Array 1 108027-106363 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDI01000002.1 Salmonella enterica subsp. enterica serovar 4,12:r:- strain SAL3267 NODE_2_length_178920_cov_4.82289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108026 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107965 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107904 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107843 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107776 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107715 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107654 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107593 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107532 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107471 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107410 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107349 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107288 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107227 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107166 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107105 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107044 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106983 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106922 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106819 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106758 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106697 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106636 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106575 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106514 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106453 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106392 29 96.6 0 A............................ | A [106365] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125411-124285 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDI01000002.1 Salmonella enterica subsp. enterica serovar 4,12:r:- strain SAL3267 NODE_2_length_178920_cov_4.82289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125410 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125349 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125288 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125227 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125166 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125105 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125044 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124983 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124922 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124861 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124800 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124739 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124678 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124617 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124556 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124495 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124434 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124373 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124312 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //