Array 1 426798-425915 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR594690.1 Variovorax sp. WDL1 plasmid 2 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 426797 29 100.0 32 ............................. CGCAGCGTCAGGCTTTGGCGTGCTGCGTGCGC 426736 29 100.0 32 ............................. TCTTGTGGGGCGCTGACGGCCGCTGCAACGTC 426675 29 100.0 32 ............................. TAAATCCGTTCGCACCAAGGTGAGCCGCACGC 426614 29 100.0 32 ............................. CCGTGCTGGGGCGCGCGTACCGCGCAGCTGCT 426553 29 100.0 32 ............................. CAGTCTTTGCTTCCATCTCGAGACGTCGAGTA 426492 29 100.0 32 ............................. CCGGCGTCCACCGCGTTCGACATCGTGCCCCT 426431 29 100.0 32 ............................. CGAGGCTTGTTGCATGCAAAGAAGGGGGCTTC 426370 29 100.0 32 ............................. TCGACCATCGAGAGCATCGCCATCCAGGAGCC 426309 29 100.0 32 ............................. CCGACGAGGAAGCCACCCAGACATCCGTAGAC 426248 29 100.0 32 ............................. CGGCTGGTGATTGGCCTCGAGGACGCCGAGGG 426187 29 100.0 32 ............................. TGCGCTATCACCTGGCAAGCGCGCTGCATTGA 426126 29 100.0 32 ............................. CCCTCTTCGAAGTGGTCGATGCCGGTGGACAC 426065 29 100.0 32 ............................. TGAAATTGGTCGTCCTCGATTTGCTCACGCGT 426004 29 100.0 32 ............................. GTACGGGCTGCGGGCGATGAGCATTTGCTGAG 425943 29 96.6 0 ...........C................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTCTCCCCCGCGCAAGCGGGGATAGCTCG # Left flank : GAGACTCAAGTAAGGCGGCACCTGCGTGACCACTTTAAGCAAACGCGATTTGTTGCGCGGGTCGTGGATGACCTCAAAGGCCTGTTCGAAGAGTCGACCGCATGATGCTCGTCCTCGTCCTGACTGGTGCGCCACCTCGCTTAAGAGGCCGGCTATCAACGATACTGCTTGAGGTGCGGGCTGGCGTCTATACCGGGCACGCGACACAGAAACTGCGTGAAGAACTATGGGCGTTGACTTGCGGCAACATCGAGGATGGCGACGCCCTGATTGTGTGGCCAGACCAAACTGAGGTTTGCGGCGTCTCGTTCCGGACGGTAGGCGTGAATCGGCGCCGGGCGGTCGAAGTCGATGGGCTGCAGCTGGTGGATTTCCCTCGGTTGAGCACAGACGAGGTCCCTGAGTCCATTATGGATTTAGCAGGTCTAGCGGAGGTGGTTTTCCCCGGTGGACAGTGTGACAACTAAAATGTTTCGCTAAATCAACGGGTTAGGGGAAGA # Right flank : CCCTTGATGGCCAAGTTCACGCCAATGAGCACGTCACCCCCGCTTGCGCGGGGATTGGAAGTCTCGGTCGACCGCCAACGGACAGCCCGTGCCAGGCTCTTGTGCTGCGGCGTGGAGCCTGGCCTCAGCTTTTAAGGCTGTAACCTATACTCGAGCGCATTGCGCTATCAGTGTCCTTTGTGATACAATGAGTGACGCTTTAGCATTCGTCGCCTACGTCATCAAGCAAGGCGGCATAATTTCACTATTTCGCTGTGCGCATGAACGTACTCTTAGACCCTTGGGTCCCCCTCCTGCTGCCAGACGGTACTGTGGCCAAGCAGCGCATGGTGGACATCCCTACCTCCGGTGCGCTTCGTGTGGAGCATGCCCGAGCCGACTACTCAGCGCTCATCACTGAGCTGGCGGTGTGCGTTTACCAGACCCTTGCGGCGCCGCACGACAGGATTGCGCGACGAGCTCTGGTGCGGGCCCCCGACCTTGCATTGCTGGACAAGGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCCCGCGCAAGCGGGGATAGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 428951-428101 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR594690.1 Variovorax sp. WDL1 plasmid 2 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ========================================== ================== 428950 22 95.5 38 A..................... GCCGTAGTTTCGGGTGTCGAACGACGCGTGCGTCTCTC 428890 22 100.0 39 ...................... AGGAGCATCGGACCGATGCCAACCGTCGCCATCGTTTAT 428829 21 86.4 36 .....A...........-..G. ACCGGATACGGAGGCCGCAAGCCGGCTCCCCCCCCA TA [428815] 428770 22 95.5 42 ..A................... GGCCGGTCTCGTTCACTGATATCGCACCGAACGGCTCCCCCC 428706 22 95.5 39 .......T.............. GGTCTGCGATGCCGTCCTCTTTCGGGGTGACCGGTCTCC 428645 21 90.9 39 .....-.T.............. GGGTTGTCGCATCATCACTTGCGGTGGCGTTGAGACTTC C [428637] 428584 22 95.5 37 ........C............. AGGCTGGAACCGCGAGCGCGAGCAGTATCAGGCGTCT 428525 22 95.5 39 ..................T... GGACTTGAGGGCTGCCATTTGCTTGTCTCCTGCGTCCCC T [428522] 428463 22 90.9 39 T.............C....... GTTCTGTAGGACGTCGTGCACGCCGCCGCCCTCGTCTCC 428402 22 95.5 39 ..................T... GGGAAGCAGCAAGTAGTCGCTCTCATTTGCGTCGTCGGC 428341 22 95.5 40 .......G.............. GCCCCCCCACCAGAACGTCCGGCCGCGCATCAGAGTCTCT 428279 22 86.4 37 .......G.......G...T.. GTGCGATTGCTCGTGCAGTGGCGAGAACCATGGGTCT 428220 22 90.9 37 ...C............C..... GCTCGCCCACAGGAAATGTTCTGGATGGGGCATGTCC 428161 21 86.4 16 ...C............C.-... GAAACGATTGCCGTCG GG [428157] Deletion [428125] 428122 22 68.2 0 TG.T..........A..C..CG | ========== ====== ====== ====== ====================== ========================================== ================== 15 22 91.2 37 CCCGCGCAAGCGGGGATAGCTC # Left flank : ACGAAGAGGCCGAGGCGCCAGCATTTCTGGCGTTTGCGGAAGAGCGGTCAGAAGGGAAGATTGAAGCAGCCAAGCGAGCGGCTAAAAACGTTCGACTGAATCTGACCGTGGGCTACTCCCAGTTGATTGCAGACGTGGCGCCTGAGCAAGCAGTGACCCGGCTGGGGGAGAAGTCGGTCCGGGTAGTGCTTTGCGACCAAGGCGGCGCCCCCTTGTTTGGCAGCATGGAGTTGTCCCGCCTAAGCCTACGAGCAAGCCTACTTGCTCTCGAGGTCGACGACACCGGGCACGCAAAGTTGAGGATGGGCGCAGCCGGCTCGGGTGAGTGGGAGATGTTGGCGGTCGACCATGCGAGCAAGGAGCGATTGGTCCGCTACAGTCGGACCCGTGGGTTTTCGGTGGGCCCACCACAGCGGCGGAGATGAGAGCCGCGGCGCACGTACGTGCGCCAATGAACGGATAAAGCCGGTGGCTAAAAAATGCAGGTGCGAAAGACGTTG # Right flank : GGTCACGTCAAGGCGCCCTCATTCGGCGGGATATTTGCTCTCCGCGTCAGCAGAAGACCTGGTGGTAACGCAGCGCTACACCTGGGTATGAACGCCCCGCTAAAGCCTATCTATCGCCTTCAGAAGGAACGGATACCCTTCATTTTCCTGAGCTACGGCCGCCTTGACGTCAAGGACGGCGCATTTGTACTGGAGGATGCGAATGGAACTCGCGTGCAGATGCCAGTGGCTGCTTTCAATGTCTTGTTTCTTGAGCCCGGGACGAGCGTGACCCACGCTGCCTTCCAGCTCGCGGCCCAGTGTCACACTCTCATTTGCTTCGTTGGCGAGCAAGCGTGCCGTACATACTCTGTCGGGCGCCCTTCCGACGGAAACCCTACCAACCTTAAAGTGCAGGTCTTGGCATATGCCGACGAAGCCCGGAGGCTTCAGGTGGCCCGCAAGATGTTCGAGATTAGGTTCGGCGAGGCGATTCCGGCCCGACGCAGTATTGAGCAACT # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:-0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCGCAAGCGGGGATAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //