Array 1 135044-134216 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABVMM010000009.1 Mesonia oceanica strain ISS653, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 135043 36 100.0 30 .................................... AAGTCGCTTGTTTGTGAAGAAAGATCGATG 134977 36 100.0 30 .................................... ATCGTATTCAATAGGGATACCAAATTTTTT 134911 36 100.0 30 .................................... ATACCGAAAAGCCTTGTGAGGAGTGTATTG 134845 36 100.0 30 .................................... TAGAATTCTTTTGTTATACAATCGTCACAA 134779 36 100.0 30 .................................... ATAGTAACAGGGGTTAAAACATCTGGTAAT 134713 36 97.2 30 ...................T................ GAGCGATCTCATCATAACCATATCCCGCAA 134647 36 97.2 30 ...................T................ CTATTTGTCTCCAATTGTCTTGAACGCCAT 134581 36 100.0 30 .................................... CCGTCTTTTAATCTTTTGTCTAGCGATCTG 134515 36 100.0 30 .................................... AAGGCGGCATTCATCGCCCATACATTGTTG 134449 36 100.0 30 .................................... TAATTTTATAATACAATTGTTTGATTGAAT 134383 36 100.0 30 .................................... ACTTTCGTCTTTGTTATGTTTCCCTACCAT 134317 36 100.0 30 .................................... AGGCAACTCCTTTTCAATGGTTTTGCAACC 134251 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTGTAACAGCCTTTAGTTGGAAAGGTATTCACAAC # Left flank : TATGAGGTAATACGAAGAGATTATTTACTAAAAAGTATTCAGGAATTTGAAAAATATATGATCAAGAAATTACCCACATTAATTGATACTAATGAACATCCTAATTTTAATAAATATTTGACCACATTCCTTAAAAGCTTAGAATTAGTTTCTGAAGAAGACGCAAAATGGCTAATTTCCAAAAAAGATTTTGATACTACTCCTATAGATGAGTTGAAAAAACAATCAAAAATTATGGAAAAAGCTTTTTTATTAGTAATGATACGTAATAAGTTTTCACATAATCAATTACCAAGAAAAATTTATTACGATGAAATTTATAAAAATGTGCCTAATGCAGTGTCTATTAATTTTAATGAATTATTCCTAGAATATACAAATCAAACCATACTAGAATTTAAATAAGCATTATGATTTTAGCTTTGTAAAGCTCTTTGACATCATTTTATCTGAAGGTTTTTCAATAAACACATTAATTAACAATACCTTATATAAAATAG # Right flank : TTAAAGATATATTACCCTAACATTTAACACAATAAACAAGAAACAGGTAGATTACTTACCTGTTTCATCTCGTTAAGAATCAAAAAAAAGAATCTTTAGATTCTATAAAATATTAGTTAAAACTTCCGTATACAATATAAAATTTGCTTACTAGAATTTCTCCGAACTATTCAACATAAATTATTTTGATTTACAACTCATTTTCTTTCAAGAGAATTTCATACCTATTTTCTAATAATTTTATATAAGACTTCTGCATTTCTTCACTTAAAAACGAATTATGAATTAAGTCAATAGCTTTATTTTTAGACTTTTGAAATCTTTTAAAAACCCCGTTTATTTGTTTTGGGGTTAATTCTAAACCAAGACCAAAATCGACTAATAATTTTCTAGTTATTTTTTTCTTTTTCCCGGCAAGTGTTAAAGCCAGTTCTTCCTGATCGTCCGGATTTACAATAGAAATATTTAGCAGATCATAAGCTGGAGAAAGCGTCCATCCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACAGCCTTTAGTTGGAAAGGTATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 416736-409248 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABVMM010000001.1 Mesonia oceanica strain ISS653, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 416735 37 100.0 36 ..................................... TGAAACTAACGGGCTTGATTACATAGATATATATGA 416662 37 100.0 36 ..................................... ACGCTTGTCGCAGAAGCTGAAACTATTTCTAATTTT 416589 37 100.0 35 ..................................... CTTCACCGCAATTTTCAAGATAAGGAGCATCAATA 416517 37 100.0 36 ..................................... ATGGCTCTTTTTGCATGACCTTCTACTGCTTTCCAA 416444 37 100.0 35 ..................................... ATTAATTTTACACAGGATTAATTAATCAATTATTA 416372 37 100.0 37 ..................................... AAGCGGTCAGTACCAACTTCCTCACGAAGCCAGCCTG 416298 37 100.0 36 ..................................... TAAGGATAAACCTGCTGTAGAGGTTGATTCTAAATG 416225 37 100.0 37 ..................................... GAGCTTCTTAGGGATAATAAAATGAAAGCTCACGAAA 416151 37 100.0 36 ..................................... ACAGGGAATGTCAGGATTTGATAAGCAAGCAGGAAT 416078 37 100.0 36 ..................................... GTTATTGATATTGAGTATTTAGAAGAAAGTATGTTG 416005 37 100.0 37 ..................................... ACGAGGACATAGCAGAAAACGTAAGAAACGTAACCTT 415931 37 100.0 36 ..................................... AACCAATACTAAGACCGTTAAGCGACCTTACAAAAG 415858 37 100.0 36 ..................................... AAAGGTGTGTGGCTTGTAGAGGCATCTGCAGCTAAC 415785 37 100.0 36 ..................................... ATATCAACGATTCCGTAATAAGCCATAAATATTTTA 415712 37 100.0 37 ..................................... ACCATTGTTGCACTGTCATATAACAAAAATGGAAAGT 415638 37 100.0 36 ..................................... AGGTTATTGGGGGCATTTTTGGTGCCGGTTCGCCTG 415565 37 100.0 36 ..................................... TTGCAATCATCATCGCAATTAGTTTTTTAAACGAAT 415492 37 100.0 36 ..................................... CAGAAAATAGTAGAAAGCCAAGATCAATTAACGGCT 415419 37 100.0 37 ..................................... GCAGGTTCTATAACTCTTAATAACGTTACTATAGAAA 415345 37 100.0 35 ..................................... GAGACCCCCATTTTCTTTCTGAAATTCAACTTTTA 415273 37 100.0 37 ..................................... ATATCTTCATAAGAATAATTTAAAAACAGCCCTTAAA 415199 37 100.0 35 ..................................... ATCAAACAAATCAATAAATAAATATTTAAATTATG 415127 37 100.0 36 ..................................... CCTCTAAGACCGGTGCAAATTGAAACCGCTTTTTAG 415054 37 100.0 37 ..................................... CGTATTTGTGTAGCAGTTTCCCTTGCTCCTAAACCAT 414980 37 100.0 35 ..................................... TAATTAGTAAATAAGACTCGATTAATAATTGCCCA 414908 37 100.0 37 ..................................... TAATGAAAGCACGTTCTATATTTTGCTCCTCCTTTGG 414834 37 100.0 36 ..................................... ATATTTCGATTAATCCGCTAACAATAAAAGGAATTG 414761 37 100.0 37 ..................................... TTGTTGTAAATATTGCAGATGAATTCAAAAGCTGTTT 414687 37 100.0 36 ..................................... TTAGAACCACCTTCACCTCCTAGCTTTGAACCAGGT 414614 37 100.0 35 ..................................... TAAAGATTGGGATATGATTAAATTTCCCCAGAAAG 414542 37 100.0 37 ..................................... AGGTTGGTTATGTAGATAATAAAATTGAAGGGAATAA 414468 37 100.0 35 ..................................... ACCTTCCCGCTATTTCTTCAACACTAGCCTGTTTT 414396 37 100.0 36 ..................................... TTTGATTTTCAGTAACAAATAGGGGAGATTCAAAAA 414323 37 100.0 37 ..................................... AATATTACTCCTAAATTAGGAGTTCCTTCAAAACGCT 414249 37 100.0 36 ..................................... GAGTACAAATACGATTTAAAAGGTAAACCGGGGATT 414176 37 100.0 36 ..................................... ATATCGATGCCAACAGATAGATAATCCGAACAAAAA 414103 37 100.0 36 ..................................... TTGAAAATGAAGTTCACCCCGTAATAAGCGATAATG 414030 37 100.0 36 ..................................... ACGAATCTATTAAGGCGGTATGTAAAGGAATATGAT 413957 37 100.0 36 ..................................... ATAAACTCCCCTACTTCTTTCGCTACGTCCTGTACG 413884 37 100.0 36 ..................................... ATGAGCTCGTAAACGTAAGGCTGCGATTGCTTGAGT 413811 37 100.0 36 ..................................... GCGTAATATAAAATATCGACCACTCCCGGGTTGGGG 413738 37 100.0 34 ..................................... ATACAAACCATTCGGGTTGTATTTACTATAGAAG 413667 37 97.3 36 ........................C............ AGAATATCGATACTTTTACTTTCTTTCGCCACGGCT 413594 37 97.3 36 ........................C............ AAAAAATAAACACTATGAAAGATTTTAACCAGTTTA 413521 37 97.3 36 ........................C............ CTGGGATATCATTATCTTCGGAGATATCAACCAAAT 413448 37 91.9 35 ........A........C......C............ CTGAATCCCGTGAGACTAATCAAAAAGATTAGAAT 413376 37 91.9 37 ........A........C......C............ GAGTTGATACACCGGCGTTATTAAAAGAAATAACAGA 413302 37 91.9 39 ........A........C......C............ AACCTTAAATTATTATTAATTATGAAGTATTGTTCTTGT 413226 37 91.9 36 ........A........C......C............ TAACACCTTAAGGAAGTTAGCAGGAACAAGGGTTTG 413153 37 91.9 36 ........A........C......C............ AGTGGCTCTGGCAGTTCAGATAGTACCGGACAGATA 413080 37 91.9 36 ........A........C......C............ CAGGAAGTTGGTAGAATGGTTGGGGACAGTGTTGCT 413007 37 91.9 37 ........A........C......C............ TTAGAACCACCTTCACCCCCTAGCTTTGAACCAGGTA 412933 37 91.9 36 ........A........C......C............ GAAAAGACATCAACCGCTTAAAAACTCCTGCAGAAA 412860 37 91.9 36 ........A........C......C............ AGCCGTTGTAACCTCCGTTAATTGCTCGTGTAACTT 412787 37 91.9 35 ........A........C......C............ CTGAATCCCGTGAGACTAATCAAAAAGATTAGAAT 412715 37 91.9 35 ........A........C......C............ GAAAAATTATCGAATGAAGGTGTTTCAAAATTAAA 412643 37 94.6 35 .................C......C............ ACGCTGAAATTTTAGCCTTGACCGACAACGGAGCG 412571 37 94.6 37 .................C......C............ TGTGAATATTTTGGAATCTGCACCGAATACAGGGAAA 412497 37 94.6 34 .................C......C............ GTATCAACTAAATCTGATGACGCGTTAGCGACAT 412426 37 94.6 36 .................C......C............ TCACCTAATAAGTCAACCCTTTTAAAAGGTTGTTGT 412353 37 94.6 36 .................C......C............ AACCTAGGTGTGTTTGAGGTATAATCATCCTCATCC 412280 37 94.6 35 .................C......C............ ATACTGCGGATTATCGACCATAAAGGGTGACTCAC 412208 37 94.6 38 .................C......C............ AATGCTTCTTCAAGTACTTTAAGCCCTCAAATAACCAA 412133 37 97.3 36 ........................C............ AACCTGCAACGTCAATATAAATACCATTAGGTCTTG 412060 37 94.6 37 .................C......C............ ACCATCGTTTTTTTACATCTACCGGTAACGCAGGACC 411986 37 94.6 36 .................C......C............ CAACAAAATTATAGGTGGTCAATCAGCAAATTTGTT 411913 37 94.6 36 .................C......C............ CGTGCTGACTGTTTTTCACACCGCCAACAGATCTAT 411840 37 94.6 37 .................C......C............ GCTCTCTCGATGATGGAGCTTAATGTTTTTGAATTTT 411766 37 100.0 38 ..................................... AATATACAGACATTGGTAACAAGGCTAACGAATTAGCT 411691 37 100.0 36 ..................................... CCTCGTTATTTACCGTCCTTCGGTCACCCGAGCAAA 411618 37 97.3 36 ........................C............ AGTTCTTTGTACCTCATTACGCTGCTTCTTTTAATA 411545 37 97.3 36 ........................C............ CACTGGAGACGATATATTCTCAAAATGGGCAAACCA 411472 37 94.6 37 .................C......C............ CCTTATGCATCACTGGGGCAATCATTGGTGCAAATCG 411398 37 100.0 37 ..................................... ATGACAGTTCCTTTAAAAATATGGAACACCATTAAAA 411324 35 91.9 37 ........................C.....--..... CATCAATCAAAAGAAAACCGCCAAGGAAACCGCCAAA 411252 37 94.6 35 ........A...............C............ ACCGTCGCGTAAGATAGGTTCATTGCTTTGGCTTG 411180 37 94.6 35 .................C......C............ CCGTGATATTGGTTATAGCCTCTTTGGTTATTGGG 411108 37 97.3 35 ........A............................ GAAGTGGTTGGCACGTGGGAGATCACGTGGGAAGA 411036 37 97.3 37 ........................C............ ATGAACCCCTTGATTATATTTAGTCAGGCTTGGCACG 410962 37 91.9 35 ........A........C......C............ CAATTCTTAAAAATTGTAGCTATTTGAAAAGGGTT 410890 37 94.6 35 ........A...............C............ CGACATTGTATAACTGTTTTTACAGCTCACAACCT 410818 37 94.6 36 ........A...............C............ GAAATTTTCCCTTCTGTTCTCATAGTGTACATTATC 410745 37 97.3 37 ........A............................ CATCTTTCACGCTTACCGTATATGGGAGAAGGGGAAC 410671 37 100.0 36 ..................................... ATAATGTAAAACTCCGGAAGGATTAAACTATCAGCT 410598 37 100.0 37 ..................................... AAGTACGTTACAATGCGTCCAGAGCTTATTTCTGCGA 410524 37 94.6 35 .................C......C............ AAAAAGTCTCAAAAAGAATTAGATAGAACTACAGA 410452 37 97.3 37 ........................C............ ATGAACCCCTTGATTATATTTAGTCAGGCTTGGCACG 410378 37 91.9 36 ........A........C......C............ TTCCTTCAAGATTATTAATATGAAAAACAGCCCAAT 410305 37 91.9 37 ........A........C......C............ AAAACAAGAAGTGAAGTAACTCACCTGGGCATTTTAA 410231 37 94.6 36 .................C......C............ GAATTCATAGAAAGCTTTTTGAGTTCATCAACATCG 410158 37 94.6 36 ........A...............C............ ACGATTTGCGCATCGGCGGTTCTGATGAAGTCCCCC 410085 37 94.6 35 ........................C......C..... TGGCAAGTAAAATGTTTTTTGATCAAGAAAACTCT 410013 37 94.6 36 .................C......C............ GTGGCAAATGTGAAACTACCTAAATCAGGATGATTC 409940 37 100.0 37 ..................................... TCGATATCATCAACGTTCCCGTACCATTTGCGCTTAA 409866 37 97.3 36 ........................C............ CCGTTTCTGCGGTAGATGTTGAAGGTAACGAATCTG 409793 37 97.3 35 .....................T............... ATTGATGTGAAAGATCGCTACTATCCGGCCGAATA 409721 37 94.6 37 .................C......C............ TACGAAAAGACTTGGCAAAACGGATATGTACACGTAG 409647 37 97.3 35 ........A............................ CGATCATGCCGTAATGGATGAAAACAATGAAGAGG 409575 37 94.6 36 A.......................C............ TTGTAAGGAAAAGCACAACTACCAAAAAGAAGAGCG 409502 37 91.9 36 ......T..........C......C............ GACAAGGCAAACTCGAGCTTCTTCTCGTAAACCTCT 409429 37 94.6 36 .................C......C............ ATCCAGTAACTTCCGTTACGATCGGGATATAGATCG 409356 37 94.6 35 .................C......C............ CTGTAGTGATCGCAACAGGATTCGAACCTATGACC 409284 37 89.2 0 ...........C.....C......C.....C...... | ========== ====== ====== ====== ===================================== ======================================= ================== 103 37 97.0 36 CTTCCAGAGCATTCCATTAAACAATTAGGATTGAAAC # Left flank : TGCTCCCTTGGATTATAAATTTGCATATTGGAAAGATAGGGTTTACGACACCTACAAGCAGCAACTCTACTGTTATGCGGTATTAATAGAAGAGAATTTTCACGCTAAAGTTAATAAAGGCTTTTTGGTTTATACCCGAAGCAAACATAAATTGATAGAAGTCTCCATCCCTCCCGAAGCAAAAAAAGAAATAAAAGCGAGTATGGAAAAAATGCTGGTGATTATCCAACAAAATAAATTCCCGAAAGCCACAACATTTAAGAAAAGATGTGTAAATTGTACCTACCGGAATATCTGCATTAAATAGGTATTCCGCCTGTCAATTTATTTCTAATCACTTAAATTTATACGCTTATGCCAGTAAATACGGGGCTTTTTGAATACGGAAAATTTACTTATTTTTCCGTTTTTACGTTCTTTGACATATTGAAAAATAAGGTTTTAGAAATTGCAAATAATCGTTTAGACAGCATTATTTCTGAATTAGGCGTAACAATCGG # Right flank : TAAATTAGGGTCTCGATACAATTTTGATTAGTTACACTTCACAAAATCACTCGACCTGACTAATTTTAATTAGTTTTCAATAATTCCAATTCCAACTTTCCATTTAAAAAATACTATTTTTGGCGCAAAAGGATCTTTATGGTTATTATTTCCTATAATGTTAACGGTATTCGGGCCGCCCTCCGAAAAGATTTTCTAACGTGGCTTTCCCACGCCAATCCCGATGTGATCTGCTTGCAAGAGATTAAAGCCACTCCCGATCAGTTTGACGAAACGGTTTTTCACGAATTGGGCTATCCCTATTGCTATTGGTACCCGGCACAGAAAAAAGGCTATAGTGGCGTGGCTATTCTTAGTAAAAGGGAACCCAAGAACATTAGTTACGGTACCGGCATCGGTTATATGGATGCAGAAGGCCGGAATATTCGAGTGGATTTTGAAGAGGTTTCGGTGATGAGCTTATATTTACCTTCCGGCACCAACATCAACCGATTGGAATT # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGAGCATTCCATTAAACAATTAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [39-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //