Array 1 473159-474651 **** Predicted by CRISPRDetect 2.4 *** >NC_021814.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 473159 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 473220 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 473281 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 473342 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 473403 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 473464 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 473525 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 473586 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 473647 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 473708 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 473769 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 473830 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 473891 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 473952 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 474013 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 474074 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 474136 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 474197 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 474258 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 474319 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 474380 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 474441 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 474502 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 474563 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 474624 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 490784-492565 **** Predicted by CRISPRDetect 2.4 *** >NC_021814.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 490784 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 490845 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 490906 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 490967 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 491028 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 491090 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 491151 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 491212 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 491273 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 491334 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 491395 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 491456 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 491517 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 491578 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 491639 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 491700 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 491761 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 491822 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 491884 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 491987 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 492048 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 492109 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 492170 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 492231 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 492292 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 492353 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 492414 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 492475 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 492536 29 96.6 0 A............................ | A [492562] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCTGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //