Array 1 227312-224290 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZWD01000002.1 Salinisphaera sp. Q1T1-3 NODE_2_length_368665_cov_18.955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 227311 28 100.0 32 ............................ CAGGGCAAGATGCCCGGGCCCGGCGGCATTTG 227251 28 100.0 32 ............................ TCGACCATGACGGCCGGGCCGCCGGCCAGTCG 227191 28 100.0 32 ............................ GAGCGCGCCTGCGTTGATGCACTGCGTCACCC 227131 28 100.0 32 ............................ ATTAGCACGACTACGCTGGTGTAGTACCCCGC 227071 28 100.0 32 ............................ TCGTCGAACGGTGGGCATTTCATCTGACGAAT 227011 28 100.0 32 ............................ TCGAATACGGGCCATCAGCTCCGATCGCCGGG 226951 28 100.0 32 ............................ TGCCAACGCCTCCGGCTGAAGGTCGCCATACA 226891 28 100.0 32 ............................ TCTCTGGCCGACCTAGCCCAGATGGACGTCAC 226831 28 100.0 32 ............................ GGCAATCAGGTTTGGCACGACGGCAACACAGG 226771 28 100.0 32 ............................ GAGATATTCACGCGTGGCCGGCATCGTGTCAC 226711 28 100.0 32 ............................ TGAAAGCGCTCCGCGAAATCGTCACGAGCGAC 226651 28 100.0 32 ............................ GTTATCATCAGTCGTGGCGCCGCCGCCCGACC 226591 28 100.0 32 ............................ AGACCCGGCCCAGCCGAGAGCTGTTCAACAAG 226531 28 100.0 32 ............................ CGACCCATTCGGACGTGCTGCGGTATTACGCC 226471 28 100.0 32 ............................ TGCGTGTTGCCGAGCCGCATCACGACGCGACG 226411 28 100.0 33 ............................ CGCGAGGCAGACGGCGGCCAGATCATGCTTGAT 226350 28 100.0 32 ............................ ACTCTTTTTTTGTTTGCATGTCCGTACCCCGT 226290 28 100.0 32 ............................ CGATCGCGAATGCACCGCGTGATATTCCGGCG 226230 28 100.0 32 ............................ TATTCGGGGGCGTTGGCGTATATCTCGCGAAC 226170 28 100.0 32 ............................ AAGACTCTAGCCTTTCGTTACCTCTCCAATAG 226110 28 100.0 32 ............................ TGAAGCCATTGAACGATCGTTATCCGATCATT 226050 28 100.0 32 ............................ ACGTGTTCGCACTCCACATCAGCAAGCCATTG 225990 28 100.0 32 ............................ CGCCGCGTCGAAACGTTAAATCGACGTTGGTC 225930 28 100.0 32 ............................ AAACGCGGTCAGGACATTGGCCGCTCTCTAGA 225870 28 100.0 32 ............................ TGCACAACGAGCGCAGCCCTTTTTCGATACAC 225810 28 100.0 32 ............................ TGAACCGTGGCCGCATCCTCGGCGTTTTTCGC 225750 28 100.0 32 ............................ TTGATACCCCACCAGCCCTTGGCCTGCAGCCG 225690 28 100.0 32 ............................ AATCCAACAAACCGCGCCGCTGCAACCGCGCA 225630 28 100.0 32 ............................ ATCGGGATGCCATGCGCTGCCGCCCTGGGCCG 225570 28 100.0 32 ............................ ACCGGCCGGATGCTTTGCGAGGCGTGCGGCGA 225510 28 100.0 32 ............................ TCGATCCAGTCGGTGATGCTGCGCTGGGTTTT 225450 28 100.0 32 ............................ GCGACGATCAGAAGACACTGCGCAAAGCCTTG 225390 28 100.0 32 ............................ AGGTCGTCGTCGCTGCCGGCGGGCGGGGCGCC 225330 28 100.0 32 ............................ AACAATCGAGACAGCGCCATCAACGAGCCGTT 225270 28 100.0 32 ............................ GAAGCGCGGCTGACTCCAACAAATATCGGCGA 225210 28 100.0 32 ............................ AGTCGCTAACGGGCGGCTGGGCATCGCGCGTG 225150 28 100.0 32 ............................ ATGCGGACCTCAACAACAGCAACCATTCGGAT 225090 28 100.0 32 ............................ TACATCACATTCGCCCCGCAGCAGCCGATGCC 225030 28 100.0 32 ............................ ACAGCCTGGGCAAGATAAAAACCAGCGGCAGT 224970 28 100.0 24 ............................ TACTCATTCGGTGGGCGGATGGGC Deletion [224919] 224918 28 100.0 32 ............................ TTGATAATTGGATGATCGTTCAGGGGCCGGAT 224858 28 100.0 32 ............................ GCGTCGGCCAGACGGCACGACAGCTCTCGCCC 224798 28 100.0 32 ............................ ACCACTCCGTTATTGTCACGTCGTATCCACGC 224738 28 100.0 32 ............................ TGATATCAGGCACGCCGAGCGCTCCCACGCGG 224678 28 100.0 32 ............................ TTGCCCATCGCCGCCGACGTATCGCCGAGCGT 224618 28 100.0 32 ............................ ATGGAACTGGCCTACCTGTGCCGCGCGCGCAT 224558 28 100.0 33 ............................ CTCGGAATTTGTCGACGAGAGGGCCGATGCCGG 224497 28 100.0 32 ............................ GTTGTCGTTAGCACTTATAAGAGTCACGTCGT 224437 28 96.4 32 .......A.................... TGACCTCGCGCAAACTCGGCGTGCAGACGCTC 224377 28 100.0 32 ............................ GAACTCGTCGACGCCCATGTGCTGGCGATAGA 224317 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.9 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : ACCGGCTCGGCCAACTCATGGCCACCGACTGGCTCAAGGGAATGCGCGATCACGTGGAAGTCGGTGATATGGCCTCGGTGCCGGCAGACGCCACCTATCGAACCGTGCGACGCCGCCAATTCAAGACCAACGCCGATCGCCTTCGCCGCCGTCGTATGCGACGCCACGGCGAATCCGAGGCCACAGCCGCCGAGCGTATTCCCGAAAGTGTCGAGCAACGCATTTCATTGCCCTTCGTGCAGGTCCGCAGCAGCAGCACCGGGCAACGCTTCAGCCTGTTCATCGAACACGGCCCGAAACAGTCGGCACCTCAGGATGGCGCTTTCAACCACTACGGGTTGAGCTCGGACGCGACTATCCCCTGGTTTTGACCCTTTTTGGCGACAAATCCAAGGCTATTTATAAATCAATCACTTACAGATCGCCTTATAAAAAGGGTTGTGAGGCACAACACAAACCCAGGTCTTTAAGAATCAGCTATATACGAGCTTTTAGCTCTA # Right flank : CACCGCCGTCAGGAACACCACGCTGCTCGATGCCTGATTGCAATGCTTATTTCGACTCGTCGTTCAGACTGAGGCCAACCGCAACGGTCAACGCCTGGGCCAGGCACATGGAGGCCGTCAGTGACCGGAAATTGTGTAGCTCCGCGTCGTGGACTTCCAGGCAGACGGTGGCGTGGGCGGCGACCGGGCTCAGGGGGCTGTCGGTGAGGGCAATGATGGGGGCGCCGTTTTCGTGGGCGCGGCGGATGATGTCGGCGGTTTCTTCGGCATAGGGGTGGAACGACACGGCGAACAATACATCGTCGGCCGCGATACGCGCCGCCTGCTGTTCGAGCATGCCGCCCAGGCCGTCGAGCAGGGTGACGTCGGCATCGATCTGCCCGAGGGCATAGCCCATGTAGGCGACGACCGGGAACGAGCGGCGCTGGCCGCACAGGTGGATGCGCCGCGCGCCGGCCATGATGTCGGCGGCCTGTTCCAGCGCCTGGGCGTCGATGTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 238521-236388 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZWD01000002.1 Salinisphaera sp. Q1T1-3 NODE_2_length_368665_cov_18.955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 238520 28 100.0 32 ............................ TCGACCATGACGGCCGGGCCGCCGGCCAGTCG 238460 28 100.0 32 ............................ AGGCCTTTGTAATCGGTTTGCAGGTCGCTGCG 238400 28 100.0 32 ............................ AATTCAACCGAGCGCTATCCGAAACCCGGATG 238340 28 100.0 32 ............................ AGATTCGCCAGACCGACGGGTTGACCGGCAGC 238280 28 100.0 32 ............................ CCGACGCGGCCAATCGCTGCATTGCTGTCGCC 238220 28 100.0 32 ............................ GGTTTCGCTCGGATTCAGGTCAATCGCAAGGC 238160 28 100.0 32 ............................ ATCGGGGCCTTTTATGACATAGCGGTTATTGG 238100 28 100.0 32 ............................ TTCGCCCCGCTGTAGACCATGCCGTCCTTGCC 238040 28 100.0 32 ............................ CGGAAAATCTCGGCGCTCACGACAGCGCCACG 237980 28 100.0 32 ............................ GAGGCGTCGACGCACAACGAATCCGATACGTT 237920 28 100.0 32 ............................ AGAATCCGTTGTATACGGCTGGCGCGCTGGCG 237860 28 100.0 32 ............................ ATTACGGACGAGGGCGGGATGAATCGACGCAA 237800 28 100.0 32 ............................ AGATGGCCTATCGACCGATCATGCCGAGGACG 237740 28 100.0 32 ............................ AATCGTTGAGACCTGCGATCGTTGCATACGCA 237680 28 100.0 32 ............................ CCGAACGTGTTACCCGTCGACCACGAATATAC 237620 28 100.0 32 ............................ AGATCGCCCAGACCGGCGCGCACCTGCTCGGC 237560 28 100.0 32 ............................ ATTGGCACGGAGACGATTTCTTCATCGAAGAC 237500 28 100.0 32 ............................ GCCCGACTCGCGAAGATCCGACATGATCGGGC 237440 28 100.0 33 ............................ AGCATCTACGATGGCGATACGTTCCGTGTCGAT 237379 28 100.0 33 ............................ TGATTGGTCGATCCAGTGTTCGACGCGCTTCAA 237318 28 100.0 32 ............................ AGGACAGCGAACACAACACGCGACCAAGTAAC 237258 28 100.0 32 ............................ GTATTTAACCGCGCCATTCTGATTTCAGGCGT 237198 28 100.0 32 ............................ AAACGATCCGCAAGCGCTGCGAGAGCGTCGTC 237138 28 100.0 32 ............................ GCTGCGAACACGACGCAGGGGCATGGGTAATG 237078 28 100.0 32 ............................ GGCAGAGACGCGCGAGTACGCAGACAGCATCA 237018 28 100.0 33 ............................ CCGTACATCGACAGCGGCAATGCGGCGTTGGAT 236957 28 100.0 33 ............................ CACGGCGCGACCCCGTTTCGGCTCAACCTGCAC 236896 28 100.0 32 ............................ ATGATGCGATTCGACCAAGCCGTTTCGTCCTG 236836 28 100.0 32 ............................ GGAAAAGCGCATTCAATTCGTAGGGGCATAAC 236776 28 100.0 33 ............................ CCTTGCTTCCTTTGAGGACTTAGGGGGTACTAC 236715 28 100.0 32 ............................ GGACAAACTCACGTCAGCGCCGAGCGCATGCT 236655 28 100.0 32 ............................ ATCTGTTCAAATACATAAGCGGCCATTGTTCG 236595 28 100.0 32 ............................ TGGTCAAATGCTTTCCCGGCTGTCGAGACGAC 236535 28 100.0 32 ............................ TCCTCGACAGTCATTTCGCCCTCCTTCTGAAA 236475 28 92.9 32 .......T.....C.............. TCCTGGGCATTTCGCACCATACTGGTATTAAT 236415 28 89.3 0 .....................CG.A... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CCAACGCCGCCGTCCAATTCATCGGCGCCGCCATCGTCACCATCCCCGCCGCCCTGGCGACCGAGGCCGGACGCTTCGAAGCCACATGGCAGGCCTGGCTCGGCCTGACCTGGTCCGTGCTCGGCCTGTCCGTCGGCGCCATCTCCCTGCTGCTCGTCATGATTCGACGCGGCTCCGTGGCCAGCGTCGCCGCCCTGTTCTATCTCGTCCCGCCCGTCGTCGCGGTACTGGCCTGGCTGCTCTTCGACGAAAACCTCCAGCCCATTCAAATCGGCGGCATGCTGATCGCCGTGGCCGGCGTCGCCCTCGCCGGGCGGCAGAGAGGCGGCTAAACATGCAAATGTACCGGCAACGCGACGCGTCCGGGATGACCCTTTTTTGCCCCCCGTATAATCAGCACAAGAAATCAATCACTTACAGAAGCGCTGTCAAAAAGGGGTGATTCGGACAAAATAGGCCTCGGCTCTTTAACAACAAAGCGCTACAGTGATTTCGCTCTA # Right flank : TGTTTCGAGATCGCTCCACTGGGACATTGCATGATTTGCTGCCATGTCAATCGCGCCCGCAGCAGATGAACGTCGTCAAGCGCAAGCCGGCGAGCCATCCGTGGACGTGGCATCGCAAGCAAGCCCCGGGCACTGACTTCTGGCGCTGAGCCTTGATGGTGTCGTGGTCTTGCGCGGCGACGCCCCGCGCAGCTGACGTTTTGATTGGATTTAGAACCATCTCTTGCGACGAAAATCCCCGCTCCGTTAATTTCATGACGGAGGGGGAAAGACATGGAAGATCTCGCGCCGAGCGATCTGAAGACGATCCTGCATTCCAAGCGGGCGAATCTTTATTACCTGCAGCATTGTCGTGTGCTGGTCAAAGGCGGGCGTGTGTCGTACGTGACCGACGAGGGGCGGGAATCCAAGTACTGGAATATCCCGATCGCCAATACGACCTCGATGCTGCTCGGCACCGGCACGTCCATCACGCAGGCCGCGGTACGCGAGCTGGCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //