Array 1 225907-227195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPO010000006.1 Pseudomonas gingeri strain D5001 run0228_D5001_S48_L005_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 225907 28 100.0 32 ............................ TACAAGTTCGCCGACAAGTCCACCGCGCAGAT 225967 28 100.0 32 ............................ TGTCTGCCGAAAAATGATCTGGCGATCCGAAA 226027 28 100.0 32 ............................ ATTCGCGCAGGAATTCATCATATCCACCCAGG 226087 28 100.0 32 ............................ ATACGTCGCGGAGTTCGTTCGACTGCTGGTGG 226147 28 100.0 32 ............................ AGAGCCTTGTCGAACATCACTTCAGCAATCTT 226207 28 100.0 32 ............................ ATCGACGTTCAGCCAGTCATCCAGCGAGTTGT 226267 28 100.0 32 ............................ AATCAGGTCGGCGCAACTTGTGCTGTGGAAGA 226327 28 100.0 32 ............................ AAGACCATCCCTACGACCATTGAGCGCAAAGG 226387 28 100.0 32 ............................ TACAATGGCGACTTCGAAGGCGCTGACTGGAT 226447 28 100.0 32 ............................ AAGAACCTTATCGATGCTGCACGGAACCACAT 226507 28 100.0 32 ............................ TTTGCGCGTGAGGGGATTGTGCATTCTGTTGC 226567 28 100.0 32 ............................ TAACGCGTCTACCACTTCATCGACGGACTTGG 226627 28 100.0 32 ............................ GATCGGTGGAACGATGAATTTCACCGATGCAG 226687 28 100.0 32 ............................ CAACTGGTGGGCAAAGACCGCCTGGCTGGCAC 226747 28 100.0 32 ............................ TTCAACGTTTGCAAAGTACGAACGCGGAGAAA 226807 28 100.0 32 ............................ ACAGCCATTTGAAGACCTTGTGCCCGTTGTCT 226867 28 100.0 33 ............................ ATGGTGGTCAGGCTGCCACCACAGATCCCCCAT 226928 28 100.0 32 ............................ GCACATGTGCACCTGCTGGGTCTTTGTGAACG 226988 28 96.4 32 ............A............... TTGACCGTCGGAACACCGGCCTCGATGTGAGC 227048 28 96.4 32 ............A............... TGTCGCGCCTGGCGGGCTGGAAAAAGGTTGTG 227108 28 96.4 32 ............A............... TTCAGGCCGTCGAACGACTTGAACAGCTCGGC 227168 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCAGGTCGCCCCTGATTCAAAAAAGGAACAGTACCTTTTCTGAATCACCTTTGGACATGTCCGAAATATGAAAATGTGAGTGACCTCAGAATCGTCACGCGCCTAGGGCTTCCATCAGATCCCGACCGAAGGCCGTGGCGACGTACATGTGATCTGTTCGCGGCCTCTCAACCGGCAGAGGAAACGAAGGTAATGACCGTGCTGGCGATGGGGCAGAGGAACACTGCGGGCCGCCAGCGTCTCGCAAAATCCCGAGTGGGGCATGCGCGCCGGGAGATGATGAGCCGCAGCTTCACCACGCGGCTGGATCAGCTTTGGCGGGTGTCTTGTTGCTGAGCCCAGAGGAGGCGTCACGAAGTGTCATGGCTGACCCTCTTTTTTGGGTGAGATCCCGCCGCTAATAAAATCAATCACTTACGGAACGGCAAAAAAAGAGGGGTAAACTGGCAATTATTGGGGATTTGCCTTTGCAGGCAGAGCCTTATCACCGAAAGTGTCTA # Right flank : ACAGAACTAGAACCACACACCGGCGGCTAGGCCGTTCGCTGCCGTATAGGTGTTTATTGAGCGGGCCTAGTCAGTAGATGGAAGCCCGAAGCACATAGGTAACCTGATGTGGACGCTGTTCGCCCATTACTCCCAGTTGAGCGATGGAAGGCCGAAGTCGTACCAGATGGACCACAGGATAACCAGCAGACCGGCAAGCACCTCGCGGCGGCGATATAACACCAGGTAGCGCAATACCACGCTCAGGTCGGAACGACTCAATGCACGTAGGCTTTGCCCGTGGGACATCAGGCGCAACGCATCCTCAGGTGTGTCGTGGTGGCGGCGGGAGTCATAGCCATATCGACGATAGGCCCCTGATGAGCCGGTGTACCCCAGTAGGATTTCACCCTCTAGATGGATCAGGCGTGGCCTCAGGTTCAGGGACTCCATCAGGTCCGTAGCGCTGCTGACGATGGAGCTCACTCGGTCTTCGCCAAGGATGCCGATCGCATCGCCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 228776-229524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPO010000006.1 Pseudomonas gingeri strain D5001 run0228_D5001_S48_L005_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================== ================== 228776 28 100.0 32 ............................ CCAGAGAAAACCATCTTGATTGCCTCCCCCAG 228836 28 100.0 32 ............................ GTATCACGAACGGTCACCTTCCGGCCCCAGTG 228896 28 100.0 32 ............................ TGATTGAAAAGTTTGTCAGCATGATTGTCTGC 228956 28 100.0 32 ............................ TCGATGGCTCTTCTCATGAATCTGTCAGCCTG 229016 28 100.0 32 ............................ AGGTGCGCGATCAGCCGCGGGAAAGAGCAGGG 229076 28 100.0 32 ............................ CCTCTTTATTGGCATGCGGTTTGCCGTTGAGG 229136 28 100.0 32 ............................ ACTTACGAGCCTGCGTCATTGCCCATCAGCCT 229196 28 100.0 32 ............................ TAACCGGGTGAACCAACGAATGGAGAGAGTCA 229256 28 71.4 94 ....................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTGCAGGCAGCTCAGAAGAGTCATTACCGCCTTGTTCGCATTGATCTGCC 229378 28 100.0 32 ............................ GATTATGAGTCGGACGCTCTAACCATCTGAGC 229438 28 85.7 29 .C.........CAT.............. AAAGGCGGATTGCTGTTCACCGAGGTGGC 229495 28 67.9 0 .CA...C....CAT.A..G..G...... | GT [229499] ========== ====== ====== ====== ============================ ============================================================================================== ================== 12 28 93.8 37 GTTCACTGCCGTGCAGGCAGCTCAGAAA # Left flank : GTCATGACAGGGATGAAAAAACTGCTGGCATTGGGCAGGCCATTGTTTGGGTCATTAGTGTCAGGCATAGGCGTCCCTTCCGTGTGAGAGCCCCCAGGTGCCCATGCCGCGCAGACCTATCCAAGGCTTATACGCTGAGTATTGCTGCAGGATGACGAGGGCGATTGCTATCAGCGTGAAACAGTAGCAGCAATTGGAAAGCCCACAAGCATTGGCTCCATGAGCGCTGACTACCTCGCTCAATGTGCTGCAACATCTGAGCTGACTGTTGAGGCGCATCGATGCCCGTGTTGCGCCGCAGATGTTGTCTCGGCCAATCTCGTGAATGGGCTTGCTCTCAAGGTCGGTTGCCGATAAGCCTGCGAGCAGACCCTCTTTTTTCAAGATGAAATACCACCTTTAGAAATCAAAGACTTACAGGAGAGTGAAAAAATAGGGGTAAAGTTGGTGTTGCAGATCATTTGTCTTTTCGAACAATACGTTATCTTCGGATTGCTCTA # Right flank : ATATAAGGACATATTAGAGAATTCTCTATAGCGAGCGCGCTGTCGCATAGGCAGCATGACGGCGTGGCTTGGCTTAACACCTGCAGACCGGTGGTTCGGCAGTACGAACGGTTGCCGAAAAGCCAAGTCGGGCAGCATGTGGTTGTACCTGTGGCTGTTGGCACATTGCCATCCTTTCAGTTATAACCCTGCTCAACGATTAAACTGATGTAATCGGCTGCTCGCTCATGGAAGAAATCCGCTCCTCCGATCTCAAGACGATCCTGCATTCCAAACGCGCCAATATCTACTACCTGCAGCACTGCCGGGTGTTGGTCAATGGCGGTCGGGTCGAGTATGTGACCGACGCCGGCAAGCAATCGCTCTACTGGAACATCCCCATTGCCAACACCACGACCGTATTGCTGGGGACCGGAACCTCGGTGACCCAGGCGGCGATGCGTGAGCTGGCCCGGGCCGGGGTGTTGGTGGGCTTTTGCGGAGGAGGGGGTACGCCGCTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 238324-239071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPO010000006.1 Pseudomonas gingeri strain D5001 run0228_D5001_S48_L005_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 238324 28 100.0 33 ............................ ACGAACGCATCGGTATCGCCGTACTTCCTCAAC 238385 28 100.0 32 ............................ TGCTGCAGCCTGTTGCGCGCGCAGACGCCAGA 238445 28 100.0 32 ............................ ATGCGGTACACGATATAACGCTGATTGTAGTC 238505 28 100.0 32 ............................ CATCGATCCCGGCGTCACGGCCTTGTGCGCGC 238565 28 100.0 32 ............................ TACCTGCGCACGGATGAGTACATCGACACCTT 238625 28 100.0 32 ............................ TTGCGCCAGTCTCGGGCGCCGCATAGGCATTT 238685 28 100.0 32 ............................ ATGTTAGCGAACAAGGCTGAGTGCGAGGCAGC 238745 28 100.0 32 ............................ ATCAACGTGGCTGTGTTGACGACTGGCGTGAA 238805 28 100.0 32 ............................ AGCCCCCAAGGTCGCTCTGGCCTGGCACAGAG 238865 28 100.0 32 ............................ AGAACCGGCGGGCTGCTCATACTGCCAGCGAC 238925 28 100.0 32 ............................ TGACCGCAGCGGATGAGCGGGCGGATGTGTTG 238985 28 100.0 32 ............................ CTCCCCCTTCAAAGTCAGCCGCTATAGCGGCA 239045 27 92.9 0 ......................-....C | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.5 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCAGTTGCTGGCGCTGAACTGGCTGACCGGTATGCGGGACCATGTGCAACTCAGTGAGGTGACGATTGTGCCGGTGCAGGTACGTTACCGGCAGGTCAGTCGCGTGCAGGTGGACAGCAACCCGGAGCGCTTGCGCCGGCGCCTGATCAAGCGCCATGGCATCAGTGAGCAAGAGGCCCGCGAGCGCATTCCGGACAGCGCCGCCAAGCGCTGCAACTTGCCCTTCGTCAACCTTCGTAGCAACGGTACCGGACAGGCATTTGTGCTGTTCATTCGCCACGGGTCCATTGTGGACACCGCCCAGGCGGGCACCTTCAACGGCTACGGTCTGAGCAGCACCGCCACCATCCCCTGGTTCTGATCTTCTGGACCCTCTTTTTTGAGTGAGGCAGGCACCTTCGTAAAATCAAGGACTTACGAAGGTGCCAAAAAAGAGGGGTAAAGACCCATTTCTCGAGTATTTACCTTTGCAGACAGGGCTTTACCGGGAAAGTCGTCTA # Right flank : CGCACTCATGTAGAGGCGAGCCGGGAAATCTGTCGCAATACTCTGCGCGAGGTGACGTCAGGAGTTGCTCGGCGCAGGTCGATTTCACGGCCACCGTCATGCCCTGATCGTTACTCCCCTTGGTAACGACCTTCTCTGTGGTTTATGGAGAGAATGAGATTGAGTGTGATGGCGCTCAGTACAGACCACATCACCCGGCTGGGTTCGATAAATAAAAGCGCGCAAAGCACGATTGAGCTGTCTGCCAACATCTGGATGTTTCCGGCACGCCAGCCGAATTTGTTTTGCAGATAGAGAACGGCGATGCCAATGCCACCAAGACTGGTGCGGTGGCGAAACAATACCAATGTACCGATTCCCAAAAGAATCCCGCCGTTGATACTGGCGTGCGCCGGGTGTACCCAGCCGATAGTGACCGTCATGGGGATCAGGGTTGTCATGAGTGAAAGCAGGGTGACCGCGCTGAATGTTTTCAGCGTAAACGCAATGCCCATGCGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //