Array 1 7987-7495 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCC01000248.1 Desulfosarcina cetonica JCM 12296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 7986 32 100.0 33 ................................ AAAAAATATCCGAATACCTGTCAAGGCGTGATC 7921 32 100.0 34 ................................ AGAAAATCTGTTCTTTGCGCTTGGTTGACCAATT 7855 32 100.0 33 ................................ TTATTTTATAAACAAGGCCTTGGTTAGTGGGCT 7790 32 100.0 34 ................................ ATCAACCGGCGCTTGCCCTTGCTGTTGTTTGCGA 7724 32 100.0 34 ................................ ATCAATGCGATCGCAAAGGGCGGTCATGATCCTG 7658 32 100.0 33 ................................ CATTTTACTCCCCTTTCCCTTTTTACTCACATT 7593 32 93.8 35 ....T....T...................... ACGGCAGTAGTCGCAAATCGGGCCGCCTTTCGGTC 7526 32 96.9 0 ....T........................... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.8 34 GTCGCCCCTCCTGCAGGGGCGTGGATTGAAAC # Left flank : CAGACGACGTAGG # Right flank : AGGTTCTGCCTGGGTAAACTGGGGTCACCCATAAAAGGGCGGGTCACCAGCTGGGTGTTCAATTGGCGGGGGGGTAGGTCAAAAACAAGGCCGTTTTTCGGCCTTAAACAGCTCCATAGGATCATTCTATTCATCTGTCAGCATCTGAATGAAAAAATCAATTTTTCGTGGCAGTAAAATTATATTATCCATAGATCCTATTGGCCCCAAACTACCTATTGACCCCACACGAATGGAGGACATGGAAAATGTTACATCGGCTTGGTTTTGCAATTTTATCATGCCTTTTCTTGGTGCTGTTAAGCGCTCCTGCAATGGCTGTTTCAGACAGTTACGAATACATTACCGCAGAAAAGGTGAAGACGAAACTGGAGAGCAACGCGCCCATGCATCTGGTGGACATTCAGGTAAAAGAAGATTTTGACCAACATCACCTGCCTGGCGCTATCGCGACGTATTCATATCCTGTGAAATCACAGGAGGATAAGGCCAAGTTAGAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCCTGCAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17982-19138 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCC01000123.1 Desulfosarcina cetonica JCM 12296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 17982 32 100.0 34 ................................ CCTTCAAACGTGGCAGCTTGTTGGTGATTCCTGG 18048 32 100.0 35 ................................ AAATCTTTTTTTGCATTTAATGTAATTTCACCGAG 18115 32 100.0 34 ................................ AATGAACCAGGCGTAATCCTCTATCCCATGACCA 18181 32 100.0 33 ................................ TTTCAAGTATAGGCGTGATCGCCAATTCCAACG 18246 32 100.0 34 ................................ CGTCTGGTTGCGCGACCATGATAGTATAGTCAAC 18312 32 100.0 36 ................................ ACCAACCTCTTCAGTAAGAATTGACATCCCGAAAAA 18380 32 100.0 34 ................................ TGCCATCCTATCGTTACCAGGACAGAAGACGGTG 18446 32 100.0 34 ................................ ATGGCGTTTTGGAAACGGTGGTATCGCCGATATA 18512 32 100.0 35 ................................ TAAATTCTCTGAACGCATAAGGGCTTTGCGACCGA 18579 32 100.0 35 ................................ GATGAAACAGTGCTGAGAAGAGCCCTTAACACCAT 18646 32 100.0 34 ................................ AACAATGATCCTTATCCTTCACACAATTTGTCCA 18712 32 100.0 34 ................................ ATTAACAAGTGTTTTAACAGCGTGGTAAGATTTT 18778 32 100.0 33 ................................ AATGAAACAGTGCTGAGAAGAGCCCTTAACACC 18843 32 100.0 34 ................................ TCAGAATCAGAAGAACCATCAACAGAACGGTCAC 18909 32 100.0 34 ................................ TGGAAAAAAAAAGAGTAATGGTGAACCCTATACC 18975 32 100.0 34 ................................ AATTTATTAGCTATACCAGTTAGTTGAGAAGATA 19041 32 100.0 34 ................................ CATGGCACCGTCAAGACCTTCGTCCTGGACGCAA 19107 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 100.0 34 GTCGCCCCTCCTGCAGGGGCGTGGATTGAAAC # Left flank : CCCATTTGTCTGGAGGTAGATGCCATGATGGTTCTGGTGAGTTACGATGTGTCGACGGTCGAAGACGAAGGGCCGGGGCGTTTGCGCCGGGTAGCCAAGATCTGCAAAAATTACGGCCAACGGGTCCAGTATTCGGTTTTCGAGTGCATCGTCGACCCGGCCCAATGGACCGTTCTCAAACAAAAACTGATCGATCAGATCGAAGCCGAAACCGACAGCCTCCGGTTTTATTTTCTTGGCGCCAATTGGCGAAACCGGGTGGAGCATGTGGGCCTGGAAAAAAGTTTTGATCAGGAAGGACCGCTGATCGTTTGAACGGTCTGCGAACCCCAAGTTCGCATGATTTTACAGGCGGGTTCGCAAGGTGAGATACCTTGTTGGTTTTCATACATATTATGGATTGAGCGCATTCATGGATGAGAACTTTATCGGTGAGAAATTCGGGCTTCGCATATAAATCCCATTCCCACCGTATAAAAACGGCAGGTTAGGAAGGAACG # Right flank : TTATTTTAAATGTTTGTATTTATGCGTTAAAGGGAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCCTGCAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2442-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCC01000386.1 Desulfosarcina cetonica JCM 12296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2441 31 96.9 34 -............................... CTAATCTCCATGCGTACCTTAACGACTGATCCGC 2376 32 100.0 32 ................................ ATTTTTTATAATAGCCTCAATAACGGCGACTT 2312 32 100.0 34 ................................ TTAATACCTGGGGAGACATGTATGAAAGCATCGG 2246 32 100.0 34 ................................ CCATGCACTTCCGCCAAATTTATAATAATTTCAG 2180 32 100.0 36 ................................ ATCAAAATAAACAATCCGCTTTGTTAAACGGCGGAA 2112 32 100.0 35 ................................ ACAAATGGCGATGACACGGTTGACGACCAATCCGC 2045 32 100.0 34 ................................ TTAATGCCCCAAAACGCAACCAAAGCCGTTACCA 1979 32 100.0 35 ................................ TTAATGCCCCAAAACGCAACCAAAGCCGTTACCAG 1912 32 100.0 32 ................................ TATGGAAGATGAAGAACCACCATTAAGCAAAC 1848 32 100.0 33 ................................ ATCTTCCATAGAATTCGATCAGTCTGGATTCGA 1783 32 100.0 33 ................................ TTTTGTATTTGTCAAGCCCTTGGATTTCTGCCG 1718 32 100.0 35 ................................ AAACATTTTAAAAAAAAAGAAAGGTTTGTCTGATG 1651 32 100.0 34 ................................ AATGTCGGTTGCCCAGCGGGCGGTTGTTGTTGCG 1585 32 100.0 34 ................................ CCGCATGATCAGCCAAATCCTGCATGGTCGCCGT 1519 32 100.0 34 ................................ CATCCGCGCCCATCCACATCGTCCAATGGCTCAT 1453 32 100.0 34 ................................ CGTCAGCACCAAGGATCCGTCCGCGGCCACCAGT 1387 32 100.0 33 ................................ ATCTCCGCGGCGTATGACATCAAGAGCGGGATT 1322 32 100.0 32 ................................ TCCGTCGCAGGGTGATGACCAAGTTGTAGGGC 1258 32 100.0 34 ................................ ATTGAACCAGAGGCCTTGTAATTGCCTCTCCCAT 1192 32 100.0 34 ................................ CGTACAACTGCGATATGGCCATATAGGACTCATC 1126 32 100.0 35 ................................ TGTTTCGTCTTGCATGCTTGTCCTCGCCTTAGGTG 1059 32 100.0 34 ................................ ACTGTCTGCCATCTCATCTCTACAGCAGGAAAAG 993 32 100.0 35 ................................ ACCATCAGATATAACATTGTATTTCATCTCACCGG 926 32 100.0 34 ................................ TTGCCCCGGGCTAGATAACATCCCGTCTGGTCTT 860 32 100.0 33 ................................ CCTACACGCTGGCCGTGTCCGTTTTAATGAGTT 795 32 100.0 35 ................................ ATATCAAGAAAGGAAGGAACTGATATAGCCCGTGA 728 32 100.0 35 ................................ CGTCGATTGATACGATAGGATCCGCGCAGCGGTAC 661 32 100.0 34 ................................ TTCGTCCGACATGTCACCACGGTCCTTACTACAC 595 32 100.0 34 ................................ TATGTTAATTGATGATTATTTTCAGTACGATAAA 529 32 100.0 34 ................................ ATCATCAGAACAACCTTGGTTTCTTTGTACAATC 463 32 100.0 33 ................................ AGATTTACGCACCTATACCTCAAAAAAAGATGT 398 32 100.0 35 ................................ ATTTTAAAGGCCGGCTGGGCCGGTCTTCCCCGCGA 331 32 100.0 35 ................................ TATCTTTCCACCAAGCCATCATGCCCGTGCGTATG 264 32 100.0 34 ................................ GCTCCATGGCTTTCCGGTGAAGGGGTCGATGAGC 198 32 100.0 34 ................................ AGCCTACTGCACGTGCCCTGCTGGACAAAAAGGA 132 32 100.0 34 ................................ TCGTTGATGGCGATCCGGTGGGGCGTAAAGAATG 66 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 37 32 99.9 34 GTCGCCCCTCCTGCAGGGGCGTGGATTGAAAC # Left flank : | # Right flank : CAAGAAGAGCTAAAAACAAAAAACATGATGACAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCCTGCAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //