Array 1 3625168-3623487 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035319.1 Rhodococcus sp. ABRD24 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 3625167 28 100.0 35 ............................ TCGTCGTCGCAAGTTGAAGAACGGATCCCGGCAGT 3625104 28 100.0 33 ............................ CGACAAACTCGCCGTCCTGCTGCTGGTCGGAAC 3625043 28 100.0 33 ............................ CAGCAGGTCGACAGGCGGGAACAGGAGCCCTTG 3624982 28 100.0 33 ............................ TTGGAGAGTGGGCCCGATGACCGACACGATCAC 3624921 28 100.0 33 ............................ CGTTCGCGGCGCCTTCGACGCCCGCCGCGTTCG 3624860 28 100.0 33 ............................ CAGCGAGACGTTCCAGTTGTCCGACCGACAGCA 3624799 28 100.0 33 ............................ CCGGACGCGCCCGCATGGCTGCCAGGCAAGGAC 3624738 28 100.0 33 ............................ GCAGAGTGCGTCGGCTTGGTCGTCGCCGTGGAT 3624677 28 100.0 35 ............................ CTTCAACGGCGTCGGCCAGCCGAACCGCACGACCG 3624614 28 100.0 33 ............................ CAGGAACCCTTGAGGGTCAGTGCCGAGGGTGAC 3624553 28 100.0 33 ............................ GCGCCTTAGGGGGTTGGCTAAGGCTGCTCCTAG 3624492 28 100.0 33 ............................ CTGTATCACGCGATACAGATAAAAAGTCAAACA 3624431 28 100.0 33 ............................ CTGACGTACGCCATCCCACGACAACACAAGCGG 3624370 28 100.0 33 ............................ GGCCGAGGGCGCCATGGACTTCCGCAAGCAGAC 3624309 28 100.0 33 ............................ CAGCCCCGTGCCCTTGAGGAACGCATTCAGGTC 3624248 28 100.0 33 ............................ GCCGGGGTTGACGGCGGTCTACAACGGTACTGG 3624187 28 100.0 33 ............................ CGGGATCACCGACACCTACCTGTTGACCATTGA 3624126 28 100.0 34 ............................ CGTCTGCCCCGTCTCGCAGCTGCGCGGGGCCGGG 3624064 28 100.0 33 ............................ CGTCGACCAGGGCTGCCAGTTGGTGCCGCCGCT 3624003 28 100.0 33 ............................ CGCCATCTTCGCCACGCCGATCGCGGGCCCGAG 3623942 28 100.0 34 ............................ GGCCGCGATGAAGTCGGCGGCGTGGGACCACCGC 3623880 28 100.0 33 ............................ CCTTGTCACGATTCCTCCTCTGTCAAGACGTCA 3623819 28 100.0 33 ............................ TGGGTGGTAGGTGACGTCGTCTTCGGTGCCGCA 3623758 28 100.0 33 ............................ GTGGCTGCACGACGACGCGGCTACCGATTTCGC 3623697 28 100.0 33 ............................ CTCCCACCCCTGGGCCAGGATCGCGCCCGTGTC 3623636 28 100.0 33 ............................ CATGCGTGTGCGGGTCCCGTCCGACAGCGGTGC 3623575 28 100.0 33 ............................ CTGCGTCGGCCCGTCCGAGGTCGCACTTCCCGG 3623514 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ =================================== ================== 28 28 99.9 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : AACCAGAGGAAGCGGACTACGGCGATGTCCTTCAACTCTGGGACGGTGGGGACCGCAGCGTCGTTGCCGGAACCAACTATGACGAGGACGTTCCGTGGTAGTCATCGTCCTGACTGCCTGCCCTGAAGGCCTGCGCGGACACCTGACCCGGTGGCTGCTGGAGATCAGCGCCGGCGTCTTCGTCGGGCATGTGAGCACTCGTGTGCGCGACCGCATGTGGGCCACAGTCCTCGAACTTGCCAAGGACGGCCGCGCGATCATGGTCCACTCGGCACCGGGTGAACAACGACTCGCGTTCAAAGTCAACCGGCACCACTGGCAGCCAGTCGACGTCGACGGTCTTCAGCTGATGCTGCGTCCCTCCGACAGCAGAGAAGCCACACCGTCCGACCTTCGAAAAGGATGGAGCAACGCCAGCAAGTACCGTCGAGCCAGTCGCCGAAGCGGCCAGGGAAAGTGAAGCCAGTTCGCGGATCCTGCTAGCATTTCCGCAGATCAGT # Right flank : CACGGCCCGCAGCCGCTCCGGCAGGCACGTTGAGGTTCCCCCGGGCAGCGGACACCGAGATAGCGGGATCGGAGTGTCAACGACGGACCAAAACTGATCAGTGAGCGACGGATGAAAACTGACCACCCTGGCGTCGGTTAGTTGTTGCCAGCTCGGTCTTTGGCGAGGAGTTCTCGTCGTTGCCGGGTGCGGTAGGAGTCGCCGGTGAGGGTGAGGACTTCGGCGTGGTGGACGAGGCGGTCGATCATGGCGGCTGCGACGACGTCGTCGGAGAAGGTCTCGCCCCAGCGTCCGAAGGGCAGGTTCGAGGTGACCATGATCGAACCTTGTTCGTAGCGGGATGCGGCGAGCTGGAAGAACAAGTTGGCGGCGTCCTGGTCGAACGGGATGTAGCCGACCTCGTCGACGATGATGAGTTTGTAGCGGCGGATCTTCTTCAGCTCGGCTTCGAGCCGTCCTGCGTGGTGTGCGGCGCCGAGTCGGGCGATCCAGTTGCTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3799277-3798393 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035319.1 Rhodococcus sp. ABRD24 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3799276 28 100.0 33 ............................ CTCGACCAACTGCTGGCGTGCACGAGTGAAGTC 3799215 28 100.0 33 ............................ CGATGTTCCGCCGTCGACGCCGGCCGCTCACGT 3799154 28 100.0 33 ............................ CTCGTACTCGATTCCGTCGCGCTGAATCGGCTT 3799093 28 100.0 33 ............................ GGCCGGGCAGTCGAAGCGGAAGCGTGATGCTGC 3799032 28 100.0 34 ............................ CCGAGTTGAGCATCATCGTGCCGTTGAGGAGCAC 3798970 28 100.0 33 ............................ CTGCTGCCGGTATCCGATGGTGTCAGGATGCGC 3798909 28 100.0 33 ............................ CGGCCGGCCCGGAAACGCCACGAGGTGGATGTT 3798848 28 100.0 33 ............................ CCGACCATTCCGACGCCCAGCTCGTCGTCGGCG 3798787 28 100.0 33 ............................ CATGGCCATGTTCTCGGCCTCGAAAGACCACTC 3798726 28 100.0 34 ............................ TCGCCGATGGGTTCCCCGTAGAACGCTTCAACGC 3798664 28 100.0 33 ............................ CGCCTACCACTGCCCCAACTGCGGGCGCTGGCA 3798603 28 96.4 33 C........................... GCGTTGGGCTGCATCGGGAGAAGGACGCCGGGC 3798542 28 96.4 33 .............A.............. CTTCGCGGCCGCCCTTGGTGGTATGAGTGGCAC 3798481 28 96.4 33 .................A.......... TGGCGGCGTCTACATCGGACAGCCGACCACTCG 3798420 28 82.1 0 .......................ACGAA | ========== ====== ====== ====== ============================ ================================== ================== 15 28 98.1 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : GGCCTGGCTCCGCGAGACCGGAGCGGACCCGGCGAGGGTCAACGTCAACGGCGGCGCGATCGCCCTTGGCCATCCGCTCGGCGCGACCGGCACCAAGCTGTTCGCCACCCTGCTCAACGAACTCGAGCGTACCGGCGGACGCTACGGCCTCCAGACCATCTGCGAGGGCGGTGGCACCGCCAATGTGTTGATCGTCGAACGTCTGAACTGATGTGCACTTAGACCAAGACTTGCCTGGGACTGACGTGTGATCTTGGTCCGCTCGGTAGCGGGTGAACAACGACTCGCGTTCGAAGTCAACTGGCACCACTGGCAGCCAGTCGACGTCGACGGTCTTCAACTGAAGCTGCGTAGTTCCTAAAGCAGAGAAGCCGCGCCGCCTCCGACCTTCGTGAGGGATGGAGCAACGCCAGCAAGAACCACAGAGTCGGTCGCCGTAGTGGCCAGGGAAAGTGAAGCCAGTTCGCGGATCCTGCTAGCATTCCCGCAGATCAGTTAGT # Right flank : GAGCTCCACCAGAAAGCACGAGACCCGTTGTCATCGGCCTCCGTCAGCTGCACATCGCTAGTCTCCGTTGCAGTTCGACGCCGTCGACCAGCGCGCGGCGCGGATCCGGCCGATCTGACCATGCCGATCCACGGGCACGATGCTCGGCAACAACAACTCCCACATCTCGTCCACGCGGCGCTCGAGATCCTCGGTCCGGCTCAGCGCGCGGGAGATAACACGGGCGCCCGCAATTGCGCAGATCAGATGGCGCGCCAATACGAGTGGCGAGACCGTCTCGACAAGATCGCCCTGCTCCACCGCCCGCGCGGCCAGACGAGCGCAGCCTTCAGTCCACTCGAGGTACGGGTCGCCCGGGGCCCCGTTCAATGCCTCGACAGCCCCGAGTTCGACGGTGAGCCGAGCACCGGCGCGCACCACCGGGTGGACCAGAGTCTGCCGCGCCAGCTCGTGACACAGCATCACAACCTGCTCGAGACCCCGCGCATCGGATGCGGCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //