Array 1 2504186-2504700 **** Predicted by CRISPRDetect 2.4 *** >NZ_WING01000001.1 Actinomadura sp. J1-007 scf7180000000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2504186 29 100.0 32 ............................. GGGACGGCGAGGGGACGCCGGCCGCCGCCGTC 2504247 28 93.1 32 ....................-.......G CGGGAACCGCCCCGAAAACCAGCTCGACAAGG 2504307 29 100.0 32 ............................. TGGTAGGGTGCTGGCCATGTTCCCGCCGGATG 2504368 28 93.1 32 ....................-.......G CCTGAGCCGGGATTCCGCTTTTTTCACTCGGC 2504428 29 96.6 32 G............................ GCGTCGGCGCGTGCCGCGCGGGAGTGCGAAAC 2504489 29 93.1 32 G...........................C CAGATGCCCCGCGAGCTGTGGCACGAGGTGAC 2504550 29 93.1 32 G...........................A GGTGACCGCCGCCCGCGCCGGATCCGCGCATT 2504611 29 93.1 32 G...........................C AACGTGATCAAGCCTGTGTGGGCGGGGATCCG 2504672 29 89.7 0 G.........................TT. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 94.6 32 ATCGGCCCCGCGCCCGCGGGGATGGTCCT # Left flank : GGTTCCCCTGCCCCACCCAATGTTCACTCCACGTTCACCCGCCATTCCACACAGGAACCGGCACCTCCGGCTTCCCCCGCCACCATCCGGGACCGTCCGCCCGTACCGAGAACGCCCCGCACTAGACATCCGGGGACGGTGCCGACCCGGGCACGATCGACGTGAGCTATCAGGCCAGACCGCCTACAACCGGCTCGGGCGATCGTCGGATGCGGCGACCAGGATTGCGCACCGGACATGTGACTACGGCCGACCGGGCGTACAGGCTGATCTCGGCCGATCCCTCCTCGAACGCGACCAGCGCACAGCCGACATCTTCGTGCCATCGACGCAACAAGCCGCCCCGCGCAACGCCCAGGAAGTGCCGACAAAACCACCAGCCCTATAGGCTCAGCCACGCCAACAACGCATGCCCGGAACACCGAGCCTCATCAACCATCATCACTAACCAACCGAATGAAAACCCGCACCCACCCTGACAACCCCGCAGGTCAGAAAGT # Right flank : TCCGCATGAGAGAGACCGCAGCATGGCCCCGGCGGCTGTCGAGCGGGCGGACCCGCCAGGTCTCCATCTCCTCCATGACCTTGTCGGTGACCCGTGAGATCACATCGCGGGAGACCTGGAGCTGGTAGGTCTCGGCCAAGTGCGCCCGGCTCTCGCCGATGGTCAGGCCCTTGGCATACAGACACGATCGCCTCGTCGAACCCCTCGATGCGGCGGGCGTACTTGGGCACGCTGCGGAGTGAACTCGCCCGCCCGGTCCCGCGGCACCTCGATGCGCACCGGCCCGACCTTGGTCGACACCGTCTTGGCCGAGATGCCATTGCGGTGGTCGCCGGACGGAGCGGCCGGGCGTTCGTGCCGCTCATGGCCCAGATGCTCGGCCGTCTCGGCCTGCAGCCCCGTCTTGGTGATCCCGGCCGGCAACCCGTCCGACCAGCACACCCCCTCGGCCCTGGCCTCCCCGATTAGCTCGGCCGCGAGCCGGACCTCCGGCCCACCCT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCCCGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2521151-2521607 **** Predicted by CRISPRDetect 2.4 *** >NZ_WING01000001.1 Actinomadura sp. J1-007 scf7180000000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2521151 29 100.0 32 ............................. TGGGCGGCGCGGGCGCGGCGGGCGGTTCCTGG 2521212 29 96.6 32 ............................A GCCGCCGTGCTCGCCGCGCCGCCGCCGGAGAA 2521273 29 96.6 32 ............................T CCATGCGCCCGGCCATGCGGACCCGCGCCGTA 2521334 29 100.0 32 ............................. TGGCCGCCCTGACCTACACGGCCACCGGCGCG 2521395 29 96.6 32 ............................G CGCTCGCGCTGCCCCGGGGAACCCGGCCGCGC 2521456 29 100.0 32 ............................. TTGAGTTTGTGGATGGTGGCCGCCATGTCCGC 2521517 29 96.6 33 ............................G GGGGTTGCGGATACTGAACGCGTTGTCGCGGTT 2521579 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.9 32 GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Left flank : CCCGCCGGTTCCCCCTGCCCCGCCCAACGTTCACTCCGCGTTCACTCATGGTTCCACCTCAGACTCGGGCACCCGGCTTCCCCCACCGACATCCGAACCGTCCGCCCGTACCGAGGCCGCCCCGCACTAGACATCCGGAACCGGAGCCGAGCACGATCGCCGCAACCTACCGGGCCAGGCCACCCACAACCGGCTCACGCGATCATCGAATGCGGCGTCCACGGCTGCGCACCGGACAAGACACTACGGACGGCCGGGCGTACAAGCTGGTCTCGGCCGATCCCTCCTCGGACGCGACCACCGCACAGCCGACGTCTTCATGCCATCGACGCATCAAGCGCCCACGTGCGACACCCAGTAAGTGCCGACAAAACCACCAGCCCTATAGGCTGAGCCACGCCAACGACGCATGCCCCGAACACCGACCCCCATCAACCATGATCACAAGCCAACCGAACAAAAACCCGCACCTTCCCTGACAACGCCGCAGGTCACAAAGC # Right flank : TGTCCAGGATCACCCGGCGCGCTCCTGTCTCCTGTCGGCCCCGCGTCCGGGCGCGGGGCTGACGAAGCGCTGGTGCCGTCCATGTCGCCCTCGGTCGAACCACCCCCGCGGGCGCGGGGCTGACGACACGTGCCCGAAAAGCAGGCACACAAGCCGCGAACCATCCCCGCGTGCGCGGGGCTGACGGCGTGTGGCGGCTGCACCGTGGTCCACCGCGCGAACCATCCCCGCGGGCGCGGGGCTGACGGCCCGGTCTGCCCGTAAGGAACCTCCCTATGAGAACCATCCCCGCGGGCGCGGGGCTGACCACGGCGGCCGCGTCGAGCTGCTCGCCGAGCGCGAACCATCCCCGCGGGCGCGGGGCTGACTTCGCGTAAGTGTCCGTCGCCCAGGTGGCCGCGGAACCATCCCCGCGGGCGCGGGGCTGACCTCTGGGCCGCGATCAGTCCGCAACGTGGCCTGGAACCATCCCCGCGGGCGCGGGGCTGACACAAGGCCCT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2531834-2533142 **** Predicted by CRISPRDetect 2.4 *** >NZ_WING01000001.1 Actinomadura sp. J1-007 scf7180000000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2531834 29 93.1 32 .............C..............T GGACAATTTACATCTTTCCCGGTCATGTCCAA 2531895 29 96.6 32 ............................T AGGCGGTCCGGGGACGGGTGGCCCGGAGAAAG 2531956 29 96.6 32 ............................T GCGTCAATAAGGAGCGTCGCAGGTCAGGCACG 2532017 29 100.0 32 ............................. ACGGCCGTGGTCCAGCGCCCCTAGCACCCGCG 2532078 29 100.0 32 ............................. CGGGCGACGCGCCGGTGATCCTGGTACCGGTG 2532139 29 96.6 32 ............................T TCGACCTTGGCGACGCGACGGCGGAACTCGTG 2532200 29 96.6 32 ............................T GGCGGGCGACATTTTCGGGTCCTCTTTGGTGC 2532261 29 96.6 32 ............................T GCGCCACTGCTTTTTCACTGTGGGAGACACCG 2532322 29 100.0 32 ............................. TGGAACACCGCGAGCAAGAACGCGTGCTGTAC 2532383 29 100.0 32 ............................. CGAGATACCGCAGGACCGCGAGACGTACGCGC 2532444 29 96.6 32 .G........................... AACGAGGGCCCCGGTAGCGGATCGGCTGCCAA 2532505 29 93.1 32 .G..........................G GACGCCGGGGCCGCCCTATGGGAAGCGATGAC 2532566 29 96.6 32 .G........................... GGGTTGGCGATGACGAGCGGCGGCTCCTCGTC 2532627 29 96.6 32 ............................G ATCTCGCCCGCGGGCGAGACGTCGTTGGTCAG 2532688 29 100.0 32 ............................. GATCGGGCGAGCCGGTCCAGGGACGGCACCAC 2532749 29 96.6 32 ............................G TACCGCTACGGGTTGAGCGCGGACGGCGCGGA 2532810 29 100.0 32 ............................. CGGTCCGTCCAGCCCCCGCTGCTGGTCTCCCT 2532871 29 96.6 32 ....A........................ TCAAAGCCCTGGGCAACGGCGTCGTTCCCGCA 2532932 29 100.0 32 ............................. CCCCACACCGTCGACATCTGCCTCACCCGCAT 2532993 29 96.6 32 ............................G CTCGTTCGGGCCAGCCGTAAAATGAACAAGGC 2533054 29 89.7 31 ...A....A...................G CCTTCGAGGGCGAGCTGATCCAGGTCGCGGG 2533114 29 89.7 0 ..................A...G.....G | ========== ====== ====== ====== ============================= ================================ ================== 22 29 96.7 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : TACCGCGTGACCATATGCCGATCCCACGACAGGCCAGCACCCAGCACCCGGGCAGCACCAGCGGCGTCCATGTGCTGGAACGCCGGAGTCGCCTTACCGAAATCATGAACCCCGCACAACCACGCAAACAGCAGCCGTCCCCCACCATCACCGGCGACACCGTCCAGCATCCGCCGAACCGACGGCGCGAGATAGTGATCCCACATCAACTCCGCGACCGCAGCCGTATCCAACAGATGCTGCAACAGCAGATTGGACCGCCCACCAGCCCGACCCGCACTCTTACCCCACAGCACCGCCAGAGGATTCTGAACACCCGGCGCCGACCTCTCGGTACCCACGCAGCGCACCGTAGCCAAGCCCACCGACAAAACCACCAGCCCTATAGGCTGACCCAGGCCAACGACGGAAGCCCCGAACACCGAGCTTCACCAGCCATGATCACAAACCAACCGAATGAAAACCCGCCCCTCTACTGACAACGCCGCAGGTCAGAAAGA # Right flank : GCTCGATGTTTGCTCGGCGCTCCGCTCCGGGACGGACACAACCACCAGAGCCTCGGGGCCTCGCGGGCCCGTTCTCGGGTGCGTGACATTTTGCCGTCAGGTCTGTCTTCATCCGGCGATGATGGGCGGGTCGGGCCTTACTGAGCGCGCCGTGGCCCTATGACGTGGCGAATGCGCGTGCGACCGACCACCATGCCGGGAATTCTGGGGTGCGCATCTGGCGATGCACTGGTTTCGCGGCTAGGCGGCGGCCAGCCGCAACCCGTGCACGTAGTCGCGGGCTACGCGTTCCCGGTCGCTTTACAGCAGGCGAAGACGCGGATTCAGCAGCGTCCAGCGCGCCATGCTGCGTTTCCGGCGCGGCAGTTCGGCCACTTTGCGCTCTCGCTGACGACAGTGAGGTTCCGGTCGCTGACAAAGGCAGAGGCCAGAGCCTGCCGCGGCACCGTCGCACCGTTCGGCTTCGGCCTTCTGAACAGTGCCGGGGTGCTCGCCAGACG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //