Array 1 6063-6278 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000032.1 Streptomyces sp. EAG2 Scaffold_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================== ================== 6063 27 100.0 36 ........................... CTTTTGGCTGGGGCTCGGCTGCCCGCACAGGTTCAC 6126 27 100.0 36 ........................... GGATGGCCAGGGTCCGGCTCTCGCCTGCCGGTACAC 6189 27 100.0 36 ........................... TGGTGGGCTGGGGCACGGCTTCCCGCGCCGCTTAAA 6252 27 96.3 0 .............T............. | ========== ====== ====== ====== =========================== ==================================== ================== 4 27 99.1 36 GATGGCCTCAAACGCCGGCCGGGCTGT # Left flank : GGCGGGGGTTGCGGGCGAGGCAGGCGTCGGGGCCGATGCCGAGGCGTTCGGCGACGCCGGGGCGGTACCCCTCGATGAGGATGTCGGCGCGCTCCACCAGGTCCAGGACCCGGGCGGCGCCGTCCTCGGCCTTGAGGTCGACCAGGACGGAGCGCTTGTTGCGGTTGGTGAGGTCCAGGGCGGGGTCGATGCCGAGGCCGGCGCCGCCGGGGCGGTCGACGCGGACCACGTCGGCGCCGAGGTCGGCGAGGAGCATCGCGGCGAACGGGCCCGGGCCGATGCCCGCCAGTTCCACCACCCGGACGCCGTGCAGGGGGCCCGTCGTGGCCGTGTCCGTCATGTCTTCCTCGCTCCGTCGCGCGCCGACCTTGTGACACAACTGATGTAACAGTGTCGATGTTATGGACGGGGGGCCCGGGCCACAAGCCCCTGGAAAGCAAGCGCTCAGCTCAATTCCGGAGCTGCCCGGATGGCCTCAGCTCAATTCCGGGAGCTGCCCG # Right flank : TTGGTGGTCCTACGCTGGATCGGTGACTGATGATTCGGTGGCCCCTCCCGTGCTGGTCAGTGCCTGTCTGCGGGGTGTTCCCTGTCGGTTCGACGGGCGGGACAAGGCGGTGCGGGGGGTTGACGAGGAGTTGGCGGGGCGGGAGGTGGTGGCGTTCTGTCCGGAGCAGGCGGGTGGGCTCGCTACGCCTCGGGCTGCTGCCGAGTTGGTGGGTGGGGACGGGTACGACGTGCTGGACGGACGGGCCCGGGTGGTGGATGTGAACGGGGTGGATGTGACCGAGGCGTTCGTGGCGGGGGCGCACCGGGCGCTCAAGGCCGCGCGGCGGGCCGGGTGCGCGGAGGCGGTGCTGATGCCGCGGAGTCCCTCGTGCGGGCGGGGTGAGGTGTACGACGGGGAGTTCCGGGGGGTGCTGGTGCCCGGGGACGGGGTGACGGCGGCGCTGCTGGAGCGGAACGGGATCGCGGTGCGGCGGGCGCCCGGGGTCTGAGGCGGCCTCG # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGGCCTCAAACGCCGGCCGGGCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 69898-70218 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000035.1 Streptomyces sp. EAG2 Scaffold_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 69898 32 81.2 38 G.T......T.CC...A............... TACTCGCTCCGCCACCCGGAGCGCGGCGGAGGGTGCTC A,CTT [69904,69909] 69972 32 100.0 37 ................................ GCTTTCTTTTGGCTTTCCGGAGCGCAGCGTAGGAAAG GG,GG [69983,69989] 70045 32 100.0 37 ................................ TGTTCTCTTAGCACCCGGAGCGTAGCGGAGGGGGCTC 70114 32 96.9 37 ..............G................. GCTTTCTTTTGGCTTTCTGGAGCGCAGCGTAGGAAAG GGAG [70128] 70187 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 95.6 38 CCCCGCGGAGCGGGAAGGGAGCGCAGCGACCG # Left flank : CAAGCGCCCCCGGCAGGAGCTCCGCAACCGCATGGAGCGCGAGGTCAAGAAGCGGTGGCAGCCCCAAGTACGGGCGCGAGCACGGAAGAAGGCATCCTCCACCGACGGCCTGGTCGTCTCCACCCGCGCCAGATTCGGATTCACCGCGGCCCCCGGCACCACCGACGACGCCCGCGTCCGCGACATCACCCAGGCCCTGCCCCCCGAGTACGCCGACCAGCTCTTCACCGCCCGTGAACAAGGGGCCCCCGAGCAACGCCTCCAGCAGATCACCGCCGACGCCCTCGCCCACATGTACTTCCGCGCCGACGACAGCCGCGCACAGGGCCTCGGAGTGGAGTTCACCGGCGTCGAACAGATCCAGATCGAGCTGTAGCAATCCACTCCCTGCCTTGCCAACTTCTTGACGCCTGTTCATTCCCTCAGGGCCGGCCCAATGGCTCGAAATTTACCCAGCCGTGGCATGGCACTGACACCTTGTAGCTGGCTAGTTCACGGTC # Right flank : TGTTCTCTTAGCACCCGGAGCGTAGC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCGGAGCGGGAAGGGAGCGCAGCGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 67995-67784 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000038.1 Streptomyces sp. EAG2 Scaffold_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67994 29 100.0 32 ............................. CCGACGGCGAGGGCGATGACGGCCTGGACGAA 67933 29 100.0 32 ............................. CACATGGTGCCCCTCGCCGAAGCCTGGGACAG 67872 29 96.6 32 ...........C................. CTCGCCAACGCCAGCGTCTGCCCGAACCCCCG 67811 28 89.7 0 .............A.......T...-... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGGTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : GGTTTGGCGGGCGCGGATCTGGTGGGTGGGGTGGGGGAGGCTGGCGGGGTTGGTCATGGGGAAGAGGGTGCGGGGGGTTGGGGTGAGGTGGCTAGTGGATTTTGGCGTGGTGGGGCGAGGTGGGCGGAAAGGGGGCGGGGGTCTGGCAATGGGCTTCAATGAGCTCGGCGTGCCGTAGGGAGGGGGATTGGGCGTCTTGGGGCAGTTCATGCATTTTGCCGGAATCTTCGAAGCTTGCTGAAAGGGGGCTTCGGGTGGGGTGAAGCCGCAGGCCAGGGAG # Right flank : TGGCCGAACCAGCGCCATGACGCTGCGCGCCCAGTTTCACGCACCCCTCTCCCCCCACCAACCCCCCAACTCCCCCAACCCCCCTGCCACTCCACCCCCCGAACACCCATACTGACCCCCAACCCATCCCCACCCGTCCCAACCCGTCCCAACCCCCAGGGGGACCCCGCCCATGCCCCGCCCCTCCCTCCAAGACCTCATCCGTCGCCGTAGGCAAGGTGCCTTCGTCGGGCGGGAGCGGGAGCTCGATCTCTTCGCCCGGAACCTGGACGGCGCGCCCTCCGACCCCACGCACCGGTTCCTCTTCCATGTGCACGGGGTCGGTGGGGTCGGGAAGTCGACGCTGGTGCGGCAGTGGGAGCGGCTTGCGGTGGGGCGGGGGGCGCTCACGGCGTACGTGGACGACTCGGTGCACAGCGTGCCCGAGGTGATGGCGGTGGTCGCGGAGCAGTTCGCGCGGCAGGGGCGGCCGTTGAAGGCGCTGGAGAAGCGGCTGGAGG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42903-42752 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000045.1 Streptomyces sp. EAG2 Scaffold_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42902 29 100.0 32 ............................. GACGGGTGTCGAATTCTGGCAGTGGGTAACCC 42841 29 100.0 32 ............................. TCGTCCTGCCCATGGACGAGATGTGGCGGGCA 42780 29 96.6 0 ..C.......................... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : TGTTCCACACCCCGGCACCCACCCCCGCGTCCTCCCCGTCCACCACAGAACCCCTCCCCGTAGACCGGTTTGCCGCTGCGGGTCACCTTAGGGGACGGGGGGTTGGGCGTCTTGGGGTTGAGGGGGCGGGGTGCGTGGGGGTCCCTTATGGGGGTGGGGCTTCGGGGAGTGTGGACAAGGGGCGTTCGGGTGGGGCGCCGAGTGATTCGGGGGAGGAGGGGCGTGGCGGGGGTGGAGTTGACGCGAGGTGTTGCCCTGTTCCGATCCGCAGGAGCCACTGGGCGAGCGGGGCCGGCAGTTGGGGGCTTGGTTTCACTTGGGTGCGAGGTTGGTGGGGGCTGGGCTTGAGAAGGCGGGGTCAGGTCGGAGGGACTGGGGGAGGATGGGTGGGGCTGATGGATCGGGAGGGGGTTGGTATGCGGCTTACGCCTGAAAGGTCGCAATCGGTGAAGCTTGCACGGGTGGGTGGTGGCGCCGGGTAAAGGTGCAGGTCATGGAGA # Right flank : GAGAAGCGCGCCCTCCACTCTGGATCGTCGGCGTGCTCCCCGTGCTCGCAGTGCCCCCCCCCGCCAAGTCTCACTCCAGACAAGCCACCCCGGCCTCACCCAACCGTGGGCAGGCCAGCACACGCCCCAGCCTCCTCACGGCTCACAAACCCCACCCTCCACAGCCGCCCCCTCCGCCCCCTCGAAAAACCCCACAACCCGCCCCGCACACCCCCCACCAGCCATCCCCCCGTGTTCCCCGTCCCCCACCACCAACAACGTCCCCCCAGTCCGCGCCCGCATCGCCCGAGCCCAAGGCAACGGCGTGATCACCTCGTCCCTGTGGGCGACCAGCAGCAAGGGCCCGCCCGCCCGGCCCGGTTCCACAGGCGGCCGCTCCGGAGTGGGCAAGCCCGCGCACGTGCTGGTCCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGTGCGGCGTTCGCCGTAGGCCGACCACTGTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9352-9140 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000069.1 Streptomyces sp. EAG2 Scaffold_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9351 29 100.0 32 ............................. TACTCGTACGACGAGGCCGCCCAGAAACTCCG 9290 29 100.0 32 ............................. GCGGTCCTGGTCCGGGCGGTCGACATGCTCGA 9229 29 100.0 32 ............................. GGCGCCCCCCTGTACCACCGACCGTCGGCGCT 9168 29 89.7 0 ............CG.........A..... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Left flank : GGGTGCCCTTGTCGACCAGGTCTTGGAGGGCGGAGAGGGTTGCTGGGTGGTTGGGGGGATCTGGGCTGGGCTGTGGGGGAGGCGGGTTCGGCTGAGGAGGCGGCTGGGCTGGTGGTCGGGCGGTTGGCTGGGGCGACGGAGCCGGGGGTCAGGGTTGCCGCGTCGGTGGCCAGGGCTATGGACAGGGTTAAGGCGAGGGTGCGGGTGGGGTGTTGGGGCATGAGGGCGTCTCCTGGTCGGGGAGGGGCGGGCTGCCTCTCGGGGACCAGAAGGCTTGGGGGTGGGCGGGGGGTTGACTGGGATTGTTATGGCGGGTGAGGGGGCTGGGGTGGCTTTTCAGGTCTCTCGCTGGGTTGCGGTGGGGGTTTTGGGGGAGGATGGGCGGGGCTCTTGATGGGGTCGAGAGGGAGAGCGATATGCCCCGTTCAGGGCAATTGCCGGAAGCTGGCAAGCTTGCAGAGATGGGCTGTGGGGGCGGCTAACGCCGCAGGTCATGGAGG # Right flank : AAGCGGTCGGCCGCGTGCCCCGTCTCGGAGTGCTCCCCGCCGAGGCGGCCCCCCACCCCCTTCGAGTGATCCCCCACCCCCCAAGTGCATCCCCCCACCCCCCGGGCAGCCTCCCTCAGGGAGTTCGTCCACCCGAGAGGAAGCACCGCGTGGGACTGTCACGGAAGTACGGAACCGCTATCACCGAAGGGCCGACCCCGGCCGATGTCGCCGGGCAGGCTGCCCTGCCCTACCCCGACGGGTGGGCGGCAGTTGCCTTCTCCGAGGAGTTGACGAGAGGGAAGGTGCTCACCCGGCCGCTCGCCGGGGAGGACGTCGTGCTGTACCGGCTCGGGACCGGTGCTCTGCGGGCCGTGAAGCCCTACTGTCCCCACCTCGGCGCGCACCTCGGGCTCGCCAAGGTCGAGGGGGAGGAGCTGGTCTGTCCCTTTCACCTCTTCGCGTTCGGGCCCGACGGGGCCTGTGTGCGGACCGGGTACGAGACAGCGCCACCCCGGTCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63-264 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000007.1 Streptomyces sp. EAG2 Scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================================== ================== 63 41 92.7 46 ...............C...........C........T.... GCACGACCGGAAGGCCGGGGAATCCGAGCGCAGCCCCATCGAATCC 150 41 100.0 33 ......................................... CAGCAACCGGCATCCCCAGTCGCGGCGCAGCCA 224 41 97.6 0 ..C...................................... | ========== ====== ====== ====== ========================================= ============================================== ================== 3 41 96.8 40 CAGCCCGGCCGGCGATTGAGGCCAGTCGGTGACCGGCACGG # Left flank : TCCGTGACCGGTACGGGCACGACCGGAAGGCCGGGGAATCCGAGCGCAGCCCCATCGAATCCC # Right flank : GGCAGCGGACCGGCACCCCCAGATGCGGCGCGGCCCATGTGCGGCGCGGCCTCAGGCCGTGGCCGACTTCAGGGGGACGGTGGGGTCGGCGACGAGGGAGGGGGTCAAGGGGGCGCCGGAGGCGATGAGTTTGCGGCCCTGGGTGAGGTCGCGGGGGCGGCCGACGGTGAGGACGGCGCGCAGGGCCCCCGCCGGGGAGAGCCAGCAGAGGGACCAGGCGGCCGAGTGGGGGTCGCCCCGGTGGACGAGGAGGTCCTCGGGCGCGTGGTGGCCGGCGTACTGGACGAAGCGGCCGAACTGCTCGGACCAGAAGTAGGGGACGGGGTCGTAGGGGTCGGGCTCCTGCCCGGTGAGGGCGGCGGCCACGGTGCGAGGGCCCTGGAGGGCGTTGTCCCAGTGGTGGACGAGGAGGCGGCGCCCGTACCGCGCCGAGGGGAAGGAGGCACAGTCCCCGACCGCGTACACATCGGGGACCGAGGCCCGCAACACGCCGTCCGCCA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGATTGAGGCCAGTCGGTGACCGGCACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.20,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 6284-5950 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000127.1 Streptomyces sp. EAG2 Scaffold_127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6283 29 100.0 32 ............................. GCCTCAAGATCGTGGGGCTGAAGGTGACGGAG 6222 29 100.0 32 ............................. TGCAAGACGCTCACGAGCACGTTGACCACCAT 6161 29 100.0 32 ............................. TACGACCTCCAGACGCGGGAGATCGGGTCCGA 6100 29 100.0 32 ............................. CAGCACGAGGAGGTGGACATCTACTTCCTGGC 6039 29 96.6 32 ..................A.......... GTCCGGCCGCCGTCGCCGATGACCTCTTCGCC 5978 29 93.1 0 ..............A......A....... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : CTGCTGGGCGGCGGGGGGGCGGGGGGGGGCGGCGGGGGGGCGCGGGGCGGGGGGGGGGGGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCTGTGTTGGGGGCGGTGTTGCTGGGGATGGATGCGGTGGGGGCGGGGGTGGGGGCTTATGGGCGGGTTCGGGGGTGGTTTGGGTGAAGGGGTCTGGGGGGGGCGTTAGGTGGGCTTCAATGGGGGGTTGGCGTTTGCGAAGTCGGGGGATCTTATGGGCTGTTCGCGCGGAATGCCGGAGTTTCTGAAGTTGGCGTGGGGCGGGGGTTGGGTGGGGTAAACCGGCAGGTCGGAGAG # Right flank : GGATCAGCCCGGGCCGCCCGCGCACCACCCGGGCCGCCCCCGCACAACCGGCCACTCCCTCCTGCCAAGCCAGACCGACCCACTACGCCGGACCTCCATCCACCCGCCCCGAGCAACGTCACCCCTTCCCCGTCAACTCCCCCGGCGCCGGGAACCGAACCCACCCCCAACACGTGTCCCTGGTCAAGCCGCCGCGCGCCCTAGCCAAGCTGAGGCGCCCCAGCCCCCGGATCAGGTGAACGCCCGTGTGGTTCGTGGGGAGTGCGGCCATACTGGCGGCCGGGCACTAGCTTTCCCGGGAGTGGGGAAGGGTGTTCTGCGACAGGACCGAGGGGGAGGTCGCGTGAGCAGTCAGCCGACGGGCGGGGCGCCGCCGGGGTCCGGCGTGGGTGCGGTGTCGGTGCCGGGGCCGCGTTCGCCTGCGCCCCTCCCCGAGCCGCCTGGTCCGGCCGGTGTGCCCGGGCCTGTTCCCGACCCGCCCCAAGACCCCGGCCTCCCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81463-81312 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000012.1 Streptomyces sp. EAG2 Scaffold_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 81462 24 100.0 39 ........................ TCCCTGACCGGCAGATCACATCGGACCGGCGCACAGACC 81399 24 100.0 40 ........................ TCCCTGACCGCGAGGTCGGCACCGACCAGCACCCCTTGAT 81335 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CGCGGTGGCGACGGTACTGGCGCTGCTCGTCAGCCTGGTGACGACCTTCGCCACCTTCTTCCTCGGCCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTCCTCCGGGCCGTGATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCCAAGATCATGCAGGTGGTCGCTCCGCTGGACGACGACACCCCCTACGGCCCGTGGGGCGGCCTCGGCATCATGGTCCTCTGGGTGATCGCCGCACTGGCCATCGGCTACGCCTTGCTCCGGCACCGGGACGCGTAGCCAGGCGGGACCTGGCCGTCGGCCGGGCAGCCTCGAACGTCGGCCCGGCCACCAA # Right flank : CATCCCCAGCCCACCCCGGGAGGGAACTTGCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCATCGGCCTGACGAAGCGCTACGGCGCCAAAACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACCGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCGCGTCACGATCGGCGGCCTCCCCTACCGCCAGGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGAGGTGGCGCGCCACCGCTCGAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2547-2155 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000141.1 Streptomyces sp. EAG2 Scaffold_141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2546 28 100.0 33 ............................ CGCCGTTTTGCCGACCGGGGGGCCGCCCACGGC 2485 28 100.0 33 ............................ GGTGGCCGAGATGATGCCGAGCGCGTCGTTGAT 2424 28 100.0 33 ............................ GGTGTGCGCCGATCTCCCGTACGAGGCTGTACG 2363 28 100.0 33 ............................ GCCGGTACCCGAGACGAAGACGAAGCGGCGGGG 2302 28 100.0 33 ............................ CTCGTGGCCGCGCACGGCAGCTGGTCCACTCCC 2241 28 96.4 31 ......................C..... GACACTGACCGGTGCTCTGTGTCTGGCTGAG 2182 28 75.0 0 .............G.AC..A...GG.C. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 95.9 33 GGACAGCCCACGCACGTGGGGGTACGAC # Left flank : CCACCTGCCTCATCACCCACCGCCACGTCCAACGCCTTTGTTAGGACCTCTAACTCGAACCGGCACCAGACGAAGCGAGTCGCCGTATCACGCTGCCATTCTTCTCCCTCGCGCCGACCGGCGTCTGCATGTCGGCGCGGGCAACTCCCAGGCGTGGACCATTACCTGAGGCACCCTGACGGAAGGCGCAGGGCCCAGAACTCAGGGAGGCCGGAGGCACCGGGCATCCCTCATCGACGGAAACGGCAACGCCGGCAGAGGCGTCTGCGTCGTTGCCCACGCCCCGCCAGATGGGCCCGTCCGCCGTACTTGTGTCCTTCGGCGGAGCGCTGGACATCGATGAAGTTTCCCCGGCCGCACGTGTGCGACGAGTCGAACCAGACGGCCACAGCATCGACGAAAAAGTCTATGCTCCCAGAACCGAGCGACCACAAGCCGTCGATGCGGACACAACGCGGACACTGAACGTCCTCGCGTTGCAAAGCACCAGCTCGCGAAGG # Right flank : AGCAGGCGAGGCCTAACAACTCCCCGCTCGTAAGGGCAAGGCCGGTCCACTCCTCGCCGCGGAACTAGAAGCTCAAGGCAGTCCTCATACGCAAAAACACGCTATTGGAAGTTGCATCTCGATTTCGCGGGAGATTCGCATCCCCTTTTCGCAGCCATACCACCCGAACCCAGTAGGACAGCAGGCCATCGCGCTATTGGCGCGAAATCTCGATGCAACTAATCACGAAACTCTGATGCAACTTTCCAGTTCCGACTTGACACCCCTACCGTCTCACCCAGCACTGACAATCGGCCTTGAGAGTGGAGAGGCAAGGTTGAGGAGGGAGAACAACCAGAAGTCCGTGGAAGCGCACGTGAAGCGTGCGGCCGGCCGAGGTGACCGCCTCCGCCCGGCAGAGGCGAGCGGACAGCCGCCCGCGGTCAGGACCAGGTGATCACAGGCGCCTGCCCGCTCGCTGCCCCGGGGCCTGTCAGGCCACGGTGGCTATGGAGCGGCCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACAGCCCACGCACGTGGGGGTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 7521-7854 **** Predicted by CRISPRDetect 2.4 *** >NZ_PITL01000019.1 Streptomyces sp. EAG2 Scaffold_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 7521 27 100.0 34 ........................... CTCGGAGTCCTCTCCGGCGCAGCCGCCTCTCTCT 7582 27 100.0 34 ........................... CCTGTCACCAGGGGCGGCCGGGTGACAGTCCCGG 7643 27 100.0 34 ........................... CCGAGGGGGATGTCGCCGCGCTCGCGCGTGCCCG 7704 27 96.3 34 .............T............. CCGTGATGCCGGTCGTCTGGCCTGCCTCGGCGTC 7765 27 100.0 34 ........................... CCGTGACCGGCCTCGGCGTGCAGATCGCCGTCGG 7826 27 100.0 0 ........................... | GA [7851] ========== ====== ====== ====== =========================== ================================== ================== 6 27 99.4 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : TGGACGACGGGCTGGCGATGAGCTTGCTCCGGGCGATGGACATGCCCCTGTCCCCGCGCGAGGTGCGGGTACTGAGCAGGGCCGCACAGGGGGATTCGGTGGCGGAGATCGCGCGGGGGTTGTGCCTGTCGCACGGGACGGTGCGGAATTACATCGCTTCGGCTACGCGGAAGGTGGGGGCCAGGAATCGGGTGGACGCGATTCGGATCAGTCGGGCTGCGGGGTGGGTTTGAGGGAGAGGTGGGGCTGGTGGCGCTGGTTGGGGGACGGGGGTGGGGTTGGGGCATGGCGGGTGAGGTTGGGTCGGGTGAAGCTGAGGAGTGGGTCGGGGTGTGAGTGGCTGGGAGGGAGGGGTTCGCGGGGGCCTGTCGGGTTCAATGGGGGGGCGGGTGCTGGGCAGACACCGAGGAGGGGATATGAGGCATTCGCCCGCATTGCCGGGATCCTTGAAGCTTGCAGGAGAGAGCGACTGGGCTGGGTGAAACCCCAGGTCAGCGAGA # Right flank : CGCGCCAATCGTCAGCGCTCCTGAGCGTGCCCACCCCCCGCCCACGACGAGGTCGACGCGGTGCTCCGGCTTCCCACCGCCGAAGGCTGCCCCAGCCCCGCCGCCAGTTCCCGATACAAGGCTGACTCCCGAAGCAGCGCGGCGTGGGTTCCCAGGTAAGGGGTCGCCCCGTCCAGAAGCAGGACGCGCTGCCCAGGTTCAGGCGCCGGAAAGTGATGGCTCACCGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCAAGCTCTGTCGCAGCCCGCGCCCCCGCGTCCAGATGGGCCGTGGGCTCGTCCAAGAGCAGCAAAGGCGTAGGCGTGAGCCAGGCCCGTGCCAAAGCGATGCGGCGGCGTTCGGAAGGGGTGAGGTGGTCCGGGCGAAGAGGGCGGGCCGAGTCAGACGCGAGAGAGGCCAGGGCGAAGGTGTCGATGGCTTCCGTGATGCGGGGGGCCGGGGCGTTCGGGGTTAGGTAGGTGAGGTTGTCCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //