Array 1 596136-598034 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012381.1 Lactobacillus helveticus strain CAUH18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 596136 32 100.0 35 ................................ AATTAATTGATGACGGTGCCTTTGCAGCTGCATCA 596203 32 100.0 34 ................................ AAAGTGGTGGTTTACTTAACGAAAAAAAGAAAGC 596269 32 100.0 35 ................................ TTTACGAAAAGTTTTACTCAGATGAAAAGGATTGG 596336 32 100.0 35 ................................ CATCAACTTGTAGGCCCGAAGTATCATCATAGTTA 596403 32 100.0 35 ................................ AATTGGATACCAATCATGCCCACCTACTGTAGTAA 596470 32 100.0 34 ................................ AATAGGCTGGACTACTATCTGGGGTCATAGAAAA 596536 32 100.0 35 ................................ AAACTTAATTGTGTTCAGTCCAGTCGGAAAAATAG 596603 32 100.0 34 ................................ GCATGGGGAAACGTTTAGCTGTTGGCGCATTAGC 596669 32 100.0 34 ................................ AAATGACGACTTTGTAGCTGGTCAAACGTGGGCA 596735 32 100.0 35 ................................ AACATCATCAAGCTCATCAAGCTCATCAAGCTCAT 596802 32 100.0 34 ................................ ATGTTGCTATTAGTATCAGTATCATCACTAGCTT 596868 32 100.0 34 ................................ ATGTTGCTATTAGTATCAGTATCATCACTAGCTT 596934 32 100.0 35 ................................ TACTGATACTAATAAAGATGCAAAAACCATCAAAG 597001 32 100.0 35 ................................ AAGTGGCTATCTTCAAGTAGGGCTAAGCAAATCAG 597068 32 100.0 34 ................................ AGCTAATTGCACCGTACTAGGACTATCAGCAGTA 597134 32 100.0 34 ................................ TTTTGCCTCAAGCACGTATTGACGAATTGGACAA 597200 32 100.0 37 ................................ CTTTTTGTTAGAAAATTAAACATCTTTGGAGCATCAA 597269 32 100.0 34 ................................ TCTTTAATTATATGACTTAAATACGGTTTTGATG 597335 32 100.0 36 ................................ TCTGGTGTCCCATATGTCATGGGTGCTATGAGTAAA 597403 32 100.0 35 ................................ TTACAAAGAAAACCGATAAGGCAACTGGCGCTTTT 597470 32 100.0 35 ................................ TAATGAAGATAATGGTGGCGAAAAGACTTGGGAAA 597537 32 100.0 35 ................................ AGCATCAACGGCTCTAATTATGTCATTGCCGGTTT 597604 32 100.0 35 ................................ TCCAAAAAATCACGGTACAAATGATGAAACTGCTT 597671 32 100.0 34 ................................ ACTAACTGGAACATCCAAGTACTGTGCGGAAACC 597737 32 100.0 35 ................................ ATCGGCTAATTGCTTTTCAAGTGAATCAGCCTTTG 597804 32 100.0 34 ................................ ACTGAGACGCTAGACGCTATTAGATCACAGTCAC 597870 32 100.0 35 ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 597937 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 598003 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ ===================================== ================== 29 32 99.9 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGAAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 719184-719395 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012381.1 Lactobacillus helveticus strain CAUH18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 719184 29 100.0 32 ............................. TGGACTTCAAATTATTATCAATCAGACTCTGG 719245 29 100.0 32 ............................. AACTCCGGAGCCAGAACTTCTAACCCAACTAC 719306 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 719367 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : CTGCAGACATCGAGTGACCAGCCATCTTCAAAGAAGTGCCGTTGAACGTAATCAATAAATCTGTGCTTTTTGAGAAAGTCAGATTTTCGACCACAGTGCTGACGATGGTTTTGATAAACGCTTTGACCTTGCTGGGCTTTATAACGTTTGATATTGCCGTGATACAGCTTAACGGTTCCTCGCTTAATCTCATAGTGAATTGTACTAGGAGAACAACCGATTTCTCGTGCAATGGAGCGTAAAGAGCAATGATCTTTCAAACGAGTTTGAATAATGACCCGTTCTTCGAGCGATAAATGAGTTCCTTTTTTGCGCTTGTCCATGATAGAATGTAGTGAGTCCATTTTGACCTCCATAGATGTTTTTGTGGTTATTAACATTCTATCAAACAGGTCCAAATGGACTTTTATTTTCTACAAAGTGTTCAAGTTAATTTTACAATCGGCGAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : TCAGGTGTATAAGGCATTTAAGTATCTATAGTCTAATTATTTTAGAGCATAAAAAAAGACCCGCCAAAAAATAGCGAGTCCGTGTAAGGAGAATAAGAATGAAGGAGAGGTAAATCAGCCCTCGTTTCTTAGTTTATATTAGGAGTGTTAAAATGGCAAGAACTGAACCAGAAAAAAAAGCTCAAAAAAAATATTATTTGAAAAACAAAAATATGTACAAGATTAACTCCTATCGCTCAAGAGCTAAGAATTTCATTTTAAAGTATGCAACCACTGATGAGCTCATATGGCTTAGAGGCTTGATTGATGAAAGATTATCTAAAAAAAAATTTGAAGTAGCAATAACTGATTGAGTTTGTTGGTATTCTCCACGTATGTGGAGGTGATCCTTAAGAGGGCGTCAGGTCAGTTTATACGGTCAAGTATTCTCCACGTATGTGGAGCAACCAAAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //