Array 1 146051-146871 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXC01000005.1 Salmonella enterica strain BCW_6242 NODE_5_length_269911_cov_3.49086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146051 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 146112 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 146173 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 146234 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 146295 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 146356 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 146417 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 146478 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 146539 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 146600 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 146661 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 146722 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 146783 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 146844 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163512-165189 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXC01000005.1 Salmonella enterica strain BCW_6242 NODE_5_length_269911_cov_3.49086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163512 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 163573 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 163635 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 163696 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 163757 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 163818 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 163879 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 163940 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 164001 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 164062 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 164123 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 164184 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 164245 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 164306 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 164367 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 164428 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 164489 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 164550 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 164611 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 164672 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 164733 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 164794 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 164855 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 164916 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 164977 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 165038 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 165099 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 165160 29 93.1 0 A...........T................ | A [165186] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //