Array 1 74185-71509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNCF010000007.1 Lacticaseibacillus paracasei strain 1001295B_180824_D1 NODE_7_length_119669_cov_24.942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 74184 36 100.0 30 .................................... TACAACGAAGCCATTCGGAAATTAGCAGCG 74118 36 100.0 30 .................................... TTGCTCATATTGGAATCAATGTCTTTCGCG 74052 36 100.0 30 .................................... CAGTAGCAACATAAACCCTAGTACCAATAA 73986 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 73920 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 73854 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 73788 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 73722 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 73656 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 73590 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 73524 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 73458 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 73392 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 73326 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 73260 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 73194 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 73128 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 73062 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 72996 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 72930 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 72864 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 72798 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 72732 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 72666 36 100.0 30 .................................... CTAACCACTGGACTGGCTGGAGGGGTCGCC 72600 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 72534 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 72468 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 72402 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 72336 36 100.0 30 .................................... AAGGTGAGCAAATCTTTGATGTTAGTCAGC 72270 36 100.0 30 .................................... ATCTCACTGATGTTATCGGCGATTTACGAG 72204 36 100.0 30 .................................... GGGATTGTGGGCTGACGATAGATATACGCT 72138 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 72072 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 72006 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 71940 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 71874 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 71808 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 71742 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 71676 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 71610 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 71544 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //