Array 1 289836-289088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPR010000013.1 Pseudomonas gingeri strain D8001 run0228_D8001_S21_L004_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289835 28 100.0 33 ............................ ACGAACGCATCGGTATCGCCGTACTTCCTCAAC 289774 28 100.0 32 ............................ TGCTGCAGCCTGTTGCGCGCGCAGACGCCAGA 289714 28 100.0 32 ............................ ATGCGGTACACGATATAACGCTGATTGTAGTC 289654 28 100.0 32 ............................ CATCGATCCCGGCGTCACGGCCTTGTGCGCGC 289594 28 100.0 32 ............................ TACCTGCGCACGGATGAGTACATCGACACCTT 289534 28 100.0 32 ............................ TTGCGCCAGTCTCGGGCGCCGCATAGGCATTT 289474 28 100.0 32 ............................ ATGTTAGCGAACAAGGCTGAGTGCGAGGCAGC 289414 28 100.0 32 ............................ ATCAACGTGGCTGTGTTGACGACTGGCGTGAA 289354 28 100.0 32 ............................ AGCCCCCAAGGTCGCTCTGGCCTGGCACAGAG 289294 28 100.0 32 ............................ AGAACCGGCGGGCTGCTCATACTGCCAGCGAC 289234 28 100.0 32 ............................ TGACCGCAGCGGATGAGCGGGCGGATGTGTTG 289174 28 100.0 32 ............................ CTCCCCCTTCAAAGTCAGCCGCTATAGCGGCA 289114 27 92.9 0 ......................-....C | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.5 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCAGTTGCTGGCGCTGAACTGGCTGACCGGTATGCGGGACCATGTGCAACTCAGTGAGGTGACGATTGTGCCGGTGCAGGTACGTTACCGGCAGGTCAGTCGCGTGCAGGTGGACAGCAACCCGGAGCGCTTGCGCCGGCGCCTGATCAAGCGCCATGGCATCAGTGAGCAAGAGGCCCGCGAGCGCATTCCGGACAGCGCCGCCAAGCGCTGCAACTTGCCCTTCGTCAACCTTCGTAGCAACGGTACCGGACAGGCATTTGTGCTGTTCATTCGCCACGGGTCCATTGTGGACACCGCCCAGGCGGGCACCTTCAACGGCTACGGTCTGAGCAGCACCGCCACCATCCCCTGGTTCTGATCTTCTGGACCCTCTTTTTTGAGTGAGGCAGGCACCTTCGTAAAATCAAGGACTTACGAAGGTGCCAAAAAAGAGGGGTAAAGACCCATTTCTCGAGTATTTACCTTTGCAGACAGGGCTTTACCGGGAAAGTCGTCTA # Right flank : GCACTCATGTAGAGGCGAGCCGGGAAATCTGTCGCAATACTCTGCGCGAGGTGACGTCAGGAGTTGCTCGGCGCAGGTCGATTTCACGGCCACCGTCATGCCCTGATCGTTACTCCCCTTGGTAACGACCTTCTCTGTGGTTTATGGAGAGAATGAGATTGAGTGTGATGGCGCTCAGTACAGACCACATCACCCGGCTGGGTTCGATAAATAAAAGCGCGCAAAGCACGATTGAGCTGTCTGCCAACATCTGGATGTTTCCGGCACGCCAGCCGAATTTGTTTTGCAGATAGAGAACGGCGATGCCAATGCCACCAAGACTGGTGCGGTGGCGAAACAATACCAATGTACCGATTCCCAAAAGAATCCCGCCGTTGATACTGGCGTGCGCCGGGTGTACCCAGCCGATAGTGACCGTCATGGGGATCAGGGTTGTCATGAGTGAAAGCAGGGTGACCGCGCTGAATGTTTTCAGCGTAAACGCAATGCCCATGCGCTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 299394-298946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPR010000013.1 Pseudomonas gingeri strain D8001 run0228_D8001_S21_L004_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 299393 28 100.0 32 ............................ CCAGAGAAAACCATCTTGATTGCCTCCCCCAG 299333 28 100.0 32 ............................ GTATCACGAACGGTCACCTTCCGGCCCCAGTG 299273 28 100.0 32 ............................ TGATTGAAAAGTTTGTCAGCATGATTGTCTGC 299213 28 100.0 32 ............................ TCGATGGCTCTTCTCATGAATCTGTCAGCCTG 299153 28 100.0 32 ............................ AGGTGCGCGATCAGCCGCGGGAAAGAGCAGGG 299093 28 100.0 32 ............................ CCTCTTTATTGGCATGCGGTTTGCCGTTGAGG 299033 28 100.0 32 ............................ ACTTACGAGCCTGCGTCATTGCCCATCAGCCT 298973 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTCAGAAA # Left flank : GTCATGACAGGGATGAAAAAACTGCTGGCATTGGGCAGGCCATTGTTTGGGTCATTAGTGTCAGGCATAGGCGTCCCTTCCGTGTGAGAGCCCCCAGGTGCCCATGCCGCGCAGACCTATCCAAGGCTTATACGCTGAGTATTGCTGCAGGATGACGAGGGCGATTGCTATCAGCGTGAAACAGTAGCAGCAATTGGAAAGCCCACAAGCATTGGCTCCATGAGCGCTGACTACCTCGCTCAATGTGCTGCAACATCTGAGCTGACTGTTGAGGCGCATCGATGCCCGTGTTGCGCCGCAGATGTTGTCTCGGCCAATCTCGTGAATGGGCTTGCTCTCAAGGTCGGTTGCCGATAAGCCTGCGAGCAGACCCTCTTTTTTCAAGATGAAATACCACCTTTAGAAATCAAAGACTTACAGGAGAGTGAAAAAATAGGGGTAAAGTTGGTGTTGCAGATCATTTGTCTTTTCGAACAATACGTTATCTTCGGATTGCTCTA # Right flank : TAACCGGGTGAACCAACGAATGGAGAGAGTCAGTTCACTGCCGTGCAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTGCAGGCAGCTCAGAAGAGTCATTACCGCCTTGTTCGCATTGATCTGCCGTTCACTGCCGTGCAGGCAGCTCAGAAAGATTATGAGTCGGACGCTCTAACCATCTGAGCGCTCACTGCCGCATAGGCAGCTCAGAAAAAAGGCGGATTGCTGTTCACCGAGGTGGCGCACGTACCGCCGCATAAGCGGCGCAGAAATATAAGGACATATTAGAGAATTCTCTATAGCGAGCGCGCTGTCGCATAGGCAGCATGACGGCGTGGCTTGGCTTAACACCTGCAGACCGGTGGTTCGGCAGTACGAACGGTTGCCGAAAAGCCAAGTCGGGCAGCATGTGGTTGTACCTGTGGCTGTTGGCACATTGCCATCCTTTCAGTTATAACCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 302263-300974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPR010000013.1 Pseudomonas gingeri strain D8001 run0228_D8001_S21_L004_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 302262 28 100.0 32 ............................ TACAAGTTCGCCGACAAGTCCACCGCGCAGAT 302202 28 100.0 32 ............................ TGTCTGCCGAAAAATGATCTGGCGATCCGAAA 302142 28 100.0 32 ............................ ATTCGCGCAGGAATTCATCATATCCACCCAGG 302082 28 100.0 32 ............................ ATACGTCGCGGAGTTCGTTCGACTGCTGGTGG 302022 28 100.0 32 ............................ AGAGCCTTGTCGAACATCACTTCAGCAATCTT 301962 28 100.0 32 ............................ ATCGACGTTCAGCCAGTCATCCAGCGAGTTGT 301902 28 100.0 32 ............................ AATCAGGTCGGCGCAACTTGTGCTGTGGAAGA 301842 28 100.0 32 ............................ AAGACCATCCCTACGACCATTGAGCGCAAAGG 301782 28 100.0 32 ............................ TACAATGGCGACTTCGAAGGCGCTGACTGGAT 301722 28 100.0 32 ............................ AAGAACCTTATCGATGCTGCACGGAACCACAT 301662 28 100.0 32 ............................ TTTGCGCGTGAGGGGATTGTGCATTCTGTTGC 301602 28 100.0 32 ............................ TAACGCGTCTACCACTTCATCGACGGACTTGG 301542 28 100.0 32 ............................ GATCGGTGGAACGATGAATTTCACCGATGCAG 301482 28 100.0 32 ............................ CAACTGGTGGGCAAAGACCGCCTGGCTGGCAC 301422 28 100.0 32 ............................ TTCAACGTTTGCAAAGTACGAACGCGGAGAAA 301362 28 100.0 32 ............................ ACAGCCATTTGAAGACCTTGTGCCCGTTGTCT 301302 28 100.0 33 ............................ ATGGTGGTCAGGCTGCCACCACAGATCCCCCAT 301241 28 100.0 32 ............................ GCACATGTGCACCTGCTGGGTCTTTGTGAACG 301181 28 96.4 32 ............A............... TTGACCGTCGGAACACCGGCCTCGATGTGAGC 301121 28 96.4 32 ............A............... TGTCGCGCCTGGCGGGCTGGAAAAAGGTTGTG 301061 28 96.4 32 ............A............... TTCAGGCCGTCGAACGACTTGAACAGCTCGGC 301001 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCAGGTCGCCCCTGATTCAAAAAAGGAACAGTACCTTTTCTGAATCACCTTTGGACATGTCCGAAATATGAAAATGTGAGTGACCTCAGAATCGTCACGCGCCTAGGGCTTCCATCAGATCCCGACCGAAGGCCGTGGCGACGTACATGTGATCTGTTCGCGGCCTCTCAACCGGCAGAGGAAACGAAGGTAATGACCGTGCTGGCGATGGGGCAGAGGAACACTGCGGGCCGCCAGCGTCTCGCAAAATCCCGAGTGGGGCATGCGCGCCGGGAGATGATGAGCCGCAGCTTCACCACGCGGCTGGATCAGCTTTGGCGGGTGTCTTGTTGCTGAGCCCAGAGGAGGCGTCACGAAGTGTCATGGCTGACCCTCTTTTTTGGGTGAGATCCCGCCGCTAATAAAATCAATCACTTACGGAACGGCAAAAAAAGAGGGGTAAACTGGCAATTATTGGGGATTTGCCTTTGCAGGCAGAGCCTTATCACCGAAAGTGTCTA # Right flank : CAGAACTAGAACCACACACCGGCGGCTAGGCCGTTCGCTGCCGTATAGGTGTTTATTGAGCGGGCCTAGTCAGTAGATGGAAGCCCGAAGCACATAGGTAACCTGATGTGGACGCTGTTCGCCCATTACTCCCAGTTGAGCGATGGAAGGCCGAAGTCGTACCAGATGGACCACAGGATAACCAGCAGACCGGCAAGCACCTCGCGGCGGCGATATAACACCAGGTAGCGCAATACCACGCTCAGGTCGGAACGACTCAATGCACGTAGGCTTTGCCCGTGGGACATCAGGCGCAACGCATCCTCAGGTGTGTCGTGGTGGCGGCGGGAGTCATAGCCATATCGACGATAGGCCCCTGATGAGCCGGTGTACCCCAGTAGGATTTCACCCTCTAGATGGATCAGGCGTGGCCTCAGGTTCAGGGACTCCATCAGGTCCGTAGCGCTGCTGACGATGGAGCTCACTCGGTCTTCGCCAAGGATGCCGATCGCATCGCCAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //