Array 1 224591-224012 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDL01000008.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIB .SLX_12186.D707_D507.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 224590 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 224529 29 100.0 32 ............................. ACATAAACGGACGCGCGGGGATCCGAATTTTT 224468 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 224407 29 100.0 32 ............................. CTGGCCCCGCCCCGTGGTGTTTTTCGAAATTT 224346 29 96.6 32 .............T............... GCTGATAGCCAACCTGTAAGTGATCGTGATGA 224285 29 100.0 32 ............................. GTGCGAAAAATGGCAAAAGGATCGAACAAAAA 224224 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 224163 29 100.0 32 ............................. GAACAGATCACGCTCGGCGACGCGGCGGTTAT 224102 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 224041 29 96.6 0 A............................ | A [224014] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGCGATGGAATTTAGGGGGATATCTCAGAATAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72924-75880 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDL01000016.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIB .SLX_12186.D707_D507.HJ72NBBXX.s_1.r.16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72924 29 100.0 32 ............................. GCGGTGCTTCGCTGGTGGACGAGGCGCTAAAC 72985 29 100.0 32 ............................. AGGCTCAGGAGCGAGAGCAGTTAGCGAGCAGG 73046 29 100.0 32 ............................. CATACTGCGGAACACAGTTCCACCCATATTGG 73107 29 100.0 32 ............................. TTAAAAACACAAGTCTCATTATGGGAAAAAAT 73168 29 96.6 32 ............................C AATCGCGTTACGCTCAATGCAGGGAACCTGGA 73229 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCGGCTACTCTT 73290 29 100.0 32 ............................. GGTTGTCTGGTAATGCTGCATATTCACGCCTC 73351 29 100.0 32 ............................. AGCCGTTTATATTAATAATGTAACATGTAGAA 73412 29 100.0 32 ............................. GCTACGGTAATGCCATAAACGCACAGGCTGCT 73473 29 100.0 32 ............................. CAATACGACTGGACGGGATTTGATTCATTAAC 73534 29 100.0 32 ............................. GCCCACAAGGAAGGCGCTTACTTTGTTGCTAA 73595 29 100.0 32 ............................. AGATCTCTACGTCGGAGAATTCTGGCGAATCC 73656 29 100.0 32 ............................. GGCTATCGCAGCGTTCGTGACCTGATAGCGTC 73717 29 100.0 32 ............................. CCTTTAAGGGAGAATGCCCAATTTGCAAGCGT 73778 29 100.0 32 ............................. ATTTTAGCAGTTCCTCCGCAATATACATTGCC 73839 29 100.0 32 ............................. GCGTCAGCGTGGCGCGCGTTGAGGTATTGCGG 73900 29 100.0 32 ............................. TTGAACCGTCAACTGGAATTAATAATTTAATT 73961 29 100.0 32 ............................. CCGTTAATTTTGCTGATGGAAATGATAATGCA 74022 29 96.6 32 ............................T GGTCGGAGGCACGAGTGGAATAGGCGCGATAC 74083 29 100.0 32 ............................. ATGCGGCGGTAGTGTCATTTGTGCCAGTCTGA 74144 29 100.0 32 ............................. GGGTCTGGTCAGGGAACTACTGATACATATTC 74205 29 100.0 33 ............................. CCGGAAAACTTCCTGTCGAGCCGCACCTCATGC 74267 29 100.0 32 ............................. CTGCCGTCATTTAAAATAACCTGAATTGTATA 74328 29 100.0 32 ............................. AATTTTCCCTTTGCGTTAATACTCCATCGGAA 74389 29 96.6 32 ............................T AATTATTGACCCAGACGGAGGATGGAGTAGAG 74450 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 74511 29 100.0 32 ............................. TTAAAACGTTTAAATCCATTAGAAAATAAATC 74572 29 100.0 32 ............................. AGATGGCACAGAATCAGGTTTTTCAAGCGCCG 74633 29 100.0 32 ............................. CTGATCCAACTTACCAAATTAGTGCTGGTAAT 74694 29 100.0 32 ............................. GGTATCAACAAACTGTTATTTCATTCATTACG 74755 29 100.0 32 ............................. GATTATTATCTGGTGTTGATATAAACGATAAT 74816 29 100.0 32 ............................. TTAATATTAATGATTATCCTTCCGGAGTAACA 74877 29 100.0 32 ............................. ACCGCCAACTAAGCCAGCGCCAAACCCACCAG 74938 29 100.0 32 ............................. GACTTTGTAACCGATCCACATAATACACATAG 74999 29 100.0 32 ............................. GCGTCTCCATGCCGTTGATAAACATCCCGCCC 75060 29 100.0 32 ............................. ATCAGTTTCCCGACAGTATTGCCGTTCTGCTG 75121 29 100.0 32 ............................. AAAAAATGGAGCGCCTGCAGTCGACGTTTACC 75182 29 100.0 32 ............................. ATCCTGAATATGGAACATGTCGGATAACGTTT 75243 29 100.0 32 ............................. GCGCCAACCATCAGGGTTTAACCAGGCGATGA 75304 29 100.0 32 ............................. GCTTCGCTAAATGACACGGCTAACTCAGTAGC 75365 29 96.6 32 ............................C TCACAAAACCGCTGCGCCAGCTTAATGCGGTC 75426 29 100.0 32 ............................. TCCGAAACCGCCGTCGCACTGGCTGACGGTGT 75487 29 100.0 32 ............................. CAGTGTTTCCCGATGCCTGAAACTTTCCATGA 75548 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTTGGTGAATGGGA 75609 29 100.0 32 ............................. CGTTTTCTCCGGAGAACCGCTACAAATACTAA 75670 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 75731 29 100.0 32 ............................. AGAACCATCTTTCTGCGATTTATACTCAACGA 75792 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 75853 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84321-84959 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDL01000016.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIB .SLX_12186.D707_D507.HJ72NBBXX.s_1.r.16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84321 29 100.0 32 ............................. CGATTCGCGCTGGATCATCTCGTTCGCGCCGC 84382 29 100.0 32 ............................. CGCCCAGATACTGGCAGACCAAATTGCAGCAC 84443 29 100.0 32 ............................. ACGACGTCACTAACCGAATTTATAACCTTGGT 84504 29 100.0 32 ............................. GACGCATGGGAGCACGGTAAACCACTGGCGCA 84565 29 100.0 32 ............................. CAGCCGCCTGGCAGAATAAACACCGCGGAACA 84626 29 100.0 32 ............................. TCAACGAGACACGCAGCGCGCTGGACGGTTTC 84687 29 100.0 32 ............................. GGGATTTTGATTCCTGACGATGTTTTGTGCCG 84748 29 100.0 32 ............................. CTGAGCGTAATAGGGAGGAATATGCGCAAAGC 84809 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 84870 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 84931 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGTAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATATTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAA # Right flank : CTTTGGTGCCTATTGGCAACCCCATTAAGTCCGTGTTCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //