Array 1 118923-118101 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHVW01000004.1 Escherichia coli strain BSI113 NODE_4_length_283583_cov_99.287663, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118922 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 118861 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 118800 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 118739 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 118678 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 118617 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 118556 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 118495 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 118434 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 118373 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 118312 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 118251 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 118189 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 118128 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145782-144469 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHVW01000004.1 Escherichia coli strain BSI113 NODE_4_length_283583_cov_99.287663, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145781 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 145720 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 145659 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 145598 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 145537 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 145476 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 145415 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 145354 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 145293 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 145232 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 145171 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 145109 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 145048 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 144986 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 144925 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 144864 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 144803 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 144742 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 144681 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 144620 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 144559 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 144497 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //