCTCCCGGAAGAAAAGCCCGCCCAGG 277311 32 100.0 34 ................................ TCAAAATGAGTGTGGCCGCTTTAAGCCTGATGAG 277377 32 100.0 34 ................................ GATGATTGGGGCATGATCCGCAATGCAGACGGTA 277443 32 100.0 34 ................................ GATGATTGGGGCATGATCCGCAATGCAGACGGTA 277509 32 100.0 33 ................................ AACATATCCGTCCGGTCTGATAGCTGGGGCTGC 277574 32 100.0 34 ................................ CCCGAGACCGGCGGCGCGGCGAACCATGCGGGTC 277640 32 100.0 34 ................................ TGTTGTACGAAGGCCAGCGGGTCCAGAAGGTCGT 277706 32 100.0 35 ................................ CTGCTTCGTTTCCTTGCCGGTCGCATTCGGCTTCG 277773 32 100.0 35 ................................ AAGGCCATCTCGATATACTTGTAGCCCGTTGCCCA 277840 32 100.0 34 ................................ ATCTTGACGGACCGGATGCGGCAACCGCTCACGC 277906 32 100.0 34 ................................ AGCCGGGGTAGTTCCAAGCGATTGGCAGATTAGG 277972 32 100.0 34 ................................ AGGAAACAAGTCTTGCGACAGGTCAGCATTCCTT 278038 32 100.0 37 ................................ CGGGGTTATTGCGATCGATTGCCAGAATTTCGCCGGG 278107 32 100.0 34 ................................ AACAAGCCGCCTACCGGCCAGCACACAGTGCTAG 278173 32 100.0 35 ................................ ATCTCGCCGCGCACCGAGTTGTCCACGAACAGGAC 278240 32 100.0 35 ................................ GTCGATTCCATCACCGACTCGCTGAAAAAGCTGGT 278307 32 100.0 35 ................................ CTTTCCTAGCTGCCGGTTGATTTCAAAACCGGATG 278374 32 100.0 34 ................................ TTTCGTCCCGCTGCAGGAAGGTCTCATCACTGGT 278440 32 100.0 35 ................................ TTTTCGATGATCCTCATTCTGCCGGTCCCTCCGAT 278507 32 100.0 36 ................................ GTCATAAACGAGCATGTCCCATATCCAAAGCCGGCC 278575 32 100.0 34 ................................ AACCAAAGCTGATCGAGCGGGATGCGCCGCGCCA 278641 32 100.0 34 ................................ GCTGCACCCGCCGCCATCCGTCCGCAGCAGATAG 278707 32 100.0 34 ................................ GCGGTGATGGTTGAGATGGGCTCGCGAAGATCTG 278773 32 100.0 34 ................................ CTCATGGTCGGTAGTGCAGAGCGGCCACGCATTG 278839 32 100.0 33 ................................ GTTTTTGAAGAACGGGGCCGACCGGATGATACG 278904 32 100.0 34 ................................ CAACGGTCATGACCGTAGACACCGGCTGACAGAG 278970 32 100.0 35 ................................ CCACGATCTTGGCAGGCTGGGAGCAGGTGGATTGC 279037 32 100.0 35 ................................ AATATGGCTCGCGCTCAGATTTCAGCACTCGAAGC 279104 32 100.0 40 ................................ GTTTTCGATCCATCCCATGCTGAATGCGCTGAGGGCGTGA 279176 32 100.0 34 ................................ TTCTTCGAGGTGCGGATACGGTTGCCGAGGTCGT 279242 32 100.0 34 ................................ TTAGCGGTAACGGCCTTGACATCGATCCACTGAG 279308 32 100.0 34 ................................ ACCGAAACGCGCGTTGTCGACGACGAACGGAAGG 279374 32 100.0 34 ................................ TTGAACTTGTAGTGCATCCGAGAGAGTACGCCGA 279440 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 116 32 100.0 35 GTCGCCTCCCTCGCGGAGGCGTGGGTCGAAAC # Left flank : ACCAATGCTGGTTCTCGTCACCTACGACGTCAACACGACCGAAGCGAATGGCGCTGCCCGTCTGCGCGCGGTGGCGAAGGCCTGCCGCGACTACGGTCAGCGCGTGCAGTTCTCCGTCTTCGAGATCGAAGTTGATCCGGCTCAATGGACGAAGCTCAAGGCGCGGCTCGAAGGCATCATCAAGCCGGAATTCGACAGCCTCCGTTATTATTATCTCGGCTCCAACTGGCAGCGAAAAGTCGAGCACGTCGGCGCCAAACCAGCCACCGACCTCGGTGGTACGCTGATCGTCTGATACATTGACGCTGCTTGCCGTGAATCGGTGCGAACCATAAGCGTGCCTCAAAAGACCGGCAGGTTCGCACCGGGTTCAGCTTTTTGAAATCGTGCAGAATTTTATCGGATAAAGCCGGCCCATGCGGGTTGAAGCTAAGGAGGCGTCCCACATGCGCGAAATCTCCCAGCTTTCCTGTTTCCTGGCAATCAGTTAGACAAAGGAG # Right flank : GCCCAAGAGCCGCCAGGACGCGCCCACGGCGGCGTCGCCTCCCTCGCGTGCGGATTCCGACGTGAAGCCGGCCGCCATTCCGATCAAAGACCGGCCACCATTCCGATTTGAAGCCGGCCACCGTTCCGATCAAAGACCGGCCAGTTTTCGGCACTGAACATTACCTCCTGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCTCGCGGAGGCGTGGGTCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCCTCGCGGACGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //