Array 1 88278-89831 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMY01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS2 NODE_6_length_213576_cov_18.397772, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88278 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88339 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88400 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 88461 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88522 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88583 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88644 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88705 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88766 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88827 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88888 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88949 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89010 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89071 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89132 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89193 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 89254 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89316 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89377 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89438 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89499 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89560 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89621 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89682 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89743 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89804 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105964-107440 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMY01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS2 NODE_6_length_213576_cov_18.397772, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 105964 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106025 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106087 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106148 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106209 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106270 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106331 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106392 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106453 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106514 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106575 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106636 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106697 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106759 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106862 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106923 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106984 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107045 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107106 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107167 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107228 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107289 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107350 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107411 29 96.6 0 A............................ | A [107437] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //