Array 1 6-157 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNWN01000003.1 Selenomonas ruminantium strain KH1T6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 ............................. CGGTCGGGGGCGTGGGATGACCTGGTGAACGG 67 29 100.0 33 ............................. ATTAACGACATCGAGAGTTATCGCACTCCCGAG 129 29 89.7 0 ..........................TTT | ========== ====== ====== ====== ============================= ================================= ================== 3 29 96.6 33 GTATGCCCCACGCACGTGGGGATGAACCG # Left flank : GGCACG # Right flank : TGGAAAATTTTAGCAGGAATTTCATAAGGGGAGGAGAATAACTATGCTTAAAGATGGTATATAAAAATCCCAGAGGGGGTGGGGATTTGAAAAAGGACTTGAAGGAACTTCCGAAGCTTCGTGATAGCATCAGCTATTTTTATGTTGAGCATGCCATTATTGATCAAAGTGATTCATCCATTATTCTTCATCGTATCACAGAGGATATTCCTGTGCCGGTGTCTGCTCTTACATGTTTGATGATAGGTCCTGGTACAAAAATTACCCATGCAGCCGTGAAAACAATTTGTGAAAACGGGTGCATGGTGGTTTGGTGTGGAGAAAATGGGGCCAGGTTTTATGCTTATGGACAAGGAGAAACTAGAAGTGCGAAAAATACATTGATTCAGGCGAAATGCTGTATGGACGAAGAACTCCATATGCTTATAGTCAGGCGTATGTATGAGATGAGATTTCCTAAGATGGATTGCAAGAATATGACATTGCAACAGATAAGAGGG # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATGCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTTCGTGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26736-28143 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNWN01000002.1 Selenomonas ruminantium strain KH1T6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26736 28 100.0 32 ............................ TGCATGATTTCAATGACTTCGCCGCTGACTGC 26796 28 100.0 32 ............................ TGCTGGCCATCAGGAAAATCAAGGACGGGGAG 26856 28 100.0 32 ............................ ACAGGTGAAGGCCATGTGTATCCGCATACAAG 26916 28 100.0 32 ............................ CGTACAAAAACGAAGCGACGTTCCAGGTGGGC 26976 28 100.0 32 ............................ TTCCGCATAAAGCGGGAGGAGCTAGAGCGGTA 27036 28 100.0 32 ............................ ATGCTCCGTGCATCTGTTTCCCGCGAAAACCA 27096 28 100.0 32 ............................ AATTGCAATGACAAATGCGAACATCGTGATTG 27156 28 100.0 32 ............................ ATCAAGACATGGAGGCCCAATACCGGCGCACC 27216 28 100.0 32 ............................ TGCACTGATATCCGCACGGTTGCCCTTGCGGT 27276 28 100.0 32 ............................ TTCGTGACGGTTTCCTCGACCCTGCCGTTGAT 27336 28 100.0 32 ............................ GTATGAGCAAATGCTCCGGCTCTATGCCAAAT 27396 28 100.0 32 ............................ AGCAGGAAAAATGATTGCCACCAATCAGGGCC 27456 28 100.0 32 ............................ ACGGCGCAGAACTGGCGGCGAAGTATGGAAAG 27516 28 100.0 32 ............................ ATACTCAAGTGGTGTATGTCCAATGTGGCGGT 27576 28 100.0 32 ............................ TGGCAGGGAGACCTGTACCGGAGTGATATCAT 27636 28 100.0 32 ............................ TTTCCCGGGCTTTTCGGTCTCCCCGTCCTGCC 27696 28 100.0 32 ............................ ATTTGCTCGACATGACAGATTCCTCCCTTCAC 27756 28 100.0 32 ............................ AGATGAAAATATAACGCCTGGGTCGTCAAGGG 27816 28 100.0 32 ............................ AGTGAATAACCCTGCTCCGCCTGCTTGTCGGT 27876 28 100.0 32 ............................ AGCACCGTGGACATGCCCTTGATCAGGCTCTC 27936 28 100.0 32 ............................ GCTGTAAAACAGCAGGAGGAATAGGGCCTTGT 27996 28 100.0 32 ............................ AGACAGCAGCGCATTAGGCCAGGCTGTGCGGA 28056 28 92.9 32 ........TT.................. ATGTGCAGTTAGGAGTTTCCCTTTCGGGAAAC 28116 28 75.0 0 ....................GAATTC.C | ========== ====== ====== ====== ============================ ================================ ================== 24 28 98.7 32 GTTAACCGCCGTGTAGGCGGCTTAGAAA # Left flank : ACAAAAGAAGAACTGCTAGCTCTGAATATGCAACAACAGGTGGCCAGGTATCGCGATTATGTCCATGTAAAGGGAATCGCCAAGGTGCCTGAGCATGTTACATGGGCTACTTTCAAGCGCCGCCATAGTAAGGGGAATCCTGCTAAACTAGCAAGAAGATATGCCACGAGGCATAATATCTCTTTTGAGGAGGCTATCAAGATTTTCCCGGAGCAGGTGCATAGAAAACTACCTTATGTAGTGCTTCGCAGTGATAGCAACAAGCATGAGTACCGTTTGTCTATAGAGAAAATAGACAAGGATGAAGTCAGCGCGATGGGGTTCGGGAGTTATGGGCTGGATAATCAGTCTACTGTGCCTGTGTTTTGACCCAAATTTTTGGATTGCCTTCAGAAGCCAGTAAAATCAAGGCTTCTTGAAGGGTCTCAGAATTTGGGGTAAAATAGGGAAAAGTGCTGTGATAGCAGGTGCGATAAGGTAGTAGGCAGCAGTTTTTACAG # Right flank : CTATTGGCGGTAATGTTAATATTGTATTCCCAAAGAAAGAAGCCTGAGACATGAAAAATCAGTATTTTGGAGATATCGGCGACTATGGGAAATATGGATTGTTGCGATTTTTGGCAGGACATGGGGAAACCGTTGCCGTTAACTGGTACTTGACAAAAGATGATCAATCCAATGACGGGAATATTCGAGACTACCTCACAAAAGAGAAGGATCGGAGATACGATCCCAATTTGTTTGATGTGCTAAAGAGAATGAGTGCTCAAAACAAAATAGATGTCTGCGAATTCGCGGCACTTGGTATGATTCCTGGTGCAGGATACTTCGATAAAATTGTTGAGCCGGTAGTGTCGACACTGACTATTTCAGAAAAACGGGCAACGCGTAAACAGTGGCATCGGGAAGCACTCGCAGTTTGTGAAGAATATGATCTCGTATTTTTAGATCCGGACAATGGCTTGAGAGCAGGGATACCCACTGCAAGGAAAGATGCGATGAAGTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCGTGTAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 63308-63808 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNWN01000002.1 Selenomonas ruminantium strain KH1T6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 63308 32 96.9 36 ......................T......... TTCTCACGCCATACAGGAGCAGTACCCTCTGCAAAT 63376 32 100.0 34 ................................ AATGAAGAGAAGCGTCATATCAACATCACGGAAT 63442 32 100.0 34 ................................ TGCTATATCATGGACGAAAATGTATTCTATGATT 63508 32 100.0 35 ................................ TCGGTAATTTCGGTGTAGCGTCCATCATCGGAAAT 63575 32 100.0 34 ................................ TGGCAAGTTCCGTCAGGACGAAGATACTGCCTGA 63641 32 100.0 36 ................................ AAGGGAGTGTATAGCCAGGGCATGTGCCTGCCGCTA 63709 32 96.9 36 ....................A........... AATCCGGTCTATAAAACCCATTGGATATATGACAAG G [63722] 63778 31 87.5 0 ........T..A.-.......A.......... | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 97.7 35 TGACGCCCCCTGTAGGGGGCGGGGGTAGAAAT # Left flank : GAAGGGTGGCCGTACCATGGGGAGTAAGTATATTGTTCCTTATGGCTTGTATCATGTGGAGGGCTTTATATCTGCGAATTTAGCTAGGAAGTCGACGGGGTTTTCTGAGGAAGATCTTGAGCTTTTCTGGGAAGCGCTCATGAATATGTTTGAGATTGATCATGCAGCAGGTCGTGGCAAGATGGCAGTTCGGAAGCTTATTATTTTCAAGCACGATAATGAACTGGGGCGCGCACCGGCGCATAAGCTCTTTGAGCGGATTGATATCCATCGCCGCGATGTTGGCAAAGTGGCACGGTCTTATGGTGATTATGTTATTGAAGTCCATACGGATAATATGCCGGAGGGGGTTACCTGTGAGATACGTGATTGAAACTTGCGAACCTGAAGCAAACATAGCAGAGGCAGCAAGTAAAATAAGGTATCGTGGTCCGCCTAAATGCCGGTTCGCGAAAATGCCTCTCTAAAAGGTTGCAGTTGCTGTGACGAAAGGGAGGCCT # Right flank : TAATTATAAAAAAGATTTTGTCCGTGAACAAAGATAAAAGATTATCCCCGGGAGAACTGGGGATAATTTTTTTGATGCGCAACCTCCTGCCTTCAGTGTAAGGTGGGGGTAGCAACTAAGCCCGGGCTGCGTAAATCAAAAGATTGGGATTGAATGGTTGCCCTCCTCCTTGAGGGCTTAGTATAGATAGTGCCCGTCCCTAGGCACGTCCGTCCATGGTGGCCTGTGGTGCCCCCGTCCTTGGGGGCACGCTGCTGCACACCGTCACGTTCTGGCCGCAAAGCCAGCCCGCCACCGTCCTCCGATAATGTTCTTACGGCTATCATTGCCGGAATACAGAAGCGGAGGGGAGAGGGGGCAGCCCCCGCCACCGATAGCCAACATTATCGTAGGACTAAAGGCGCTTCACGCTTAGATTAGCCCTGCTAAGCCCCCGGCCCGCCATCACGGCGGGCCTTTTCTGCTGGTTGCGTTTCTTGCCGGACAGCACGCCAGCCATG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGACGCCCCCTGTAGGGGGCGGGGGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.80,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 255400-255153 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNWN01000002.1 Selenomonas ruminantium strain KH1T6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 255399 31 100.0 43 ............................... GATGAGCTTGAAGCATCTCTACCTTCTAAGGTTCTCTGTTACG 255325 31 100.0 39 ............................... GTATTAACTCTTTAGATTCAAAGGGAGGAATCTGTTACG 255255 31 100.0 41 ............................... CGGATGGCTTTGCCGGTCTTGGCTTCTTCATCACGGTTACG 255183 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =========================================== ================== 4 31 100.0 41 ATACCGCAAGCGGTAAGGGCTGGCCATCAAC # Left flank : CCCTGCTTTTGTCATTGCCGTACATCCCTCAATACTCACGGAACTTCACAAATTTGAAATATGATACCTTGCGAGATACGTCGCCCTGCCATTCCTCTCTGGAAAGGCGCTCGCTACAGGCTGCCAGGACAGTTATACCATGCTCCTTTAGAAGTCTAACCAGCCCATAAGTATAGGTAAATTCTCCCTGACAAAGCACCGCCGCCGGAGACATAGCCATGATTTCTGAATGATACTTCTGGACAACCTCATTGATTTTTTGCTCACTGTAATCAGCCTGCAACTCTGGAAAAGGCATATCCATAATGCCACCATAGGCAAGCGCTGCCTCCTTTCGCTCCTGCGACCAGTTAGCCGAAGGGTGATTACTGTGATTGATGAAAACTGACATAATAGCTCCTTTCGTTATCTGCTTTAACTCTCTCACTTGATATAACCACTCCTGAGAAGTGTTTCTGGCATTTTAGGCAAAAAAAATACAGGCTATACGCCTGTAAAAA # Right flank : TCTGTCGCCCGGAAAGCAGGTGAGAGTTGGGCTGAAATCCTGCTTTTTGAAAAGCTTCGCCATTTTTCCCGGAAATCCTTCCTGCTGCGGAAAAACTTGTTTTCAAAAACATAGATCCAGACCTCCTCTCCCCTTGCTACATAAGGCTTCAGCCGTGTTTTGTAAAAAACTGAAAACCTCGACGGGAAATAGCCGATTCCCAGACCCAATCAGGATTTTCAGTTTTTCCTGCAGGCTTCCCTCATATCTTCTCCTATTCTTCATTCTGAGCCCAAACATCTAATCTTCCTTTATTTTGAGGATTTCAGCGGGTATAGCGGCTCCTGACGGAACTGTTCTACCCGCTTTTGTATGAGCTGCCGGGGAGAGAGACCGTCATACTCCTGATAGGGCTTCTCCATGTAGTCCTCATATCTATGGAACCAGAGCATGCGGGCTTCATCGGTAAGGCGGCACTCATCTTCATCATTTTTCTCAAAATCCTGCAGCTTATAGGTTTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATACCGCAAGCGGTAAGGGCTGGCCATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //