Array 1 17858-17230 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDCD01000010.1 Enterobacter hormaechei subsp. steigerwaltii strain GN02044 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17857 28 100.0 32 ............................ GATGACCACTGAGGGCATATTCACCCCGAAAG 17797 28 100.0 32 ............................ GTTACGCCAGTCATGAAGTCAAGCTTCTCAGT 17737 28 100.0 32 ............................ TTTGCCACTTTTTGCACCGCCTTTTTTTGAAC 17677 28 100.0 32 ............................ ATGCTGAGTGACGCATCCTTGCAGCTGCGAAT 17617 28 100.0 32 ............................ GTCAGGCGTAGGTCAGATTCTTGATGCCCTTG 17557 28 100.0 32 ............................ TTGCGCATACCTGTTCTTTCTGTGCCCAGTGT 17497 28 100.0 32 ............................ GGAATGTCCTGCGGACCCTCCAGCTGGTTCAT 17437 28 100.0 32 ............................ AACAGCGACAGCGACTATGCCGTTAGGGCAAA 17377 28 100.0 32 ............................ ATCGGCTTTGCTCATAAGCTTGTTGATGAAGC 17317 28 100.0 32 ............................ GGTTACCGGGCGGCCGCGCGTCTGAATCATCC 17257 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGCGCCACACGTTCGCTCTCGTCGGGCGTTAGCGTCCGGCCCGTACTTTTGCGACGGGCAACGTTACGCTCGTTAATTCCCGTGACGCGTAAAATCTCCGCTTTCGACATGTCCGTCCACTCGTGAATATTGTCGAGGACGCTGACGGGTAATCCTTGATTGAGATATTCAATCAACCGCATGCCTCTGCTTGCAGGTAAACCGGCGTAGCGCCACAGCGTGTTATCAGCCGGCCTTTGCGCAGGAACCCATGTTCTCATGATACCTCCTGGATGATGTCATTTGTCATGAGTAAGTATAGCCATTTGTCAGGGGGTATGGAACGGGTGTTTTTTGTTCAGGGTGGGGTAAAAGAAGGATGGGATTTGACCCTAATTTTTGACCAAAATGTAATGCATTGATTTTTAGATTAAATATCCTGGAGCGCAAAAAAAGGGTTTGAGCAGGGATTTTAGCTTTTTTTGTATGAAAATCATGATGGTGGAGAGATATTATTTCA # Right flank : TCATCGAGTGTAAGGCTGTGTGATTTTATTGTGTGCACCACCGCACAACCAACACTAAAGCCGAAACAAAACCCAACCAATCGTTCAAATAATCGACTGTACTAACAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCCTCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTCTCAGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 28675-27336 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDCD01000010.1 Enterobacter hormaechei subsp. steigerwaltii strain GN02044 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28674 28 100.0 32 ............................ TCCACCGACGTTGTCAGTTATTGCGTTGGCCA 28614 28 100.0 32 ............................ TGACGCGTAGGCCTGACCATAAGCCTGCTGGA 28554 28 100.0 32 ............................ ATCACTGAGCCAATGCCCTGCAATGCCTGCAA 28494 28 100.0 32 ............................ TTGTAGCCCATCCTACGCTTCACCTGGTCGCT 28434 28 100.0 32 ............................ TCAGCCAGCGCGAAGCCAACCGCAGATGATAT 28374 28 100.0 32 ............................ ATCCGCTTTGAATGACGGAGTAACCATGGAAT 28314 28 100.0 33 ............................ TGCTGCCGCATCACAGACAACCTCAGGTAAGAA 28253 28 100.0 32 ............................ GGCTCGGATATCGATTTTTCTGGCATCTACAA 28193 28 100.0 31 ............................ CATTCAGACTGTCCGCTAATTTTCGCCTTTT 28134 28 100.0 32 ............................ TTATGCCGAGATATTACAGGCGCTGGCCAATG 28074 28 100.0 32 ............................ TGCAAAAGCTCCAGAACGCCATGCGAGAACTG 28014 28 100.0 32 ............................ ACTGGATTCATCGTTCAACTGCTGGCGTGGGA 27954 28 100.0 32 ............................ GTTTTAACTTTTCCTGGCGCTTTGTGAGCTGG 27894 28 96.4 21 ............G............... AAGGGCATGAAGCTGCGTCAG Deletion [27846] 27845 28 89.3 32 ..C..T......G............... TCGTCGTTACCAGGCAGCCTCTCTTTTCTCCC TG [27840] 27783 28 96.4 32 ............G............... ATCGAAAATGTAGCAGCTCTGACTGATGAATT 27723 28 96.4 32 ............G............... TCGAAAACGTAGCAGCTCTGACTGATGAATTT 27663 28 96.4 32 ............G............... GAAAACCATACTCGCCTGGCTGGATACGCGAT 27603 28 96.4 32 ............G............... AGTCTCGTTCCATAAATCATCCACTCTTTTAA 27543 28 92.9 32 ............G.............T. GTTGGCCACGGCAACCTGACCGAAACCGGCAT 27483 28 100.0 32 ............................ ACGAACGCTTAACATGTTCCATGCCCGCTGGC 27423 28 100.0 32 ............................ ATTTGTCTTGCTGGATGTTAGTTACTGAGCAC 27363 28 75.0 0 ......C...........T..A..CTCC | ========== ====== ====== ====== ============================ ================================= ================== 23 28 97.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGTGCTTATCTGGACGTAGTCAAAACCGAACTCGCAGAATCAATGAGTGATTTCCGGGTGGTTGAATTTGACGACGAGACGGAACGGCTGAAGGAAAAAGAGTGGCTTCTGGAGGATACCGAAACCAAATGCGATTACTGCCGGGCATTAAACCACGTGCTGCTGGTGTCGCATTTTGACCGCGAGATGCTGCCCCATCTGACAGGATTGCTGCATGACATTACACATTCGATGGCGGCAGATGTGGCTGCACCTGAATGTGGAAAGCCTGTAGTTCATATCATTAATTAAGTTTAGTCTCGTGCGTCGGGGAAGGGACTCCGGCGCGGTATGGCGAAACCCTTTTTTCGAGTAGTTCTTTAAGTTATTGATTTTTATTGTGCGAATAAAGGCCGCAGAAAAAAGGGTTTGAGGTAGATATGTTGATTATTTTCTTTTCGAACAATAAGATGGCGAAGATTTCTTCCA # Right flank : CCAAACATTCACTCCAACTATTTTAAAATCCACAATCATCACCACAATCCTCGTTGTATTTTTAATAAACTCAATACTCATTCATCCGACAACCATATTCCCTCACATATATTATTCATAAAAATAATACATTAAATATGTCAGAGATTTTTTATCTCGACACTCCGATAATTATTATTCATTTGATACGCGTCACATTTGTCTTCATCTTATCTCCGCTAACATACCCCGCATTCAACACATTGAAATAAAAAGCACTTGCTATGCCAGCGAACAGCATTACCCCATCCGACTTAAAAACCATTCTTCATTCAAAACGTGCCAATATCTATTACCTGGAGAAATGTCGTATTCAGGTAAATGGTGGACGCGTTGAATATGTCACTCAGGAAGGTAAAGAGTCTTTTTACTGGAATATTCCCATCGCTAATACGACGGCGGTAATGTTGGGAATGGGAACATCCGTTACGCAAATGGCGATGCGGGAGTTCGCGCGAGCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 44310-43860 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDCD01000010.1 Enterobacter hormaechei subsp. steigerwaltii strain GN02044 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44309 28 100.0 33 ............................ CGTTAACTCATAATCACTGACCTTTGTAACAAC 44248 28 100.0 32 ............................ ACTATCGCCCCACCTAAACCCGCCGACAAAGT 44188 28 100.0 32 ............................ AACTGGATTCGCACAGGCCGCCTTCAGGCAAC 44128 28 100.0 32 ............................ TTTGATTTGAATGGTAGTGGCTTGCCGATTGG 44068 28 100.0 33 ............................ CAGGTCTTGTTAATGATGCTGTAGCCCATCTGA 44007 28 96.4 32 ...........G................ TGGCTGTCGGTGTACGAGTTGGCATCGATAAG 43947 28 100.0 32 ............................ TTTCCCGATATTCCTCAGCGATCCGCTGCGCC 43887 28 75.0 0 ............A.......TAGGC.C. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.4 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CAGGAACCTGCACAGACGGCGAGTTCACCCGTAAGCTGCGCTTCGGCACCGGCGGCAAAGGCGGCGACTTCTTCATGGCGGGTGGGCATCCACTCAATAGTTTTCATCTTGTTAAGGCTATCGCTGAGTCCGTTCAGAGAATCGCCAGTGACGCCCCAGATACGCTTTACGCCAGCCTGCTCAAGGGTTTTCGCTATGTATGCAGCCACAGTTTGTTTCATGGTTGTCCGTCTCCTTTATGTGATATCGCTTACAAGCTTAGAAGAAAGTCGCTGTATTGCCTGCTCAGTATTCCTTAAGTACAGGTGGTTTTTCTGCGCGACGCGCCGCCAGCGGGCTGAGGTTGGGGCGGGCGGAAGCGGGTTTGCAGACCCTTTTTTCCTGATGATGCATAAGTTATTGATTTTATATGGTTGGGCTGATGGGGAATAAAAAAGGGTCTGGAGGAAGTTTTTGAGGTATTGGTTTATCAGACAAAGGGATAGGTGTAGATTGTTTCA # Right flank : ATGTAGGCCGGGTAAACGTAGTGCCACCCGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGTTCCAAAGGCAAAAGCGCTGGCCTGCACGGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGGTTACAAAGGCATATGCGCTGGCCTGCATGGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGAGTTACAAAGGCAAATGAGCTGGCCTGCACGGACAAAAAAGCCCGGTGGCGCTGGTGCTTACCGGGCCTACAGGTGAACCACGACAGATTATGCGAGCACAAGATCGCCCTGCGGATGGCACGAACATGCCAGCACATAGCCTTCTGCGATTTCTGCGTCGGTCAGCGTCATGGTGCTGGTGACCGTGTACTCACCGGAAACCACTTTGGTCTTGCAACATCCGCACACCCCGGCGCGACAGGCCGCTGCCACCGGTACGTTGTTGCTTTCCAGCGCTTCAAGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //