Array 1 438826-440037 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734705.1 Planktothrix mougeotii NIVA-CYA 405 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 438826 37 94.6 174 ................TG................... AAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGAGATCCTTTTCCCCTAGAACAGAGTGATCT 439037 37 100.0 36 ..................................... CCCCTTGTATTCGTGAGTGCCGATTTATCCGTAACG 439110 37 100.0 35 ..................................... TATGATTTGTTAAAACCTGAGTGTGTAAGTTTTGA 439182 37 100.0 37 ..................................... GACAGATGTACCGTTGGGGTTTGATTGGTCTTATCAG 439256 37 100.0 37 ..................................... TTTGCTCTTGCTATTCCTGCTGGTGCTAGTAGTCTCC 439330 37 100.0 37 ..................................... TTAAGAATAATGAGTTAGTAGACTTAGAAGATAATAG 439404 37 100.0 43 ..................................... ATCGAAAAAGCAGCGACCGCTAGAGTACCAAGAGCCGTGATTG 439484 37 100.0 38 ..................................... AACTTTTAAACTCATCTAAGAGGACTCTCACTTGTTCC 439559 37 100.0 37 ..................................... GGCTGGCGCGTGCTACAACTTCAGCCCCCTATAGTAA 439633 37 100.0 36 ..................................... TGATAGCATTATTTTTGCCTCATTGTGTGCTTACTT 439706 37 100.0 35 ..................................... CAAGGTGTCAACTTGGCAGTATTTCTTTCTCCTTC 439778 37 100.0 42 ..................................... GGAACATTATAAAAAGTTAAGTGTAGATAAGGTATCTGCCAA 439857 37 100.0 35 ..................................... GCAAGTTTTAATGTACTCAGATGATTTCAGTAGCT 439929 37 100.0 35 ..................................... TTAGTGACTCTATAAAGCCTATATCTGGTAATGGT 440001 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 15 37 99.6 47 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : ATTCTTGTAAGGCTAATTCACAGGCGGCATAACCAATATTTCCACAGGCGGGGGCGTTTAAACCTGCGGCTTGAAAAATTGCGGTGGTGAGGGCGGTGGTTGTGGTTTTTCCGTTAGTTCCAGTAATACAAACCCAGGGCAAATGTCGCAGATTTCGCCAGGCTAATTCTAGTTCTCCGATGGTTTCTATACCTAAATTTCTGGCGGCTTTTAACCCCGGACTATCCCAAGGAACCCCAGGACTAACAACTATTAAATCTAGGGAAGTATCGGGTTGAAAATTATGTCCTAACTCGACTTTAATTCCTTCGGTTTCTAATTGTTGTTTTTGGGTTTCTAGGGTTGAGGAAGAATTGCGATCGCTTAAAATCACATCCCATCTTTGCAATTTTAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATAT # Right flank : GTCTGCCGTTTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATACCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATAATAAACCGAAACCCGCCTCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATTGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGTTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTCGGAACTAACTGT # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.96, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 401868-400406 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734704.1 Planktothrix mougeotii NIVA-CYA 405 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 401867 37 100.0 39 ..................................... ATCTACCTCTCCCGCATCGGCACGGTCTTTATAGTTCTG 401791 37 100.0 38 ..................................... GTCCTAATAAGTAGCACCACGAGGCATCGAAGCTTTTT 401716 37 100.0 41 ..................................... TTTCCGCTTCCCACCCCATGCCCATTCAACTGTAATTTTAT 401638 37 100.0 39 ..................................... CAATTCATATTTATAATTTTGTAAACGGATACATTTCTC 401562 37 100.0 40 ..................................... GTCCCCCTATTAATTAGGCGATTTTGATAAACTTGGTTAA 401485 37 100.0 37 ..................................... GAATCTGAATATCCGACCTGGAAACGAGGGAAAAATA 401411 37 100.0 36 ..................................... TGTGACGATTATAAAAACCAGTTAGAACATCGGTTC 401338 37 100.0 39 ..................................... ATCCGTCCGATCCTCTGGTGACTTCAACGGATTTGACAT 401262 37 100.0 36 ..................................... GATTTAGCAATTTATTTATCAATGCGAGATTGTTCA 401189 37 100.0 37 ..................................... ACATTTAAACCGGGTAATTAACCCGGCTTAGATTAAA 401115 37 100.0 39 ..................................... ACTCAGGACACGCTAGTTTTAAGATGCTAAAATAGTCAT 401039 37 100.0 37 ..................................... TTAAGCGAAATGAAACGCTTAACTAATAACAACAATA 400965 37 100.0 39 ..................................... ATTGTGGGATGTGCAACCAACAAACAACCCAATAACTAA 400889 37 100.0 36 ..................................... CAAAGGATGGAAAACCAAAAACCAATACAATTAAAA 400816 37 100.0 36 ..................................... TTTGGTTTTGACCGTCTCAACTTCTCGCTTTTCAAT 400743 37 100.0 36 ..................................... CTCGTAGGCGGTGGTGATCATAAACCTTGAATCCTT 400670 37 100.0 46 ..................................... TTAATTGAAAGATATTTCCCGCTAAACTCCAACACGGAATCCTTAG 400587 37 100.0 34 ..................................... CTCTTCTTTCTTCTCACCGGATGCAATCATGTCA 400516 37 100.0 37 ..................................... CGGACAGGATTCAATGTCAAATCTTGGCTGAACTAAA 400442 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 20 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : CAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAATAATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAATAATTGGTTAATTCTTTCTTCTTTTCTTTTTCTTTTTTTAATTATTAACTAATAGTTTGAGCTAACTCCAGTGGGAACGCCAGGGCTGTTTCATTAGCCAAAAGTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGATTTATTGTCGGGGAATGATAGCCATTGATTATGAGAAGATTAAGAATTATAGCAATCCTATTTGAGTTGTGTAAAAGGGAACAGGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATA # Right flank : TCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGCCCTCGTTATTGCAACAGATTATCAATAACTAATCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAGTAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCATGACCTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGTTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGAGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCCGTAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAATACTGGTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 1896588-1897675 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734704.1 Planktothrix mougeotii NIVA-CYA 405 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1896588 36 100.0 42 .................................... GTTCCCACATCGTATCGTAGTCAGTAGAATTAGAATTAACTC 1896666 36 100.0 36 .................................... GAGAGCTTGGTTGGCAGAAGCCGAGGCAGGAGTACA 1896738 36 100.0 36 .................................... TTTGTAGCCCCCAGTTGGTATGTTAAAATTCCGTTG 1896810 36 100.0 39 .................................... TTCAGGGCTTTGTAGGCGTTCATCCACTTATTGTTTTTT 1896885 36 100.0 39 .................................... TGCGCTTGATTGCGTCTTTTTTTGAACATCCCCATGCTG 1896960 36 100.0 40 .................................... TCATCAAGGGGTGAATCTTTCAAGTCCATTTGGTAAGGAA 1897036 36 100.0 46 .................................... TCATATTCAGGAAAAGCTTCTTGGATAAAACAATCAACGTTTTCTA 1897118 36 100.0 44 .................................... AAGGGACGCTCTGGCATCACTCAGGATTTTATTCATTTGTGCTT 1897198 36 100.0 38 .................................... CCAAAAATAAGGGAGTCAGGAGAATTGATTTGTTTTAT 1897272 36 100.0 40 .................................... CTTCATTTGTCGTGATTCATTAGACATGATTGATTCCCCT 1897348 36 100.0 37 .................................... ACCATCATATCCATGACTTTTTTAACGTTTGATAGAC 1897421 36 100.0 38 .................................... TATTCGCCTTCTGGCAGTTCAGTGGGCTTCACGATTTG 1897495 36 100.0 36 .................................... TTGAAGACTTTATGCCAGTTAATTTCAACACCCCAA 1897567 36 100.0 37 .................................... TGGATTAGGCTGTAGCTTTCCGTCTCAATATCTCCAC 1897640 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 15 36 100.0 39 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : ACAAATCCAGAATTAGCAAAACAGTTAAGAGAAAAAGGTTATCAAAGAGCCATGACCCAATACACCAATAGGGCACTCGCTCAAGAATTGTTAATTTTTTATCAACAATTACTTGATCGCTGATGTTATTCTATATTATTGCCTATGATATTCCCTGCCATAAACGTCGTCGCAAAGTGGCGAACTTATTGGGGTGAATTTAGCTGAAGATAACCTGCGGTTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATCTTTTCTGCGAGGCTCAGGTAGAATCGCTGTAATGCTGATTCTGTTGTTGGTAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTTTGATTAAGGAGTAAAATGTTGTTTCAGCCGATGAAATTTCTGAGCCTCGCAAACCTGATCTGGACAACCGATGACGTATGGGTTTAAAATGGGAGGA # Right flank : CTCGTTGAAATAGATGGGGGGGGGTGGAGTTTTCTTTCGTCAAAAATTTTCATCAACCCCTTTAATCAATCGCTATTTAACGATTAATTATCCACTTAAATTAGAGCAAATAGACAAACTAAAAACTGGGTTAGATGGCTTTAGACCGTTTTCATATAAGCGACCAGCTAAAACCCATCTGCTCTTGTGATTACCCACGCAGAAAAAAAGATCTGGAAAAAGCTTGCATGATCTGGGTGGTTGTGCTACATTAATAAATTGTCGGACGCATAGCTCAGTTGGTTAGAGCACCACGTTGACATCGTGGGGGTCGGTGGTTCGAGTCCACTTGTGTCCATTAATTTAAAACTCCTCGGATTCCTGCACAGTGTGGATTCTCTCTGTCGAGTGTCAAATCAAAGCAATATTATCCTGAATATCCTCAATCCAATTAAAAATAGGTTGATCGGGATGCAGATGATAAACTTCTATATATAACTCTCTAACTAACTTTTGAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 70402-70000 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734708.1 Planktothrix mougeotii NIVA-CYA 405 scaffold00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 70401 36 100.0 37 .................................... ACCTTCTAAGGTTAGGATTTGTTGCAGTTCGGCTTCA 70328 36 100.0 35 .................................... TGAACACTAAAAATTGGGGTCGGCGCGAGGGATGT 70257 36 100.0 36 .................................... GTAACTGTGAGTTTAAGTTACTGATTTGATATTCTT 70185 36 100.0 38 .................................... TAAAGGAAGTAGACCGTCTTGTTGAGCGGATATATCAG 70111 36 100.0 39 .................................... AATCAATCTGGGATAAGGTAAACACTTGATTAGTTTGAA 70036 36 88.9 0 ..............................C..TCG | C [70002] ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 98.1 37 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : AACAGTTCTTCTAAAATAAAAGCTAATAACTATAATAATCACTAGACTTAACAGGATTTGGCAGGTTTGTTAAATCTATATGTTGACTACTCTTTCAACTATTTGTTGACTTTACTAACTTCTAATTGCGATATCATATCTTGTATTTCATTATTTTATAATTTAAGTCACAAAACTCAATAATCCTTAAAAAATCTACACTTTTAAGCCAATATTGGCTAAATACTTCTTACAATGAACTAGCGTTGAGCGATTGATGTTGCTAATTGCCTCGTTAGTTCAATCTAGGGAACACCTCCCTATTAGATGCTATAGGTTTTTGCGAGGCTCAGGCAAAATGGCTGTAATGCCGATTCTGTTGTCGGGAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTCTGATTTAGGAGTAAAATGTTGTTTCAGCCGATGAAATTTCTGAGCCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : CACTAAAAAAAAAGCCCCAGTTTTTACTGGGGCTTTAGTGGTTATAGCAGTCGCCAGACCTATTAGGACAAAGAGTGATGCAGCAAAGCTAGACGGTGAAGTCTTTTCCTCGGGTGTTCCCTCCCCCCCTAGCCCCCCGTGCACGGGGGGTTGGGGGGGCTGTTCCCTGCTATAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAAGATGAAAAGCCGAGAGAGTCGGGAGGAGGAGAGGGCAGAAAGGGATAATGGTGCAAGGAATTAGTGACAAAAAGTGAATTCAGATTTTATTGACCTTTGCCTCCAGATTTGCTTTTAGAAAAATAAGTTTGAAACATTGCCTTAGCAATAGGAGCGGCGGATTTAGCTCCATAACCCCCATTTTCCACCACGACCGCGATCGCAATTTCAGGATTTTCGGCTGGGCCAAAAGCCACATATAGGGAGTGATCGGTTTGTCCCGATACCTCCGAGGTTCCGGTTTTCCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 82587-83417 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734708.1 Planktothrix mougeotii NIVA-CYA 405 scaffold00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 82587 36 100.0 35 .................................... AGCCGGGGGCCTCATTCCTAAGCGCGAATCATATT 82658 36 100.0 36 .................................... TCAGGTGTTCGTTGTTCTTGATTGGATAGGGGAATA 82730 36 100.0 36 .................................... AGGGTTTGAAGCCACTGGTTTTGCGTGGGCATTAAG 82802 36 100.0 36 .................................... ACAAAATCTCTAAATCTCACAGACGCATCCTATCGC 82874 36 100.0 31 .................................... GGCATATTAGACGCAGCTATGGACACGCGGA 82941 36 100.0 40 .................................... TGAATACTTCTTTGTTACAGATAATAAAGTGTTCCGCATT 83017 36 100.0 38 .................................... AGTGTATATAAGAGTCTGGACTAATAGGGAGATACATT 83091 36 100.0 30 .................................... TCCATGATTGAGATTCATAATTTAACTTGC 83157 36 100.0 36 .................................... TTCTTTAGGCGATAGCCAACACGCTTCTTTCTTCAT 83229 36 100.0 41 .................................... TAGAAATTGATACTACTTCCAGTGAGAGACTTCACCTCAAC 83306 36 94.4 40 GG.................................. TCTCCTTGTTCTGGTGATTACGCTTGTCGGTGTGCCTATC 83382 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 99.5 36 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TTGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTCTATATTGTTGCCTATGATATTCCCTGTGATAAACGTCGTCGCAAAGTGGCGAATTTATTGGAAGGATATGGGAAGCGGGTTCAATATTCGGTGTTTGAGTGTGTGTTGGCTCAATCAAAATATATTGAGTTACAGAAACGCTTGAAAAAACAGGTAAATCTAGCTGAGGATAATCTGCGGTTTTATCCGCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAAAGATTACTGAGTATCCGAGTTCAATAATTATTTAGGGTTGCTGGCGAGGCTTAGGCAAAATCGCTATAATACCGATTCTGGTGTTTATAGCTTCGCTATCCCTCTGGATAGGGGTTCTGACGTTTTGATTCAGGAGTAAAATCTTGTTTCAGCCAACTGTTTTTCTGAGCCCCGCAAACCCCCCCTAGACAACCGATGACAACTGGGTTTAAAATGGGAGGA # Right flank : CGCTAAGACAAAATTAGTCGAAGTTTTTTATTAATGTGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGGGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAAGCATTCCCCCAGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTACAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAAAACACCCTTTTAAAACTCAAACAAACTTACTTTCCCCACTCGCTAGGAAAATTAATTGAATCCGATCACACAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATAGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAACAGAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //