Array 1 15-402 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPYI01000036.1 Yersinia kristensenii strain FCF326, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 ............................ ACTTTGGTGGCAGTGCGCCACGTAATCACCAC 75 28 100.0 32 ............................ AGTTAATCATTTGAGTGATAAGTCAGTATATT 135 28 100.0 32 ............................ ATCATCGATAACATGGAGAAAATAGTTTCAGG 195 28 100.0 32 ............................ ACCAGCTAATTCAGCGGTCCAATTTAATGAAC 255 28 100.0 32 ............................ TGAGCCTCATCAAGTTTCTGCATTGGTGAGGA 315 28 100.0 32 ............................ ACGCGGGGCGGCAATGGCATCGTTCTCGCCTT 375 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATATAAAAACATGGG # Right flank : AT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19570-18942 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPYI01000003.1 Yersinia kristensenii strain FCF326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19569 28 100.0 32 ............................ GAAAGAAAAAAGACGGCACCAATGAACAAAGA 19509 28 100.0 32 ............................ ATGTGAAACCCTTCATCGTGCGCACTTGGAAA 19449 28 100.0 32 ............................ TTATGTATATGCCGCAAATCTGAGCGATGAAT 19389 28 100.0 32 ............................ ACTTATCACGGCGAAGCATTGATGCGAATGAG 19329 28 100.0 32 ............................ AATCGCGGAGTCTGTAGCTGTAATATTATCTT 19269 28 100.0 32 ............................ GCTCTACCAACTGAGCTAAAAACTGTAATAAT 19209 28 100.0 32 ............................ CGAATCCTGACTAAAAGGATACGCAAAAGATA 19149 28 100.0 32 ............................ TAGTTTGGACCAAAAAGGATACGCAAAAGATA 19089 28 100.0 32 ............................ TAATCCCCCAAGGGGAAGAAATCGAAGAGATT 19029 28 100.0 32 ............................ CTCTAGACCAGGTACCACTTCAGCGCCCATGC 18969 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGGGCAGCACGGAACAATCTCTACCCTCGTTCACTGCCGCACAGGCAGCTTAGAAAAAGCGCATACAGCATCATTTGAAAATTGTCTTGTTCACTGCCGCACAGGCAGCTTAGAAAACAACGACGCAAACCCTGCAACTTTGGGACTGGTTCACTGCCGCACAGGCAGCTTAGAAAAAAGCAGATTCCACATTGCGGGAAAATAACGCGTTCACTGCCGCACAGGCAGCTTAGAAAGTGAGACGCTGGATATGTTGAACAAATTCCAAGTTCACTGCCGCACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA # Right flank : TCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATATTTGATTTTATGTAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATATGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 20160-19772 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPYI01000003.1 Yersinia kristensenii strain FCF326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20159 28 100.0 32 ............................ GCCCCCCTAAAACGTTTAAAAAAGATCAAATT 20099 28 100.0 32 ............................ CTGATGGGCAGCACGGAACAATCTCTACCCTC 20039 28 100.0 32 ............................ AAGCGCATACAGCATCATTTGAAAATTGTCTT 19979 28 100.0 32 ............................ ACAACGACGCAAACCCTGCAACTTTGGGACTG 19919 28 100.0 32 ............................ AAAGCAGATTCCACATTGCGGGAAAATAACGC 19859 28 100.0 32 ............................ GTGAGACGCTGGATATGTTGAACAAATTCCAA 19799 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATTATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTCACTGCCGCACAGGCAGCTTAGAAAGAAAGAAAAAAGACGGCACCAATGAACAAAGAGTTCACTGCCGCACAGGCAGCTTAGAAAATGTGAAACCCTTCATCGTGCGCACTTGGAAAGTTCACTGCCGCACAGGCAGCTTAGAAATTATGTATATGCCGCAAATCTGAGCGATGAATGTTCACTGCCGCACAGGCAGCTTAGAAAACTTATCACGGCGAAGCATTGATGCGAATGAGGTTCACTGCCGCACAGGCAGCTTAGAAAAATCGCGGAGTCTGTAGCTGTAATATTATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 30702-29053 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPYI01000003.1 Yersinia kristensenii strain FCF326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30701 28 100.0 32 ............................ GCGGGGTCTGTAGCGTTAATAGCGCCATATGA 30641 28 100.0 32 ............................ AGGTAGAACAAAGTGAAAACCTAACACATGTT 30581 28 100.0 32 ............................ ATCCAATACCAATCGATATCCCCCTCTTCGTT 30521 28 100.0 32 ............................ AATACGAATAATGGCGTTAAATTGCCCTAACA 30461 28 100.0 32 ............................ GTCTTTAAATAACCCACGGCCAAGCTCACACG 30401 28 100.0 32 ............................ AAATGCCAAATCAACATGCGCATCAGAATGTC 30341 28 100.0 32 ............................ GGATCGCATTCAATGGGACGCAACCAGTAACA 30281 28 100.0 32 ............................ GGATCGCATTCAATGGGACGCAACCAGTAACA 30221 28 100.0 32 ............................ TCAAAGAGCATGAAAAATCGCGCAATCACCCG 30161 28 100.0 32 ............................ TGCGCGCCCCGGTGGTTTGCCAGCAAGTATGC 30101 28 96.4 32 ..........................G. TTGGAGCGTAGTTTCCAAGCTCAATTGGCTGC 30041 28 100.0 32 ............................ GCTGCAAGGGATTGGTAAGCTAAAGCCGAAAC 29981 28 100.0 32 ............................ TGAGCCTCATCAAGTTTCTGCATTGGTGAGGA 29921 28 100.0 32 ............................ GACAAGAAAGATATGAGGAAGCTAAGCAGATG 29861 28 100.0 32 ............................ ATGACAATGACGGTTTAAATATAAAAACATGG 29801 28 100.0 32 ............................ ATTTGAAAAGGCCATTCCACGTACCCGAGTAT 29741 28 100.0 32 ............................ AATCGTTGTGAAACAGTACCCAGCCGAATGTG 29681 28 100.0 32 ............................ AGATACAACAACTATATTTGCAAGCGTGTCTG 29621 28 100.0 32 ............................ CATCAGTAATGAATCGAACCTCATCGACTGAT 29561 28 96.4 32 ..C......................... GTTAGCAAGTCTTCATTCAGCTCTACGCTCTG 29501 28 100.0 32 ............................ TGTTTGAGTTTTAAATTCAGCCAATGCGTTAT 29441 28 100.0 33 ............................ CTGCACCAGAGCTTATCTATGCCTGGTTCGAAC 29380 28 100.0 32 ............................ TGTTGAACTCCACCACGACGAACGTATTGAAC 29320 28 100.0 32 ............................ CTATTCAGGGCAGGTAAAATCCCCGTTATCAT 29260 28 100.0 32 ............................ TTCAGGATACATGATAGTGAACTTATGTTGCG 29200 28 100.0 32 ............................ GTTCAGAATCATTAACAGCGAGGTAGGTATGG 29140 28 100.0 32 ............................ AGTTAAGACGAACTGCAATAGCGACGAGGAAG 29080 28 78.6 0 .....................AGCATC. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATTCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATTATCCTCAGCAGAAAAGGCTTCATGACATTTTGCCTTAATCTCAACTTGAACCCTTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTTTTAAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTGGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //