Array 1 13832-11279 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNMT01000013.1 Salmonella sp. SG203 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13831 29 100.0 32 ............................. CAGCGCACTACCCGGCAATAAATCTCCGAATA 13770 29 100.0 32 ............................. GCGGTATTCACGGATGTATCAGCGAGCAGATC 13709 29 100.0 32 ............................. GCCCGCCAATTTGGCAGCGCGATGACGCAAAT 13648 29 100.0 32 ............................. CTGATATCGCCTCGTTAATTTCTTTTACAGCT 13587 29 100.0 32 ............................. AATTAAATGAAATACGACAGCGCACGTTAAAA 13526 29 96.6 32 ............................A TCCAGTCGGCGATGTTAAACAGTGACGCGACC 13465 29 100.0 32 ............................. GTTGCCGGGATATGGCGGAGAATTATATATCG 13404 29 100.0 32 ............................. CAGAAAGCGGTCATCACCTCCGTAATTGGTGT 13343 29 100.0 32 ............................. AAATCGACCGAAAATTCGGACAGTACAACGTC 13282 29 100.0 32 ............................. TCCAGTGTTTATTTTAGACTCGCAACAATTAA 13221 29 100.0 32 ............................. GCGATTCCGTTGTCGGCCAGCTTCAGGCGGTT 13160 29 100.0 32 ............................. CTCCAGGCGGCCCCGACATATAGCGCTCATGC 13099 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 13038 29 100.0 32 ............................. GCCTTAGAAGATGACGACCTGATTTCAATTGA 12977 29 100.0 32 ............................. TAAATTTTCAAAACCAGCTTGTGATGGTTATA 12916 29 100.0 32 ............................. GACGCAGGGGTTACTGATGAACTGAAAAAGCA 12855 29 100.0 32 ............................. CAGCGGGAGGAAATTAACAGCCTGAAATCAGG 12794 29 100.0 32 ............................. GGAAACGCATATGAGCACACAAACAACCGGCA 12733 29 100.0 32 ............................. TACCGTTAACCAGCTCAATAAAAACCAGGTGA 12672 29 100.0 33 ............................. GTTGCCAGCGCAATTCCGTGAACACCCACAATT 12610 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTACGTGAAAC 12549 29 96.6 32 C............................ TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 12488 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 12427 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 12366 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 12305 29 96.6 32 ............................C GGATGAAAGAAGGGCAGGAAAAAATCTACTAC 12244 29 100.0 32 ............................. GACAACATCAACACGCAAATAAACCAGCTGCA 12183 29 100.0 32 ............................. CAAACGCCAACGCAACCACAACCCGCCATTAC 12122 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 12061 29 100.0 32 ............................. CAATTGACGAGCCTTCCATATAGGACGCCCGC 12000 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 11939 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 11878 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 11817 29 96.6 32 .................T........... TCATTCAGCGAACGCAGGAGAACCAGCCGCCG 11756 29 100.0 32 ............................. TTCGGGAATTTATTCAGCCAGACGACAGCCGA 11695 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 11630 26 89.7 0 ..........................--- - Deletion [11605] 11611 26 79.3 32 ---.AAA...................... CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 11553 29 100.0 33 ............................. ACCGCTTTGTCGAACTCTCCGAACTGCGCCAGC 11491 29 100.0 32 ............................. CAAACTGTGATTATGTGCTGACTCAATCTTTT 11430 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 11369 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 11308 29 100.0 0 ............................. | A [11281] ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32009-30089 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNMT01000013.1 Salmonella sp. SG203 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32008 29 100.0 32 ............................. CGCCATCATCGCGCAGCACTGGCTGGTGGATA 31947 29 100.0 32 ............................. TACGTTGACGCTGGCAAACGGCTCGATTTCGT 31886 29 100.0 32 ............................. CTGTTAACTCAGCGATGGGGAGTGTCGGTGGC 31825 29 100.0 32 ............................. CCTGGCGGCACACTCTACCGCCCGTGGTGGCA 31764 29 100.0 32 ............................. GCGGAAGGATTCGTCCATCTCACCGCGATCAA 31703 29 100.0 32 ............................. CGTGTTTTCATTCCCCGCCTCGCCTATTTTAT 31642 29 100.0 32 ............................. CCCCGTTAAGGGGCTTTTTTATGCCCGCCGTC 31581 29 100.0 33 ............................. GAGATGAATAACGCGATTTACGAGGTTACGTAT 31519 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 31458 29 100.0 32 ............................. CGTTGCAACTGGAGATCTTGCCCTGTATTGAT 31397 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 31336 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 31275 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 31214 29 100.0 32 ............................. ACGCGTTAGCCCGTCAGGAACGCTACTGGGAA 31153 29 100.0 32 ............................. TCGTAAATCTGTTTCAGTGTTTTAGCGCGCAG 31092 29 100.0 32 ............................. CCACGCAAGCCAGTACCGCCAGTTTTACCAGC 31031 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 30970 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 30909 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 30848 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 30787 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 30726 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 30665 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 30604 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACA 30543 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 30482 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 30421 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 30360 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 30299 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 30238 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 30177 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 30116 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //